Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCTTCCTCTTCTTCACCTCCATTGTTAAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACAGTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATATGCTTCGTTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAGAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAGAGACAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGTTTTGTATGCATTCTACCTGTTTGTGTTTTGTTTTCTGTGAAACTTCCAACTTGGAAATTTGATCGTAGCTATGAATATGTTTAGATTGTCCAATTGGGTTCTTTGTTTCGATTCACAAATGTGCTCATTTTAGTTCCTTATAATAGTTGCATGTCCCTTTCTTTTTTCTTGCAACTACTATAAGAATGAAAATGTGAGAGCACATAACACCAATCTTTCTCTGTGCTGGTGATTATTAGGTTGTTATATGGTAGAGGAAAATTTTAAGATGAAGTTGTTAGGAGAACTCAATAGAAAACAAGAAAACAAATCAGTGCGGAACCAATTACTTATGTTCTGTTTCTAACCATTTAGTTTTTCAAAAACAAGCTTATGAACACTACTTCCATGTGTTCTTAAGAAAGGACAAAAGACTTACCTAAAAATTGCAAGTAAATAGACATAATGTTCAAAAACTTAAAACCAAAAATAAAATGATTGTCAAACGGAATATTGTTGCTTTGCAACTCTTGCATGAAAAAGCTAATTCAGCAATACATAAATGGACATGGAAAAATAGAGGGGCGGGGATATAAGAAGAATTGTGGAGAGAAACAATAAGGATAACTAATTTTTTCTAATGAGCAAAATCTACCATACAAACACAGACTCATACAAATATATTGATGGGGGTCATTCATGGAGATGGTAGATCTTTTCCCTGTTGATAAATGGAAAGATACATCAAATTATTAGGAGAACTGAAAGTAATTTATTCATGCCCATGAACTGACTCATGGGTTGTGTTTGTATAGCCTAGGGTTCTAAACCCAAGCATATGTATGTTAAGTGGGCTTTCTTCTCTCCTGGCTATAGGTTTGATATCCTATGGACTACTTGAATCTAAGTTTTTCAAACTCATTCTTCAAGCCACGTATTTACTTCTGCAAACCACAAACCTATAAATGGAATACACCCATATAAACTCAGTTTTCCACCATTCAAATCCTTCTTACATTCTATACAAGATCAAGCTTTTCAACCTCATTTGACGTAAGCCTACACGTGTTAAAACAGTTAGTCAAACAATCCTTTATGAAGTGGTCTTGGTTTCTAAAATCATGGGGCTTAATTCTTCATGTCAGTGGATCACAAGTGCTGTGTTGTTGCAGTCAATCATAGAGTTTATTGTAAGCTATCAAAGCTAAGCTATGAGCGAAGGCATCTAAAACAAGCTGAAACCTTGACATAATCATTTGGTCTTTTTGCAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAACGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCAGAATGCCAATTTAGCCTTCAACAAGGTTAGCAAAATATCTACAACAAAGTCAAGTCTGTTTATATTACTTTCTGGAAGTTTTGATCTTTGGTTAGAATGCACATTGGTTCACAAAGTACTAATGAGTATGAGTCAAACTCAACAACAAAAAGAATAAAATAAAAAATAAAATAAAAAGATCACTTAGAACATGACAGGATGTGTTTTATCTGGTATAAAAATTTAAGCATGCGCACCATAAATATATGACGGCATAGCTTCTATATCACAATATCGAAAAAGCATGATTTGTATGAACTTTTTACTTCGACAAATTACTGAATATGATGTAAACGATCAAAATTTCATTGTAACAAGTTTGGCCTTCTTTTTTCTTTAGGGCACATCAATCAAGCTCAATGCCATCATACACTATTTCATTTTTTCAAATGAAGTAGAAACGAGACCATCTAAAAAAACAATTTATTAGACCAAGATGTTCAAATTTTCAAATTTGAAAGATCAAAATGGAAACAAGCATGTAATTTAGGGACATATATTTTAGCCTTAAACCAGCTCATCTTTCTTGCTAGCAGCCCATTTGATGTAATATGATGAATGGTAAACAGGTGAACTCAAAATGTTTGTCAGGTTGGTGAGAAGTTAACTGATTCTTTGAGAAATTTCTGACTTTTATGTTTAACTTCTTGAGCAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACACATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGGTGGGTTATCTTTTAATAAATTATGCAGTAGTCAAGATAAGACAGAATGTAACATTTTGCAGAGCATAAAACTACCAAGAATTGATAGATTTAACCCTCCACAGAGTTCTAAACAATGGAACATTTTTGCATTGCAGTTACTAAGAATGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTAACAGGGCTTGTTGGACAGCTGAAGGGCCTTTGAGTTGAAAAAACAACCATCTGCATTGATCTCATTTATTCTAAGAATGACCAACTGTATTTTTTATAGTCTCCCCACCTATTCTTTCCCCTCCCAAATCTTTGCAATTAAAAGTCAAAGAAGCTGATTTTTCTTGTCATCTTCTCACTGAGTATCTGGTGTCAATGTTACTGAACTATGAATGGATAGATTCTTGGTTAATTTGAATGTTATTATTGATTATCCACGAAAA
mRNA sequence
AAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCTTCCTCTTCTTCACCTCCATTGTTAAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACAGTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATATGCTTCGTTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAGAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAGAGACAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAACGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCAGAATGCCAATTTAGCCTTCAACAAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACACATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGTTACTAAGAATGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTAACAGGGCTTGTTGGACAGCTGAAGGGCCTTTGAGTTGAAAAAACAACCATCTGCATTGATCTCATTTATTCTAAGAATGACCAACTGTATTTTTTATAGTCTCCCCACCTATTCTTTCCCCTCCCAAATCTTTGCAATTAAAAGTCAAAGAAGCTGATTTTTCTTGTCATCTTCTCACTGAGTATCTGGTGTCAATGTTACTGAACTATGAATGGATAGATTCTTGGTTAATTTGAATGTTATTATTGATTATCCACGAAAA
Coding sequence (CDS)
ATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCTTCCTCTTCTTCACCTCCATTGTTAAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACAGTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATATGCTTCGTTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAGAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAGAGACAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAACGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCAGAATGCCAATTTAGCCTTCAACAAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACACATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGTTACTAAGAATGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTAACAGGGCTTGTTGGACAGCTGAAGGGCCTTTGA
Protein sequence
MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL
Homology
BLAST of PI0024802 vs. ExPASy Swiss-Prot
Match:
O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)
HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = 0
Query: 64 KRTLSICFVSSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 123
+R LS+ F+SS + LV + DANAAILEADDDEELLEKVK+DRKKR+ERQ V++S
Sbjct: 45 RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNS 104
Query: 124 ANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEK 183
A KEKGYLQ+LVYKLSKVGQAI+NND A VLG D +WV+ NLAF KLS+SPEE
Sbjct: 105 AVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEEN 164
Query: 184 SEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
+EV+ FNSSLASLI+SV KND+ESSK AFV+SA AFEKWT LTGL+ QLKGL
Sbjct: 165 TEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216
BLAST of PI0024802 vs. ExPASy TrEMBL
Match:
A0A5A7V8J2 (Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00360 PE=4 SV=1)
HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 224/234 (95.73%), Postives = 230/234 (98.29%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTPSSSSSSS--SSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSK 60
MATSFLSTANTFHSSTPSSSSSSS SSPPLLRSRFGCLYCHNN+KRLVICKSSSDPPSK
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
Query: 61 IPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
IPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61 IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120
Query: 121 SSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
SSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
Query: 181 EKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
EKSEVD FNSSLASLISSVTK+DVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234
BLAST of PI0024802 vs. ExPASy TrEMBL
Match:
A0A1S3C541 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497128 PE=4 SV=1)
HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 224/234 (95.73%), Postives = 230/234 (98.29%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTPSSSSSSS--SSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSK 60
MATSFLSTANTFHSSTPSSSSSSS SSPPLLRSRFGCLYCHNN+KRLVICKSSSDPPSK
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
Query: 61 IPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
IPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61 IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120
Query: 121 SSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
SSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
Query: 181 EKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
EKSEVD FNSSLASLISSVTK+DVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234
BLAST of PI0024802 vs. ExPASy TrEMBL
Match:
A0A0A0LI29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1)
HSP 1 Score: 405.2 bits (1040), Expect = 1.8e-109
Identity = 221/238 (92.86%), Postives = 227/238 (95.38%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTPSSSSSSSSS------PPLLRSRFGCLYCHNNSKRLVICKSSSD 60
MAT+FLSTANTFHSSTPSS SSSSSS PPL+RSRFGCLYCHNN+KRLVICKSSSD
Sbjct: 1 MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60
Query: 61 PPSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
PPSKIPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61 PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120
Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLS 180
QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180
Query: 181 SSPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
SSPEEKSEVD FNSSLASLISSVTKNDVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238
BLAST of PI0024802 vs. ExPASy TrEMBL
Match:
A0A6J1KEL3 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493636 PE=4 SV=1)
HSP 1 Score: 385.6 bits (989), Expect = 1.5e-103
Identity = 209/235 (88.94%), Postives = 224/235 (95.32%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTP---SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPS 60
MATSFLSTANTFHSS+P SSSSSSSSSPPLLRSRF CL C NN++R VICK ++DPPS
Sbjct: 1 MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPS 60
Query: 61 KIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
KIP+LTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61 KIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
Query: 121 ISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSP 180
ISSANKEKGYLQE+V+KLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLS+SP
Sbjct: 121 ISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSP 180
Query: 181 EEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
EEKSEVD FNSSLASLISSVT+NDV+SSKTAFVASASA EKWTAL GLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235
BLAST of PI0024802 vs. ExPASy TrEMBL
Match:
A0A6J1G2S1 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450272 PE=4 SV=1)
HSP 1 Score: 383.3 bits (983), Expect = 7.4e-103
Identity = 210/236 (88.98%), Postives = 222/236 (94.07%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTP----SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPP 60
MATSFLSTANTFHSSTP SSSSSSSSSPPLLRSRF CL NN++RLVICK ++DPP
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60
Query: 61 SKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
S+IP LTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61 SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
Query: 121 VISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSS 180
VISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
Query: 181 PEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
PEEKSEVD FNSSLASLISSVT+NDV+SSKTAFVA ASA EKWTAL GLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236
BLAST of PI0024802 vs. NCBI nr
Match:
XP_008457444.1 (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA0063500.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa] >TYJ97826.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa])
HSP 1 Score: 411.8 bits (1057), Expect = 4.0e-111
Identity = 224/234 (95.73%), Postives = 230/234 (98.29%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTPSSSSSSS--SSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSK 60
MATSFLSTANTFHSSTPSSSSSSS SSPPLLRSRFGCLYCHNN+KRLVICKSSSDPPSK
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
Query: 61 IPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
IPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61 IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120
Query: 121 SSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
SSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
Query: 181 EKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
EKSEVD FNSSLASLISSVTK+DVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234
BLAST of PI0024802 vs. NCBI nr
Match:
XP_004139301.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus] >KGN60689.1 hypothetical protein Csa_019422 [Cucumis sativus])
HSP 1 Score: 405.2 bits (1040), Expect = 3.8e-109
Identity = 221/238 (92.86%), Postives = 227/238 (95.38%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTPSSSSSSSSS------PPLLRSRFGCLYCHNNSKRLVICKSSSD 60
MAT+FLSTANTFHSSTPSS SSSSSS PPL+RSRFGCLYCHNN+KRLVICKSSSD
Sbjct: 1 MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60
Query: 61 PPSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
PPSKIPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61 PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120
Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLS 180
QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180
Query: 181 SSPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
SSPEEKSEVD FNSSLASLISSVTKNDVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238
BLAST of PI0024802 vs. NCBI nr
Match:
XP_038889145.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida])
HSP 1 Score: 399.4 bits (1025), Expect = 2.1e-107
Identity = 217/237 (91.56%), Postives = 227/237 (95.78%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTP-----SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDP 60
MATSFLSTANTFHSSTP SSSSSSSSSPPLLRSRFGCL+CHNN+KRLVICK +DP
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSSSSSSSPPLLRSRFGCLHCHNNTKRLVICKGINDP 60
Query: 61 PSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120
PS+IPALTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ
Sbjct: 61 PSQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120
Query: 121 GVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSS 180
GVISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+NANLAFNKLSS
Sbjct: 121 GVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANLAFNKLSS 180
Query: 181 SPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
SPEEKSEVD FNSSLASLISSVT+NDVESSKTAFVASASA EKWTA+ GLVGQLKGL
Sbjct: 181 SPEEKSEVDAFNSSLASLISSVTQNDVESSKTAFVASASALEKWTAMVGLVGQLKGL 237
BLAST of PI0024802 vs. NCBI nr
Match:
XP_023545851.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545852.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545854.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 394.0 bits (1011), Expect = 8.7e-106
Identity = 211/232 (90.95%), Postives = 223/232 (96.12%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSKIP 60
MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRF CL C NN++RLVICK ++DPPS+IP
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPPSQIP 60
Query: 61 ALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 120
LTKR+LSICF+S FIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS
Sbjct: 61 TLTKRSLSICFISGFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 120
Query: 121 ANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEK 180
ANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLSSSPEEK
Sbjct: 121 ANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSPEEK 180
Query: 181 SEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
SEVD FNSSLASLISSVT+NDV+SSKTAFVASASA EKWTAL GLVGQLKGL
Sbjct: 181 SEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 232
BLAST of PI0024802 vs. NCBI nr
Match:
KAG6599393.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 389.8 bits (1000), Expect = 1.6e-104
Identity = 212/236 (89.83%), Postives = 224/236 (94.92%), Query Frame = 0
Query: 1 MATSFLSTANTFHSSTP----SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPP 60
MATSFLSTANTFHSSTP SSSSSSSSSPPLLRSRF CL C NN++RLVICK ++DPP
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60
Query: 61 SKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
S+IP LTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61 SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
Query: 121 VISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSS 180
VISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180
Query: 181 PEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
PEEKSEVD FNSSLASLISSVT+NDV+SSKTAFVASASA EKWTAL GLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
BLAST of PI0024802 vs. TAIR 10
Match:
AT4G02530.1 (chloroplast thylakoid lumen protein )
HSP 1 Score: 209.5 bits (532), Expect = 2.8e-54
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = 0
Query: 64 KRTLSICFVSSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 123
+R LS+ F+SS + LV + DANAAILEADDDEELLEKVK+DRKKR+ERQ V++S
Sbjct: 45 RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNS 104
Query: 124 ANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEK 183
A KEKGYLQ+LVYKLSKVGQAI+NND A VLG D +WV+ NLAF KLS+SPEE
Sbjct: 105 AVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEEN 164
Query: 184 SEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
+EV+ FNSSLASLI+SV KND+ESSK AFV+SA AFEKWT LTGL+ QLKGL
Sbjct: 165 TEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| O22773 | 4.0e-53 | 69.19 | Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V8J2 | 1.9e-111 | 95.73 | Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
| A0A1S3C541 | 1.9e-111 | 95.73 | thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... | [more] |
| A0A0A0LI29 | 1.8e-109 | 92.86 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1 | [more] |
| A0A6J1KEL3 | 1.5e-103 | 88.94 | thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN... | [more] |
| A0A6J1G2S1 | 7.4e-103 | 88.98 | thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008457444.1 | 4.0e-111 | 95.73 | PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA... | [more] |
| XP_004139301.1 | 3.8e-109 | 92.86 | thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus] >KGN60689.1 ... | [more] |
| XP_038889145.1 | 2.1e-107 | 91.56 | thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida] | [more] |
| XP_023545851.1 | 8.7e-106 | 90.95 | thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub... | [more] |
| KAG6599393.1 | 1.6e-104 | 89.83 | Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G02530.1 | 2.8e-54 | 69.19 | chloroplast thylakoid lumen protein | [more] |
