PI0024802.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0024802.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	thylakoid lumenal 16.5 kDa protein, chloroplastic
Location	chr05: 1333593 .. 1336609 (-)
Sequence length	959
RNA-Seq Expression	PI0024802.1
Synteny	PI0024802.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCTTCCTCTTCTTCACCTCCATTGTTAAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACAGTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATATGCTTCGTTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAGAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAGAGACAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGTTTTGTATGCATTCTACCTGTTTGTGTTTTGTTTTCTGTGAAACTTCCAACTTGGAAATTTGATCGTAGCTATGAATATGTTTAGATTGTCCAATTGGGTTCTTTGTTTCGATTCACAAATGTGCTCATTTTAGTTCCTTATAATAGTTGCATGTCCCTTTCTTTTTTCTTGCAACTACTATAAGAATGAAAATGTGAGAGCACATAACACCAATCTTTCTCTGTGCTGGTGATTATTAGGTTGTTATATGGTAGAGGAAAATTTTAAGATGAAGTTGTTAGGAGAACTCAATAGAAAACAAGAAAACAAATCAGTGCGGAACCAATTACTTATGTTCTGTTTCTAACCATTTAGTTTTTCAAAAACAAGCTTATGAACACTACTTCCATGTGTTCTTAAGAAAGGACAAAAGACTTACCTAAAAATTGCAAGTAAATAGACATAATGTTCAAAAACTTAAAACCAAAAATAAAATGATTGTCAAACGGAATATTGTTGCTTTGCAACTCTTGCATGAAAAAGCTAATTCAGCAATACATAAATGGACATGGAAAAATAGAGGGGCGGGGATATAAGAAGAATTGTGGAGAGAAACAATAAGGATAACTAATTTTTTCTAATGAGCAAAATCTACCATACAAACACAGACTCATACAAATATATTGATGGGGGTCATTCATGGAGATGGTAGATCTTTTCCCTGTTGATAAATGGAAAGATACATCAAATTATTAGGAGAACTGAAAGTAATTTATTCATGCCCATGAACTGACTCATGGGTTGTGTTTGTATAGCCTAGGGTTCTAAACCCAAGCATATGTATGTTAAGTGGGCTTTCTTCTCTCCTGGCTATAGGTTTGATATCCTATGGACTACTTGAATCTAAGTTTTTCAAACTCATTCTTCAAGCCACGTATTTACTTCTGCAAACCACAAACCTATAAATGGAATACACCCATATAAACTCAGTTTTCCACCATTCAAATCCTTCTTACATTCTATACAAGATCAAGCTTTTCAACCTCATTTGACGTAAGCCTACACGTGTTAAAACAGTTAGTCAAACAATCCTTTATGAAGTGGTCTTGGTTTCTAAAATCATGGGGCTTAATTCTTCATGTCAGTGGATCACAAGTGCTGTGTTGTTGCAGTCAATCATAGAGTTTATTGTAAGCTATCAAAGCTAAGCTATGAGCGAAGGCATCTAAAACAAGCTGAAACCTTGACATAATCATTTGGTCTTTTTGCAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAACGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCAGAATGCCAATTTAGCCTTCAACAAGGTTAGCAAAATATCTACAACAAAGTCAAGTCTGTTTATATTACTTTCTGGAAGTTTTGATCTTTGGTTAGAATGCACATTGGTTCACAAAGTACTAATGAGTATGAGTCAAACTCAACAACAAAAAGAATAAAATAAAAAATAAAATAAAAAGATCACTTAGAACATGACAGGATGTGTTTTATCTGGTATAAAAATTTAAGCATGCGCACCATAAATATATGACGGCATAGCTTCTATATCACAATATCGAAAAAGCATGATTTGTATGAACTTTTTACTTCGACAAATTACTGAATATGATGTAAACGATCAAAATTTCATTGTAACAAGTTTGGCCTTCTTTTTTCTTTAGGGCACATCAATCAAGCTCAATGCCATCATACACTATTTCATTTTTTCAAATGAAGTAGAAACGAGACCATCTAAAAAAACAATTTATTAGACCAAGATGTTCAAATTTTCAAATTTGAAAGATCAAAATGGAAACAAGCATGTAATTTAGGGACATATATTTTAGCCTTAAACCAGCTCATCTTTCTTGCTAGCAGCCCATTTGATGTAATATGATGAATGGTAAACAGGTGAACTCAAAATGTTTGTCAGGTTGGTGAGAAGTTAACTGATTCTTTGAGAAATTTCTGACTTTTATGTTTAACTTCTTGAGCAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACACATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGGTGGGTTATCTTTTAATAAATTATGCAGTAGTCAAGATAAGACAGAATGTAACATTTTGCAGAGCATAAAACTACCAAGAATTGATAGATTTAACCCTCCACAGAGTTCTAAACAATGGAACATTTTTGCATTGCAGTTACTAAGAATGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTAACAGGGCTTGTTGGACAGCTGAAGGGCCTTTGAGTTGAAAAAACAACCATCTGCATTGATCTCATTTATTCTAAGAATGACCAACTGTATTTTTTATAGTCTCCCCACCTATTCTTTCCCCTCCCAAATCTTTGCAATTAAAAGTCAAAGAAGCTGATTTTTCTTGTCATCTTCTCACTGAGTATCTGGTGTCAATGTTACTGAACTATGAATGGATAGATTCTTGGTTAATTTGAATGTTATTATTGATTATCCACGAAAA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCTTCCTCTTCTTCACCTCCATTGTTAAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACAGTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATATGCTTCGTTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAGAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAGAGACAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAACGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCAGAATGCCAATTTAGCCTTCAACAAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACACATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGTTACTAAGAATGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTAACAGGGCTTGTTGGACAGCTGAAGGGCCTTTGAGTTGAAAAAACAACCATCTGCATTGATCTCATTTATTCTAAGAATGACCAACTGTATTTTTTATAGTCTCCCCACCTATTCTTTCCCCTCCCAAATCTTTGCAATTAAAAGTCAAAGAAGCTGATTTTTCTTGTCATCTTCTCACTGAGTATCTGGTGTCAATGTTACTGAACTATGAATGGATAGATTCTTGGTTAATTTGAATGTTATTATTGATTATCCACGAAAA

Coding sequence (CDS)

ATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCTTCCTCTTCTTCACCTCCATTGTTAAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACAGTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATATGCTTCGTTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAGAAGGTGAAGAAGGATAGAAAGAAGAGGCTCGAGAGACAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATAATAACGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCAGAATGCCAATTTAGCCTTCAACAAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACACATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGTTACTAAGAATGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTAACAGGGCTTGTTGGACAGCTGAAGGGCCTTTGA

Protein sequence

MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL

Homology

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BLAST of PI0024802.1 vs. ExPASy Swiss-Prot
Match: O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 64  KRTLSICFVSSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 123
           +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+ERQ V++S
Sbjct: 45  RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNS 104

Query: 124 ANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEK 183
           A KEKGYLQ+LVYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF KLS+SPEE 
Sbjct: 105 AVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEEN 164

Query: 184 SEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           +EV+ FNSSLASLI+SV KND+ESSK AFV+SA AFEKWT LTGL+ QLKGL
Sbjct: 165 TEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

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BLAST of PI0024802.1 vs. ExPASy TrEMBL
Match: A0A5A7V8J2 (Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00360 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 224/234 (95.73%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS--SSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSK 60
           MATSFLSTANTFHSSTPSSSSSSS  SSPPLLRSRFGCLYCHNN+KRLVICKSSSDPPSK
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
           IPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
           SSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           EKSEVD FNSSLASLISSVTK+DVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

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BLAST of PI0024802.1 vs. ExPASy TrEMBL
Match: A0A1S3C541 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497128 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 224/234 (95.73%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS--SSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSK 60
           MATSFLSTANTFHSSTPSSSSSSS  SSPPLLRSRFGCLYCHNN+KRLVICKSSSDPPSK
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
           IPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
           SSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           EKSEVD FNSSLASLISSVTK+DVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

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BLAST of PI0024802.1 vs. ExPASy TrEMBL
Match: A0A0A0LI29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.8e-109
Identity = 221/238 (92.86%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSS------PPLLRSRFGCLYCHNNSKRLVICKSSSD 60
           MAT+FLSTANTFHSSTPSS SSSSSS      PPL+RSRFGCLYCHNN+KRLVICKSSSD
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
           PPSKIPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLS 180
           QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           SSPEEKSEVD FNSSLASLISSVTKNDVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

[Close]

BLAST of PI0024802.1 vs. ExPASy TrEMBL
Match: A0A6J1KEL3 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493636 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.5e-103
Identity = 209/235 (88.94%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTP---SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPS 60
           MATSFLSTANTFHSS+P   SSSSSSSSSPPLLRSRF CL C NN++R VICK ++DPPS
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPS 60

Query: 61  KIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           KIP+LTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  KIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSP 180
           ISSANKEKGYLQE+V+KLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLS+SP
Sbjct: 121 ISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSP 180

Query: 181 EEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           EEKSEVD FNSSLASLISSVT+NDV+SSKTAFVASASA EKWTAL GLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of PI0024802.1 vs. ExPASy TrEMBL
Match: A0A6J1G2S1 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450272 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.4e-103
Identity = 210/236 (88.98%), Postives = 222/236 (94.07%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTP----SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPP 60
           MATSFLSTANTFHSSTP    SSSSSSSSSPPLLRSRF CL   NN++RLVICK ++DPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  SKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           S+IP LTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSS 180
           VISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           PEEKSEVD FNSSLASLISSVT+NDV+SSKTAFVA ASA EKWTAL GLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236

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BLAST of PI0024802.1 vs. NCBI nr
Match: XP_008457444.1 (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA0063500.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa] >TYJ97826.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 411.8 bits (1057), Expect = 4.0e-111
Identity = 224/234 (95.73%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS--SSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSK 60
           MATSFLSTANTFHSSTPSSSSSSS  SSPPLLRSRFGCLYCHNN+KRLVICKSSSDPPSK
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
           IPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
           SSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           EKSEVD FNSSLASLISSVTK+DVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]

BLAST of PI0024802.1 vs. NCBI nr
Match: XP_004139301.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus] >KGN60689.1 hypothetical protein Csa_019422 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 3.8e-109
Identity = 221/238 (92.86%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSS------PPLLRSRFGCLYCHNNSKRLVICKSSSD 60
           MAT+FLSTANTFHSSTPSS SSSSSS      PPL+RSRFGCLYCHNN+KRLVICKSSSD
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
           PPSKIPALTKRTLSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLS 180
           QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           SSPEEKSEVD FNSSLASLISSVTKNDVESSKTAFVASASAFEKWTAL GLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

[Close]

BLAST of PI0024802.1 vs. NCBI nr
Match: XP_038889145.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 399.4 bits (1025), Expect = 2.1e-107
Identity = 217/237 (91.56%), Postives = 227/237 (95.78%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTP-----SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDP 60
           MATSFLSTANTFHSSTP     SSSSSSSSSPPLLRSRFGCL+CHNN+KRLVICK  +DP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSSPPLLRSRFGCLHCHNNTKRLVICKGINDP 60

Query: 61  PSKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120
           PS+IPALTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ
Sbjct: 61  PSQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120

Query: 121 GVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSS 180
           GVISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGSSDADWV+NANLAFNKLSS
Sbjct: 121 GVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANLAFNKLSS 180

Query: 181 SPEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           SPEEKSEVD FNSSLASLISSVT+NDVESSKTAFVASASA EKWTA+ GLVGQLKGL
Sbjct: 181 SPEEKSEVDAFNSSLASLISSVTQNDVESSKTAFVASASALEKWTAMVGLVGQLKGL 237

[Close]

BLAST of PI0024802.1 vs. NCBI nr
Match: XP_023545851.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545852.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545854.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.0 bits (1011), Expect = 8.7e-106
Identity = 211/232 (90.95%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPPSKIP 60
           MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRF CL C NN++RLVICK ++DPPS+IP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPPSQIP 60

Query: 61  ALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 120
            LTKR+LSICF+S FIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS
Sbjct: 61  TLTKRSLSICFISGFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 120

Query: 121 ANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEK 180
           ANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLSSSPEEK
Sbjct: 121 ANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSPEEK 180

Query: 181 SEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           SEVD FNSSLASLISSVT+NDV+SSKTAFVASASA EKWTAL GLVGQLKGL
Sbjct: 181 SEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 232

[Close]

BLAST of PI0024802.1 vs. NCBI nr
Match: KAG6599393.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 389.8 bits (1000), Expect = 1.6e-104
Identity = 212/236 (89.83%), Postives = 224/236 (94.92%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTP----SSSSSSSSSPPLLRSRFGCLYCHNNSKRLVICKSSSDPP 60
           MATSFLSTANTFHSSTP    SSSSSSSSSPPLLRSRF CL C NN++RLVICK ++DPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60

Query: 61  SKIPALTKRTLSICFVSSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
           S+IP LTKR+LSICF+SSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSS 180
           VISSANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLGGS+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           PEEKSEVD FNSSLASLISSVT+NDV+SSKTAFVASASA EKWTAL GLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of PI0024802.1 vs. TAIR 10
Match: AT4G02530.1 (chloroplast thylakoid lumen protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-54
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 64  KRTLSICFVSSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 123
           +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+ERQ V++S
Sbjct: 45  RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNS 104

Query: 124 ANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVQNANLAFNKLSSSPEEK 183
           A KEKGYLQ+LVYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF KLS+SPEE 
Sbjct: 105 AVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEEN 164

Query: 184 SEVDTFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALTGLVGQLKGL 233
           +EV+ FNSSLASLI+SV KND+ESSK AFV+SA AFEKWT LTGL+ QLKGL
Sbjct: 165 TEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

The following BLAST results are available for this feature:

BLAST of PI0024802.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22773	4.0e-53	69.19	Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of PI0024802.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8J2	1.9e-111	95.73	Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C541	1.9e-111	95.73	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LI29	1.8e-109	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1	[more]
A0A6J1KEL3	1.5e-103	88.94	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1G2S1	7.4e-103	88.98	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of PI0024802.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457444.1	4.0e-111	95.73	PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA...	[more]
XP_004139301.1	3.8e-109	92.86	thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus] >KGN60689.1 ...	[more]
XP_038889145.1	2.1e-107	91.56	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_023545851.1	8.7e-106	90.95	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub...	[more]
KAG6599393.1	1.6e-104	89.83	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of PI0024802.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02530.1	2.8e-54	69.19	chloroplast thylakoid lumen protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR038862	Chloroplast thylakoid lumenal protein MPH2	PANTHER	PTHR35742	THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..232

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0024802	PI0024802	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024802.1-exon	PI0024802.1-exon-chr05:1333593..1333931	exon
PI0024802.1-exon	PI0024802.1-exon-chr05:1334069..1334141	exon
PI0024802.1-exon	PI0024802.1-exon-chr05:1334811..1334950	exon
PI0024802.1-exon	PI0024802.1-exon-chr05:1336203..1336609	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024802.1-three_prime_utr	PI0024802.1-three_prime_utr-chr05:1333593..1333821	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024802.1-cds	PI0024802.1-cds-chr05:1333822..1333931	CDS
PI0024802.1-cds	PI0024802.1-cds-chr05:1334069..1334141	CDS
PI0024802.1-cds	PI0024802.1-cds-chr05:1334811..1334950	CDS
PI0024802.1-cds	PI0024802.1-cds-chr05:1336203..1336578	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024802.1-five_prime_utr	PI0024802.1-five_prime_utr-chr05:1336579..1336609	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0024802.1	PI0024802.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010206	photosystem II repair