PI0022057 (gene) Melon (PI 482460) v1

Overview
NamePI0022057
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionIntegrase, catalytic core
Locationchr07: 7212226 .. 7217871 (-)
RNA-Seq ExpressionPI0022057
SyntenyPI0022057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATTAGTTTGAAAAATCCTTGTTTTGATTGTTCCCCTCAACCAGAGAACGTCATCAGTATAAAAAAAAGTACCCCAACCAACAAATCTTTTCCAACATCAATCAAGAAAAACCCCCAATGGTTCAAGGCCTTCCCAAAATTCTTTAGAAAAGGATGCACATTCTTTCGCAATGCTTGGCCAACCTTGGCAAATTCAGATATTTTGGAAGAAAGTTGCGTGAAGATTCTGTTAGACCCCCTGTTATTCATAAATACAATAGAAGGGGTAAAAGGGTAAATGGACAGTAGACAGACTCTGGAGAGAGAAATTGGGTGGAGAATATCACTGGAGGGGTCCACTAATCATTAGACTATAAATAGAAAAAGGTCTTGGGATTGTGGAGCTAGGGTTTTTGTGTAGAAAAGACAACTAGGTCTTTTGGGGAGAAGTTTCCAACCTTCTCAAAGGTGCTGGAATTTCGTTTTTTTCTTCTTATTTTGGTATGAACGGTTGTTAAAGCTTCCTTGTTGATAAATAATAGTACCAGTAGAGGCATTGCCTCTATTTTCTGGGTGTTTTGTGTGATTATTTAGCATTAAAAGAGAAGGAGGTCTAACATTTGGTATTAGAGCCCAAAATTTTGGGGGTGGTGACAAAAGCTATGGCAAACAAGCAAATGGATGAGCGACTGGAAAATACAGAGAAAGAAGTCCTGGGTTTGAAAGAGATGATGCTGGAAATGAAGAAAGCATTTGATCGGCTATCTGAAGACCTGAAAGAGGGAAGTTCTTACCGAAAGAGAGAAGAATCTGGTACTTCTGATGGTTCCACCTTGAAGTTGAAAGGGAAGATGAATGAGTCGGAAATCACAGGAGAGATGGGTGGAGGGACTGTGGACAGAAGTAAGTATAAAAAGCTGGAAATGCCATTATTCGTGGGAGAGAATCCAGAATCTTGGGTGTACAGAGCAGAACACTTCTTTGAGATTAATGAACTAAATGAAACAGAGAACGTAAAGGTTGCAGTCGTCAGTTTTGGACAGGATGAAATTAACTGGTTTCGATGGTCCAACAACAGAAAAAGGGTTGAATCATGGGCGGACTTGAAGGAAAGAATGTTCGATCACTTTAGTGACCAAGGCCCAAGGAGTTTGGGGGCAAGGCTAATTCGCATAACTCAGGATGGTACTTACAATGATTATGTGAAAAAGTTTCTTAATTATTCGGGAGGAACAGAAAAAGGGAATGCAAACAGACCTGAGTTTCAGATGAAACAAGTTGCTATTCTAGTGAAGGGAAGCTATGGAAGGGGAGAACCGCCACTTAAGAGACTGTCCGATACAGAATTCAGAGATAGATTGGACAAGGGTCTGTGCTTTCGATGCAATGACAAGTATTCACCAGGGCACTGTTGTAAAAGAGAGAAAAAAGGGAAATGATGTTACTCATCTTGAACGAAGAGGAGGGAGAGATGGAAGAAGGAAGAGAAAAAATAGTGGAGTTGAAAACCTTAGAGGATGCTGAGGTAGAATTGAGAACTATTATGGGTTTCCCAGCAAAGGGCACCATGAAGATACTGGGAAAGATTAAGAGCAGGGAGGTCATTGTGTTAATTGATAGTTGAGCCACCTATAACTGCATTCACCAAAATTTAGTAGAAGAATTAAAACTGCCTGTGACCCCAGGGACTGCCTTTGGAGTAACAATAGGAGATGGATCTGATCGAAAGGGAAGGGGAATTTGCAAAAGGGTGGAAGTCAAACTGTCCGAGCTGACCCTAATTGCTGACTTCTTGGCAGTGGAATTGGGAAAAATAGACCTCATCCTCGGTATGCAATGGTTAGGCACAACTGGCTTCATGGGCATCCACTGGCCATCACTGGCCATGTTGTTTATGGTTGGGGATAAACCTATTATTCTCAAAGGGATCCAGCTCTAACAAAGATGAAGTGTTCTTTAAAGACAATTACTAAAACTTGAGAGGAAGAAGACCAAGCCTTTCTTCTTAAACTCCAAGATAGGGAGACAGAAGGGGAAATGGAAGAAGGGTTAGGGTAGAGGAAAAAGGGGGAGGAAGAGGAATTACCCATGATCCAATGCTGCTTATTGAAACAATATGCTGAGATTTTTAATCCTTCAACAGGTTTACCACCCAAAAGGGATAAACCATCAGATTTTGACTGTACCAGGATAGAGACCCATTAATGTGAGACCATATAAGTATGGACATTTGCAAAAGGAAGAGATTGAGAAGTTGGTTGAAGAAATGCTTCAAGCTGGAATTATCCGCCCCAGCCACAGCCCATACTCCAACCCAGTGCTCTTAGTAAAGAAAAGAGATGGGGGGATGGCGCTTCTGTGTTGATTACCGAAAACTGAACCAAGTGACTGTGGCTGAGAAATTTTCCATTCCAGTAATTGAAGAATTGTCGGATGAACTTCACAGGGCTACTGTCTTCTTGAAACTGGACCTACGTTTGGGCTACCACCAGATAAGAATGAAAGAGGAAGATGTGGGGAAGACAACCTTTCGTACTCATGAAGGACACTATGAGTTCTTGGTGATGCCCTTTGGCCTGACAAACACTGATGAACCAGGTATTTCGCCCATTCTTGAGACGCTTTGTATTAGTTCTTTTTTATGATATACTGGTATATAGCCCAAACGAGATGGAACATGAAAGACATTTGGGGATGGTGTTCTCAATCTTAAGGGAAAACCAACTTTTTGCCAATAGGAAGAAATGTACGATAGCTATGTCCAAAATACAATATCTTGGCCACTTGATATCAAACAAGGGAGTTGAGGCTGATGGAGAGAAAATCCAAGCAATGAAAGAGTGGCCCAAACCCAGAGATGTAACCAGTTTGAGGGGATTTTTGGGCCTCACGAGGTACTACAGAAGGTTTATTAAAATTATGGTGTGATTGCAGCTCCTTTGACTAAGTTGCTTCAGAAGAATGGATTCAAATGGGATGACCAAACAACTGTAGCTTTTGAACAACTAAAGAAAGCCATGATATCAGTTCTTGTATTAGCTTTGCCAGACTTGTCATTGCCCTTTGTAGTAGAAACTGATGCTTCTAGAACAGGTTTAGGGGTTGTCCTATCCCAAAATGGCCATCCTATAGCTTTCTTCAGTAAAAAACTATCTCCTCGAACACAAACTAAATCTATTTACGAAAGGGAATTGATGGCAGTGGTCCTAGCCGTTCAGAGATGGAGACATTATGTTTTGGGACATCGTTTCATAGTGATATCAGATCAGAAGGCGTTTAAATTCTTGCTGGAACAGAGGGAAGTCCAACCTCAATTTCAGAAGTGGCTCACCAAACTTCTAGGCTACGATTTTGAAATCTTATACCAATCAGGCTTGCAGAATAAAGCAGCAGATGCCCTCTCAAGAGTGGAACCAAGGAAAGCTACTGAGGCTGAACTGTCCACCATGTCCACCTTGGGGTTACTAAGTACTGAAGCCATTCAGAAGGAAGTGAAAGAAGACCCTGATTTGCAGAAACTGGTTGATAACCTGAAACTGAACCTAGAGGCTCATCCTAAGTACAAATGGGATAGGGAACGGTTGTGGTACAAAAATAGATTGGTAATTCCCAAGCACTCACCTATAATACCAACTCTGCTGCACACTTTTCATGATTCCATCATGGGAGGCCATTTGGGGTTTCTAAGAACCTATAAAAGGTTGACAGGGGAACTGTACTAGGAGGGGATGAAATTGGATGTCAAGAAGTATGTTGAGCAACGTGAAATATGTCAGCGTAATAAAACAGATTCCGCATTTCCATCTGGCTTACTACAACCTATCCCTATTCCAGATTTAATCTTGGAAGAATGGTCAATGGATTTTGTGGAAGGACTACCTATGTCAGGGCACATGAATGTGATCATGGTTGTGGTGGACCGGCTGAGCAAATATGCCTACTTTATTACCCTCAAACATCTGTTCACAGCCAAACAGGTTGCAGCAGCTTTCATTGAGAGAATAATAAGTAAGCACGGGATACCTAAATCTATCATTACAAACAGGGACAAAATATTCCTCAGTAGTTTTTGGAAGGAGCTATTTTCTGTCATGGGGACCTCCTTAAGAAGAAGCACAACCTTTCATCCCCAAACAGATGGCCAAACAGAGCGAGTGAACCGTTGCCTAGAAACATATCTTAGATGTTTCAGTAATGAACAGCCGCAAACATGGCAGAGGTTCATACCTTGGGCTGAACTTTGGTACAATACCACCTTTCACACCTTAGTCAAGACCACTTCTTTTCAGGTTGTGTATGGAAGACCACCACCCCCCTAGTATCCTACGGGAGTAGAAAATCACCTAATAATGAAGTGGATGCATTACTTCATGAGAGAGACCTTTCCATTAGTGCCTTAAAAGAAAATCTGAAAGTGGCGCAAAACAGAATGAAGAAATTTACAGACCTTAAAAGGAAGGAAATCTAGTTTAAGGTGGGAAATGAGGTCTTCCTAAAACTCAGGCCCTACAGGCAACGTTCACTGGCAAGGAAGAGGAGTGAAAAACTAGCCCCGAAATACTATGGTCCCTACGAAATCCTTGAAAAGATTGGAATGGTAGCTTATCGGTTGAACCTTCCTTAAAAAGCAGTAATACATAATGTCTTCCATGTCTCACAACTCAAACGCAAATTGGGGCAGAAACATCAGGTTCAACAGATTCCTCCTAAGCTGACTGAAGGTTTTGAATTACAGTTATGGCCAGAAACAGTTTTAGGCATCCGTTGGAACATAGAGTTAGGAGCGAATGAATGGCTTGTGAAGTGGAAGCACCTACCAGACAGTGAAGCTACATGGGAGTCTGTCTACCAAATGAACCAACGGTTTCCTGATTTTCACCTTCAGGACAAGGTGAACTTGGAACCCCGGGGTATTGTTAGACCCCCTATTATTCATAAATACAAAAGAAGGGGCAAAAGGGTAAATGAACAGCAGACATACTCTAGAGAGAGAAATTGGGTGGAAAATATCACTGGAGGGGCCCACTAATCATTAGACTATAAATAGAAAAAGGTCTTGGGATTGGGGAGCTAGGGTTTTTGTGTAGAAAAGACAACTAGGTCTTTTGCGGAGAAGTTTCTAGCCTTCTCAAAGGTGCTAGACTTGTATTTCGTTTTTTTCTTCTTATTTTGGTATGAACGGTTGTTAAAGCTTCCTTGTTGATAAATAATAGTACTAGTAGAGGCATTGCCTCTGTTTTCTGGGTGTTTTGTGTGATTATTTAGCATTAAAAGAGAAGGAGGCCTAACAGATTCTTACTCCCGGATTCACTTGTAACAGGTCAGGTAGTTCATCCTCTTCCTCTTCAAATGCTCAATTTCATCATTCTCCCTTCAAAATCCTAGGCTCAAATTGTGATTTTGGGAGATGTATCCCATGTCCATCCTCAACAAATTCAAGGGTAGTAAAGGAAGAGTCCAAGGATGAAGACTCAGTGTTCAGTGTCAGAGTGAAGAATTAATACCAGAAGATGAGTTTTGTATAGAGGAAGTAAAGGTGCAAAAGGGAGAGGTAGAGGACATAGATTCCTTTGGAGCTGAGTTTGCTAATTTATTTCTTTCACCAGAAAAAAAAAAAAAGAATCTGCCAAGGCAAAGGCTAACATCATTCCCCTCCATCTAG

mRNA sequence

ATGCTGATTAGTTTGAAAAATCCTTGTTTTGATTGTTCCCCTCAACCAGAGAACGTCATCAGTATAAAAAAAAGTACCCCAACCAACAAATCTTTTCCAACATCAATCAAGAAAAACCCCCAATGGTTCAAGGCCTTCCCAAAATTCTTTAGAAAAGGATGCACATTCTTTCGCAATGCTTGGCCAACCTTGGCAAATTCAGATATTTTGGAAGAAAGTTGCGTGAAGATTCTGTCAGGTAGTTCATCCTCTTCCTCTTCAAATGCTCAATTTCATCATTCTCCCTTCAAAATCCTAGGCTCAAATTGTGATTTTGGGAGATGTATCCCATGTCCATCCTCAACAAATTCAAGGGTAGTAAAGGAAGAGTCCAAGGATGAAGACTCAGTGTTCAATGAGTTTTGTATAGAGGAAGTAAAGGTGCAAAAGGGAGAGGTAGAGGACATAGATTCCTTTGGAGCTGAGTTTGCTAATTTATTTCTTTCACCAGAAAAAAAAAAAAAGAATCTGCCAAGGCAAAGGCTAACATCATTCCCCTCCATCTAG

Coding sequence (CDS)

ATGCTGATTAGTTTGAAAAATCCTTGTTTTGATTGTTCCCCTCAACCAGAGAACGTCATCAGTATAAAAAAAAGTACCCCAACCAACAAATCTTTTCCAACATCAATCAAGAAAAACCCCCAATGGTTCAAGGCCTTCCCAAAATTCTTTAGAAAAGGATGCACATTCTTTCGCAATGCTTGGCCAACCTTGGCAAATTCAGATATTTTGGAAGAAAGTTGCGTGAAGATTCTGTCAGGTAGTTCATCCTCTTCCTCTTCAAATGCTCAATTTCATCATTCTCCCTTCAAAATCCTAGGCTCAAATTGTGATTTTGGGAGATGTATCCCATGTCCATCCTCAACAAATTCAAGGGTAGTAAAGGAAGAGTCCAAGGATGAAGACTCAGTGTTCAATGAGTTTTGTATAGAGGAAGTAAAGGTGCAAAAGGGAGAGGTAGAGGACATAGATTCCTTTGGAGCTGAGTTTGCTAATTTATTTCTTTCACCAGAAAAAAAAAAAAAGAATCTGCCAAGGCAAAGGCTAACATCATTCCCCTCCATCTAG

Protein sequence

MLISLKNPCFDCSPQPENVISIKKSTPTNKSFPTSIKKNPQWFKAFPKFFRKGCTFFRNAWPTLANSDILEESCVKILSGSSSSSSSNAQFHHSPFKILGSNCDFGRCIPCPSSTNSRVVKEESKDEDSVFNEFCIEEVKVQKGEVEDIDSFGAEFANLFLSPEKKKKNLPRQRLTSFPSI
Homology
[Close]
BLAST of PI0022057 vs. ExPASy TrEMBL
Match: A0A5A7U808 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001400 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 81  SSSSSSSNAQFHHSPFKILGSNCDFGRCIPCPSSTNSRVVKEESKDEDSVFN-------- 140
           S+SSS S++  H SPFKI G NCDF R +  PSST S  V E S+DEDSV +        
Sbjct: 435 SASSSPSSSNVHFSPFKIPGLNCDFERGV--PSSTISSAVDEGSEDEDSVISVSSEELIP 494

Query: 141 --EFCIEEVKVQKGEVEDIDSFGAEFANLFLSPEKK 167
             + C EE +   GE +DIDSFG EFAN    PE+K
Sbjct: 495 EEDLCTEETETPSGEADDIDSFGPEFANSSFLPEQK 528

[Close]
BLAST of PI0022057 vs. NCBI nr
Match: KAA0051398.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-11
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 81  SSSSSSSNAQFHHSPFKILGSNCDFGRCIPCPSSTNSRVVKEESKDEDSVFN-------- 140
           S+SSS S++  H SPFKI G NCDF R +  PSST S  V E S+DEDSV +        
Sbjct: 435 SASSSPSSSNVHFSPFKIPGLNCDFERGV--PSSTISSAVDEGSEDEDSVISVSSEELIP 494

Query: 141 --EFCIEEVKVQKGEVEDIDSFGAEFANLFLSPEKK 167
             + C EE +   GE +DIDSFG EFAN    PE+K
Sbjct: 495 EEDLCTEETETPSGEADDIDSFGPEFANSSFLPEQK 528

The following BLAST results are available for this feature:
BLAST of PI0022057 vs.
Match NameE-valueIdentityDescription
BLAST of PI0022057 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8081.0e-1150.00Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of PI0022057 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051398.12.2e-1150.00Integrase, catalytic core [Cucumis melo var. makuwa][more]
BLAST of PI0022057 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022057.1PI0022057.1mRNA