PI0027959 (gene) Melon (PI 482460) v1

Overview


Name	PI0027959
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Dynein light chain
Location	chr01: 27716744 .. 27717998 (+)
RNA-Seq Expression	PI0027959
Synteny	PI0027959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACTTGGCTTCATTATTGGCCTCAGCACCTTTATCCTTTACCCATAATTATCTTTAGCGCAGGGAAAAGGGAAAGTAAGAGATAGAGAGAGAAAAAAAAGATTTTTCATTAATAGAATATTGTTAAAAGTCCTTAAAGTGGGGAGAGAAAATGACAGGAAAATAATATTTATCGGAATATGTACCAGCTTAAAACTTGAATTTCTAAAGATTCCATCACATTTGGAAGAGGGGCTTCCAGAGTCTTTCCTTGTATAAAATCATCATCCATTTACTTCCTTCTTCGTGTTTCTTTGTTCGATTATGCCCTTGGAAGAAGAAACACTTGAGTTTGGGATAAACTTTTCTGGGTTTTGAAGATAAGACTCAAAAGAGATCGCCGAGAGCATCCCTACCAGTTCTCTCTTTTCAGCAAAGGGGAAAGGATGTTGGAAGGTAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTTGACTGCAAATCCATTGCTGCCCACATAAAAAAGGTCCTCTCTCTTTCTCCCTCCCCTCGTTTGATGTGTATGTAGGAGAAAATGGTGGGTTGCAGATGTTTTTTTCTTGACTTTAATAGCAGAACCGTGTTGGTTCTGTGTCTGTGTAGAAGACAAGAGGTCGATAAGAGAATCTCAGGCTTTGATCTTTAAACTTGTTTGATTGTTGATTTGCAGGACTTCGACAACAAATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTCGGTTGTTTCTTCACCCACTCCAAGGGGTCTTTCATCTACTTCAAACTGGAGACCCTCAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGATTTTTAGTTGTGTTTTCTCTTTATTTGAATCTCTAGAGAGTTTGAGAAGCAGAAACAAAAAAGGAAAGGCTTTCTTTTTCCTTTCTTGTGGCTACGTCAATTCGATTGAAAGGGTAAGGTCGAATTGAAGAAGCGTAAGGGAGATGGTAGGAAATGTACAAATTGACATTGTGGAATTGTTTGGATGTTTATGTTCAAAAAGCTTTTAATGCTTTTGTGGGTATACTATGTAAATATTGAAATCATGGGGAGACGGTTCTTAATCCTTTTCACGTATTGTCGTTGCCCCTTTGCTTCGATTTCTATTTTCTGCAAAGATTGGCTAATTATTGGATAAAGAAAATCAATTACAG

mRNA sequence

GAAAAACTTGGCTTCATTATTGGCCTCAGCACCTTTATCCTTTACCCATAATTATCTTTAGCGCAGGGAAAAGGGAAAGTAAGAGATAGAGAGAGAAAAAAAAGATTTTTCATTAATAGAATATTGTTAAAAGTCCTTAAAGTGGGGAGAGAAAATGACAGGAAAATAATATTTATCGGAATATGTACCAGCTTAAAACTTGAATTTCTAAAGATTCCATCACATTTGGAAGAGGGGCTTCCAGAGTCTTTCCTTGTATAAAATCATCATCCATTTACTTCCTTCTTCGTGTTTCTTTGTTCGATTATGCCCTTGGAAGAAGAAACACTTGAGTTTGGGATAAACTTTTCTGGGTTTTGAAGATAAGACTCAAAAGAGATCGCCGAGAGCATCCCTACCAGTTCTCTCTTTTCAGCAAAGGGGAAAGGATGTTGGAAGGTAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTTGACTGCAAATCCATTGCTGCCCACATAAAAAAGGACTTCGACAACAAATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTCGGTTGTTTCTTCACCCACTCCAAGGGGTCTTTCATCTACTTCAAACTGGAGACCCTCAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGATTTTTAGTTGTGTTTTCTCTTTATTTGAATCTCTAGAGAGTTTGAGAAGCAGAAACAAAAAAGGAAAGGCTTTCTTTTTCCTTTCTTGTGGCTACGTCAATTCGATTGAAAGGGTAAGGTCGAATTGAAGAAGCGTAAGGGAGATGGTAGGAAATGTACAAATTGACATTGTGGAATTGTTTGGATGTTTATGTTCAAAAAGCTTTTAATGCTTTTGTGGGTATACTATGTAAATATTGAAATCATGGGGAGACGGTTCTTAATCCTTTTCACGTATTGTCGTTGCCCCTTTGCTTCGATTTCTATTTTCTGCAAAGATTGGCTAATTATTGGATAAAGAAAATCAATTACAG

Coding sequence (CDS)

ATGTTGGAAGGTAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTTGACTGCAAATCCATTGCTGCCCACATAAAAAAGGACTTCGACAACAAATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTCGGTTGTTTCTTCACCCACTCCAAGGGGTCTTTCATCTACTTCAAACTGGAGACCCTCAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGA

Protein sequence

MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

Homology

[Close]

BLAST of PI0027959 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          M E KA++++ DMP  MQ  A+D A++AL+ +++   K IAA+IKK+FD KY   W C+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of PI0027959 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          M++ KA++++ DM   MQ  A+D A++AL+ Y++   K IAA+IKK+FD KY   W C+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0027959 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD KY   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0027959 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-15
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          M + KA++++ DM  +MQ  A+D A++AL+ Y++   K IAA+IKK+FD KY   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0027959 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD KY   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of PI0027959 vs. ExPASy TrEMBL
Match: A0A5A7UW48 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002230 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.8e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 97
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 96

[Close]

BLAST of PI0027959 vs. ExPASy TrEMBL
Match: A0A1S3CGU5 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500588 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.8e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 97
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 96

[Close]

BLAST of PI0027959 vs. ExPASy TrEMBL
Match: A0A0A0K947 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_7G446940 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 97
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS P
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSGP 96

[Close]

BLAST of PI0027959 vs. ExPASy TrEMBL
Match: A0A6J1KDK4 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494671 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPSKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS 95
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of PI0027959 vs. ExPASy TrEMBL
Match: A0A6J1HH84 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111464299 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPSKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS 95
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of PI0027959 vs. NCBI nr
Match: XP_008462164.1 (PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo] >KAA0059304.1 dynein light chain LC6, flagellar outer arm-like [Cucumis melo var. makuwa] >TYK04024.1 dynein light chain LC6, flagellar outer arm-like [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 9.9e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 97
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 96

[Close]

BLAST of PI0027959 vs. NCBI nr
Match: XP_011659570.1 (dynein light chain LC6, flagellar outer arm [Cucumis sativus] >KGN45379.1 hypothetical protein Csa_016911 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 2.9e-47
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 97
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS P
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSGP 96

[Close]

BLAST of PI0027959 vs. NCBI nr
Match: XP_038897874.1 (dynein light chain LC6, flagellar outer arm-like [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 2.9e-47
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKAL+QDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALIQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 97
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP 96

[Close]

BLAST of PI0027959 vs. NCBI nr
Match: XP_022964212.1 (dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata] >XP_023000412.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima] >KAG6593463.1 hypothetical protein SDJN03_12939, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025803.1 hypothetical protein SDJN02_12301 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPSKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS 95
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of PI0027959 vs. NCBI nr
Match: XP_023513963.1 (dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVV
Sbjct: 1  MLEGKASVQDTDMPNKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDHRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS 95
          GSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVTSS 94

[Close]

BLAST of PI0027959 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-40
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DVFDCKSIA HIKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTS 94
          GSNFGCFFTHSKG+FIYF+LETL FLIFKG ++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93

[Close]

BLAST of PI0027959 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-37
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA V++TDMP KMQ+QAM  AS++LDL+DVFD  SIAAHIKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVT 93
          G+NFGCFFTHSKG+FIYF L TLNFLIFKG T
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

[Close]

BLAST of PI0027959 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60
          MLEGKA++ DTDM   M+  A+  ASKALD +DV +   IA  IKK+FD  YGSGWQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 91
          G++FG F TH  G FI+F + +L  L+FKG
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKG 90

[Close]

BLAST of PI0027959 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCV 60
          MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DVFDCKSIA HIKK+FD +YGSGWQCV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of PI0027959 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-17
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 12  DMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHS 71
           DMPG MQ  A   A   LD  + F  K +A ++KK+FD  YG  W C+VGS+FG F THS
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  KGSFIYFKLETLNFLIFK 90
            G FIYF ++ L  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of PI0027959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	8.0e-16	47.19	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q22799	1.4e-15	46.07	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
P61285	2.3e-15	44.94	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
Q24117	2.3e-15	46.07	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
P63167	2.3e-15	44.94	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of PI0027959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UW48	4.8e-48	100.00	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G0...	[more]
A0A1S3CGU5	4.8e-48	100.00	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500588 PE=3 SV=1	[more]
A0A0A0K947	1.4e-47	98.96	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_7G446940 PE=3 SV=1	[more]
A0A6J1KDK4	2.1e-43	94.68	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111494671 PE=3 SV=1	[more]
A0A6J1HH84	2.1e-43	94.68	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111464299 PE=3 SV=1	[more]

BLAST of PI0027959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462164.1	9.9e-48	100.00	PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo] >KAA0...	[more]
XP_011659570.1	2.9e-47	98.96	dynein light chain LC6, flagellar outer arm [Cucumis sativus] >KGN45379.1 hypoth...	[more]
XP_038897874.1	2.9e-47	97.92	dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]	[more]
XP_022964212.1	4.3e-43	94.68	dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]...	[more]
XP_023513963.1	4.3e-43	94.68	dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0027959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	4.8e-40	79.57	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	1.7e-37	78.26	Dynein light chain type 1 family protein	[more]
AT4G27360.1	3.1e-23	55.56	Dynein light chain type 1 family protein	[more]
AT1G52240.1	3.4e-22	77.97	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	9.7e-17	50.00	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.2E-42 score: 156.8
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 1.2E-31 score: 108.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..92
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.6E-31 score: 110.1
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..89
None	No IPR available	PANTHER	PTHR11886:SF78	DYNEIN LIGHT CHAIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0027959.1	PI0027959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding