Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGGTACGTATTTAAATATTGAATAATTACTTTAAATTATTTACTCAATTAACTATTCTCTAATTTTTTTACAATTCATAGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCACAATGTAGAAGAAGTACCTTCAATGACACTAACATAGAGTCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCATTTAGAGTAGGATATTGTGATTTTAAGGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGGCACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGCGCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
mRNA sequence
ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCACAATGTAGAAGAAGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGGCACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGCGCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Coding sequence (CDS)
ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCACAATGTAGAAGAAGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGGCACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGCGCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Protein sequence
MRLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH
Homology
BLAST of PI0006853 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 132/202 (65.35%), Postives = 144/202 (71.29%), Query Frame = 0
Query: 2 RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
RLYITR GA+VGHLRSNN RLRDVV+DPQQVLDICNNNERYMEKIH +Y++PIVPPPV+R
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHR 362
Query: 62 GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
R RVEE ELDEVYHNVE EV IGYYD V
Sbjct: 363 ERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVV 422
Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
P SSYMDVGPSTSYM+GHG G+ GEHNEYLY+EAPTDV D Q+YQQE KNQ+ Q
Sbjct: 423 GPLSSYMDVGPSTSYMYGHGRGY----GEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQ 482
BLAST of PI0006853 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 236.9 bits (603), Expect = 6.4e-59
Identity = 131/202 (64.85%), Postives = 142/202 (70.30%), Query Frame = 0
Query: 2 RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
RLYITR GA VG RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+R
Sbjct: 27 RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 86
Query: 62 GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
G VRVEE ELD+VYHNVE EVGIGYYD GV
Sbjct: 87 GCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGV 146
Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
PSSSY+DV PSTSYMHGH G+ GEHNEYLY+EAP DV D Q+YQQE +NQ+ Q
Sbjct: 147 GPSSSYVDVSPSTSYMHGHSRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQ 206
BLAST of PI0006853 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 120/188 (63.83%), Postives = 131/188 (69.68%), Query Frame = 0
Query: 16 RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVY 75
RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VY
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 76 HNVE-------------------------------EVGIGYYDLGVSPSSSYMDVGPSTS 135
HNVE EVGIGYYD GV PSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 136 YMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNR 173
YMHGH G+ GEHNEYLY+EAP DV D Q+YQQE +NQ+ Q RV SRRRQPTRNR
Sbjct: 147 YMHGHRRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 206
BLAST of PI0006853 vs. ExPASy TrEMBL
Match:
A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 119/174 (68.39%), Postives = 132/174 (75.86%), Query Frame = 0
Query: 7 RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRV 66
RS V LRSNN RLRDV DDPQQVLDICNNNERYME+IH +Y++PIVPPP++RGRVRV
Sbjct: 24 RSEMFVTLLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRV 83
Query: 67 EEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCG 126
EE ELDEVYH V+EV GY GV PSSSYMDV PSTSYMHGH G+
Sbjct: 84 EEAELDEVYHKVKEVHPMTQTQSQTGY---GVGPSSSYMDVDPSTSYMHGHERGY----E 143
Query: 127 EHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH 173
EHNEYLY+EAP DV D Q+YQQE +NQ+ Q RV SRRRQP +NRRRPGCGTH
Sbjct: 144 EHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH 190
BLAST of PI0006853 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 3.6e-46
Identity = 110/186 (59.14%), Postives = 127/186 (68.28%), Query Frame = 0
Query: 2 RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
RLYIT+ GA RSNN RLRDV DD QQVLDICNNN+R+ME+IH MY++PIVPP ++R
Sbjct: 26 RLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHR 85
Query: 62 GRVRVEEPELDEVYHNVEEV----------------------GIG---------YYDLGV 121
GRV+VEE ELDEVYHNVEE+ G+G YYD GV
Sbjct: 86 GRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGV 145
Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 157
PSSSYMDVGPSTSYMHGH H + GEHNEYLY+EAPT+V D Q+YQQE +NQ+ Q
Sbjct: 146 GPSSSYMDVGPSTSYMHGHRHDY----GEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQ 203
BLAST of PI0006853 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 242.3 bits (617), Expect = 3.1e-60
Identity = 132/202 (65.35%), Postives = 144/202 (71.29%), Query Frame = 0
Query: 2 RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
RLYITR GA+VGHLRSNN RLRDVV+DPQQVLDICNNNERYMEKIH +Y++PIVPPPV+R
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHR 362
Query: 62 GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
R RVEE ELDEVYHNVE EV IGYYD V
Sbjct: 363 ERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVV 422
Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
P SSYMDVGPSTSYM+GHG G+ GEHNEYLY+EAPTDV D Q+YQQE KNQ+ Q
Sbjct: 423 GPLSSYMDVGPSTSYMYGHGRGY----GEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQ 482
BLAST of PI0006853 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 131/202 (64.85%), Postives = 142/202 (70.30%), Query Frame = 0
Query: 2 RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
RLYITR GA VG RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+R
Sbjct: 27 RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 86
Query: 62 GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
G VRVEE ELD+VYHNVE EVGIGYYD GV
Sbjct: 87 GCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGV 146
Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
PSSSY+DV PSTSYMHGH G+ GEHNEYLY+EAP DV D Q+YQQE +NQ+ Q
Sbjct: 147 GPSSSYVDVSPSTSYMHGHSRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQ 206
BLAST of PI0006853 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 4.8e-53
Identity = 120/188 (63.83%), Postives = 131/188 (69.68%), Query Frame = 0
Query: 16 RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVY 75
RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VY
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 76 HNVE-------------------------------EVGIGYYDLGVSPSSSYMDVGPSTS 135
HNVE EVGIGYYD GV PSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 136 YMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNR 173
YMHGH G+ GEHNEYLY+EAP DV D Q+YQQE +NQ+ Q RV SRRRQPTRNR
Sbjct: 147 YMHGHRRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 206
BLAST of PI0006853 vs. NCBI nr
Match:
TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 4.8e-53
Identity = 119/174 (68.39%), Postives = 132/174 (75.86%), Query Frame = 0
Query: 7 RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRV 66
RS V LRSNN RLRDV DDPQQVLDICNNNERYME+IH +Y++PIVPPP++RGRVRV
Sbjct: 24 RSEMFVTLLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRV 83
Query: 67 EEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCG 126
EE ELDEVYH V+EV GY GV PSSSYMDV PSTSYMHGH G+
Sbjct: 84 EEAELDEVYHKVKEVHPMTQTQSQTGY---GVGPSSSYMDVDPSTSYMHGHERGY----E 143
Query: 127 EHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH 173
EHNEYLY+EAP DV D Q+YQQE +NQ+ Q RV SRRRQP +NRRRPGCGTH
Sbjct: 144 EHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH 190
BLAST of PI0006853 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 194.5 bits (493), Expect = 7.5e-46
Identity = 110/186 (59.14%), Postives = 127/186 (68.28%), Query Frame = 0
Query: 2 RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
RLYIT+ GA RSNN RLRDV DD QQVLDICNNN+R+ME+IH MY++PIVPP ++R
Sbjct: 26 RLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHR 85
Query: 62 GRVRVEEPELDEVYHNVEEV----------------------GIG---------YYDLGV 121
GRV+VEE ELDEVYHNVEE+ G+G YYD GV
Sbjct: 86 GRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGV 145
Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 157
PSSSYMDVGPSTSYMHGH H + GEHNEYLY+EAPT+V D Q+YQQE +NQ+ Q
Sbjct: 146 GPSSSYMDVGPSTSYMHGHRHDY----GEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQ 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DJV7 | 1.5e-60 | 65.35 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 6.4e-59 | 64.85 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 2.3e-53 | 63.83 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DFZ9 | 2.3e-53 | 68.39 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 3.6e-46 | 59.14 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK23842.1 | 3.1e-60 | 65.35 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0062642.1 | 1.3e-58 | 64.85 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 4.8e-53 | 63.83 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK22189.1 | 4.8e-53 | 68.39 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0025972.1 | 7.5e-46 | 59.14 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
