MS007770 (gene) Bitter gourd (TR) v1

Overview


Name	MS007770
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	late embryogenesis abundant protein 1-like isoform X1
Location	scaffold13: 1137841 .. 1138145 (-)
RNA-Seq Expression	MS007770
Synteny	MS007770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACATTCAGCAAAGTTTGAATGCAGGCCAAACCAAAGGCCAGACTCAGGTGGGAAACTCTCATCTTTCTTTTATATTCATATTCGTTTTCTCGTTAGGAGATCAACGTTATATTAATATCTTAACTAGTCGAGCTCGGTGCAGGCAAGGACAGAAGAATGGATGGAGGCCACAAAAAACACAACACATGAGTTGAATTCTTCAGATTCTAATTCTGCTCAGCTCTCTGCTCAACCTCACCAACAATCTAATTCTCCTCACCAACAGCAGCAAAAAGAAGCTGCTGGTTTTCTCCAACAG

mRNA sequence

ATGTCTAACATTCAGCAAAGTTTGAATGCAGGCCAAACCAAAGGCCAGACTCAGGCAAGGACAGAAGAATGGATGGAGGCCACAAAAAACACAACACATGAGTTGAATTCTTCAGATTCTAATTCTGCTCAGCTCTCTGCTCAACCTCACCAACAATCTAATTCTCCTCACCAACAGCAGCAAAAAGAAGCTGCTGGTTTTCTCCAACAG

Coding sequence (CDS)

ATGTCTAACATTCAGCAAAGTTTGAATGCAGGCCAAACCAAAGGCCAGACTCAGGCAAGGACAGAAGAATGGATGGAGGCCACAAAAAACACAACACATGAGTTGAATTCTTCAGATTCTAATTCTGCTCAGCTCTCTGCTCAACCTCACCAACAATCTAATTCTCCTCACCAACAGCAGCAAAAAGAAGCTGCTGGTTTTCTCCAACAG

Protein sequence

MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQQKEAAGFLQQ

Homology

[Close]

BLAST of MS007770 vs. NCBI nr
Match: XP_022138744.1 (late embryogenesis abundant protein 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQ 60
          MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQ
Sbjct: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQ 60

Query: 61 QKEAAGFLQQ 71
          QKEAAGFLQQ
Sbjct: 61 QKEAAGFLQQ 70

[Close]

BLAST of MS007770 vs. NCBI nr
Match: XP_022138743.1 (late embryogenesis abundant protein 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 70/75 (93.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQT-----QARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNS 60
          MSNIQQSLNAGQTKGQT     QARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNS
Sbjct: 1  MSNIQQSLNAGQTKGQTQSSSVQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNS 60

Query: 61 PHQQQQKEAAGFLQQ 71
          PHQQQQKEAAGFLQQ
Sbjct: 61 PHQQQQKEAAGFLQQ 75

[Close]

BLAST of MS007770 vs. NCBI nr
Match: KAA0031971.1 (late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK16791.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 8.1e-07
Identity = 44/71 (61.97%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60
          MSN+QQSLNAGQTKGQTQARTEEWMEATK   T E     SNSAQ     +   +S HQ+
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 QQKEAAGFLQQ 71
           Q E   FLQQ
Sbjct: 61 DQ-EPTSFLQQ 70

[Close]

BLAST of MS007770 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 8.1e-07
Identity = 44/71 (61.97%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1   MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60
           MSN+QQSLNAGQTKGQTQARTEEWMEATK   T E     SNSAQ     +   +S HQ+
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  QQKEAAGFLQQ 71
            Q E   FLQQ
Sbjct: 109 DQ-EPTSFLQQ 118

[Close]

BLAST of MS007770 vs. NCBI nr
Match: XP_011649123.1 (late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_005950 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60
          MSN+QQSLNAGQTKGQTQ RTEEWMEATK   T+E     SNSAQ     +   +S HQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 QQKEAAGFLQQ 71
           Q E    LQQ
Sbjct: 61 DQ-EPNSLLQQ 70

[Close]

BLAST of MS007770 vs. ExPASy TrEMBL
Match: A0A6J1CAZ0 (late embryogenesis abundant protein 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009834 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.9e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQ 60
          MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQ
Sbjct: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNSPHQQQ 60

Query: 61 QKEAAGFLQQ 71
          QKEAAGFLQQ
Sbjct: 61 QKEAAGFLQQ 70

[Close]

BLAST of MS007770 vs. ExPASy TrEMBL
Match: A0A6J1CDY7 (late embryogenesis abundant protein 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009834 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.1e-25
Identity = 70/75 (93.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQT-----QARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNS 60
          MSNIQQSLNAGQTKGQT     QARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNS
Sbjct: 1  MSNIQQSLNAGQTKGQTQSSSVQARTEEWMEATKNTTHELNSSDSNSAQLSAQPHQQSNS 60

Query: 61 PHQQQQKEAAGFLQQ 71
          PHQQQQKEAAGFLQQ
Sbjct: 61 PHQQQQKEAAGFLQQ 75

[Close]

BLAST of MS007770 vs. ExPASy TrEMBL
Match: A0A5A7SQZ2 (Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00540 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 44/71 (61.97%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60
          MSN+QQSLNAGQTKGQTQARTEEWMEATK   T E     SNSAQ     +   +S HQ+
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 QQKEAAGFLQQ 71
           Q E   FLQQ
Sbjct: 61 DQ-EPTSFLQQ 70

[Close]

BLAST of MS007770 vs. ExPASy TrEMBL
Match: A0A1S3CCL5 (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-07
Identity = 44/71 (61.97%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1   MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60
           MSN+QQSLNAGQTKGQTQARTEEWMEATK   T E     SNSAQ     +   +S HQ+
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  QQKEAAGFLQQ 71
            Q E   FLQQ
Sbjct: 109 DQ-EPTSFLQQ 118

[Close]

BLAST of MS007770 vs. ExPASy TrEMBL
Match: A0A0A0LI39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.7e-06
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60
          MSN+QQSLNAGQTKGQTQ RTEEWMEATK   T+E     SNSAQ     +   +S HQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 QQKEAAGFLQQ 71
           Q E    LQQ
Sbjct: 61 DQ-EPNSLLQQ 70

The following BLAST results are available for this feature:

BLAST of MS007770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138744.1	2.0e-26	100.00	late embryogenesis abundant protein 1-like isoform X2 [Momordica charantia]	[more]
XP_022138743.1	1.5e-24	93.33	late embryogenesis abundant protein 1-like isoform X1 [Momordica charantia]	[more]
KAA0031971.1	8.1e-07	61.97	late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008460707.2	8.1e-07	61.97	PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]	[more]
XP_011649123.1	2.0e-05	59.15	late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetic...	[more]

BLAST of MS007770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAZ0	9.9e-27	100.00	late embryogenesis abundant protein 1-like isoform X2 OS=Momordica charantia OX=...	[more]
A0A6J1CDY7	7.1e-25	93.33	late embryogenesis abundant protein 1-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A5A7SQZ2	3.9e-07	61.97	Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CCL5	3.9e-07	61.97	late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LI39	9.7e-06	59.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1	[more]

BLAST of MS007770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007770.1	MS007770.1	mRNA