MS004131 (gene) Bitter gourd (TR) v1

Overview


Name	MS004131
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	nuclear pore complex protein NUP1-like
Location	scaffold92: 248086 .. 248357 (+)
RNA-Seq Expression	MS004131
Synteny	MS004131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAGGTCCTTGATGAAGATATTTCGTCGCCTGCAGAGATGGCGAGGGCATACATGGGCAGAAGGCGGCCAAAAGTTGGTCCTTCAATGCGAGCTCAAGGACTTGGGGAAAATTCAGCTATTCCAAGTTGTACATCGTTCCCTTCAAAATCAATAGATATGTTGCTTGTGCCAACGTCTACCAGTCAGGTACACCTGAGAATGGTTTTGTAATCCCCAAATGTCAAAGCCGACTTTCAATGTACAGCATGGCTCAGTTGCTCTATTCCAGA

mRNA sequence

CTTCAGGTCCTTGATGAAGATATTTCGTCGCCTGCAGAGATGGCGAGGGCATACATGGGCAGAAGGCGGCCAAAAGTTGGTCCTTCAATGCGAGCTCAAGGACTTGGGGAAAATTCAGCTATTCCAAGTTGTACATCGTTCCCTTCAAAATCAATAGATATGTTGCTTGTGCCAACGTCTACCAGTCAGACACCTGAGAATGGTTTTGTAATCCCCAAATGTCAAAGCCGACTTTCAATGTACAGCATGGCTCAGTTGCTCTATTCCAGA

Coding sequence (CDS)

CTTCAGGTCCTTGATGAAGATATTTCGTCGCCTGCAGAGATGGCGAGGGCATACATGGGCAGAAGGCGGCCAAAAGTTGGTCCTTCAATGCGAGCTCAAGGACTTGGGGAAAATTCAGCTATTCCAAGTTGTACATCGTTCCCTTCAAAATCAATAGATATGTTGCTTGTGCCAACGTCTACCAGTCAGACACCTGAGAATGGTTTTGTAATCCCCAAATGTCAAAGCCGACTTTCAATGTACAGCATGGCTCAGTTGCTCTATTCCAGA

Protein sequence

LQVLDEDISSPAEMARAYMGRRRPKVGPSMRAQGLGENSAIPSCTSFPSKSIDMLLVPTSTSQTPENGFVIPKCQSRLSMYSMAQLLYSR

Homology

[Close]

BLAST of MS004131 vs. NCBI nr
Match: KAG6601239.1 (Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 2   QVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVP 61
           +VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP
Sbjct: 182 EVLDEDISSPAEIARAYMGSRQPKICPSMPSLRAQGLGENSARPTSTSFSSKSTDMLLVP 241

Query: 62  TSTSQ 64
           +ST+Q
Sbjct: 242 SSTNQ 246

[Close]

BLAST of MS004131 vs. NCBI nr
Match: KAG7032030.1 (Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+
Sbjct: 205 VLDEDISSPAEIARAYMGSRQPKICPSMPSLRAQGLGENSARPTSTSFSSKSTDMLLVPS 264

Query: 63  STSQ 64
           ST+Q
Sbjct: 265 STNQ 268

[Close]

BLAST of MS004131 vs. NCBI nr
Match: XP_022956529.1 (nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+
Sbjct: 199 VLDEDISSPAEIARAYMGSRQPKICPSMPSLRAQGLGENSARPTSTSFSSKSTDMLLVPS 258

Query: 63  STSQ 64
           ST+Q
Sbjct: 259 STNQ 262

[Close]

BLAST of MS004131 vs. NCBI nr
Match: XP_022956526.1 (nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata] >XP_022956527.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata] >XP_022956528.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+
Sbjct: 205 VLDEDISSPAEIARAYMGSRQPKICPSMPSLRAQGLGENSARPTSTSFSSKSTDMLLVPS 264

Query: 63  STSQ 64
           ST+Q
Sbjct: 265 STNQ 268

[Close]

BLAST of MS004131 vs. NCBI nr
Match: XP_022997509.1 (nuclear pore complex protein NUP1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+
Sbjct: 199 VLDEDISSPAEIARAYMVSRQPKLCPSMPSLRAQGLGENSAGPTSTSFSSKSIDMLLVPS 258

Query: 63  STSQ 64
           STSQ
Sbjct: 259 STSQ 262

[Close]

BLAST of MS004131 vs. ExPASy Swiss-Prot
Match: Q9CAF4 (Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.7e-13
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   LQVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLV 60
           L+ LDE I+SPA++A+AYMG R  +V PSM   R Q   E+S   + T FP KS  M LV
Sbjct: 220 LRTLDECIASPAQLAKAYMGSRPSEVTPSMLGLRGQAGREDSVFLNRTPFPQKSPTMSLV 279

Query: 61  PTSTSQTP-ENGFVIPKCQSRLSMYSMAQLLYSR 91
              + Q P ENGFV P+ + R ++YSMA+  YSR
Sbjct: 280 TKPSGQRPLENGFVTPRSRGRSAVYSMARTPYSR 313

[Close]

BLAST of MS004131 vs. ExPASy TrEMBL
Match: A0A6J1GWT8 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+
Sbjct: 205 VLDEDISSPAEIARAYMGSRQPKICPSMPSLRAQGLGENSARPTSTSFSSKSTDMLLVPS 264

Query: 63  STSQ 64
           ST+Q
Sbjct: 265 STNQ 268

[Close]

BLAST of MS004131 vs. ExPASy TrEMBL
Match: A0A6J1GZB0 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYMG R+PK+ PSM   RAQGLGENSA P+ TSF SKS DMLLVP+
Sbjct: 199 VLDEDISSPAEIARAYMGSRQPKICPSMPSLRAQGLGENSARPTSTSFSSKSTDMLLVPS 258

Query: 63  STSQ 64
           ST+Q
Sbjct: 259 STNQ 262

[Close]

BLAST of MS004131 vs. ExPASy TrEMBL
Match: A0A6J1K2T4 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+
Sbjct: 205 VLDEDISSPAEIARAYMVSRQPKLCPSMPSLRAQGLGENSAGPTSTSFSSKSIDMLLVPS 264

Query: 63  STSQ 64
           STSQ
Sbjct: 265 STSQ 268

[Close]

BLAST of MS004131 vs. ExPASy TrEMBL
Match: A0A6J1KDW6 (nuclear pore complex protein NUP1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+
Sbjct: 79  VLDEDISSPAEIARAYMVSRQPKLCPSMPSLRAQGLGENSAGPTSTSFSSKSIDMLLVPS 138

Query: 63  STSQ 64
           STSQ
Sbjct: 139 STSQ 142

[Close]

BLAST of MS004131 vs. ExPASy TrEMBL
Match: A0A6J1KBI9 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 3   VLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLVPT 62
           VLDEDISSPAE+ARAYM  R+PK+ PSM   RAQGLGENSA P+ TSF SKSIDMLLVP+
Sbjct: 199 VLDEDISSPAEIARAYMVSRQPKLCPSMPSLRAQGLGENSAGPTSTSFSSKSIDMLLVPS 258

Query: 63  STSQ 64
           STSQ
Sbjct: 259 STSQ 262

[Close]

BLAST of MS004131 vs. TAIR 10
Match: AT3G10650.1 (BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 5.5e-14
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   LQVLDEDISSPAEMARAYMGRRRPKVGPSM---RAQGLGENSAIPSCTSFPSKSIDMLLV 60
           L+ LDE I+SPA++A+AYMG R  +V PSM   R Q   E+S   + T FP KS  M LV
Sbjct: 220 LRTLDECIASPAQLAKAYMGSRPSEVTPSMLGLRGQAGREDSVFLNRTPFPQKSPTMSLV 279

Query: 61  PTSTSQTP-ENGFVIPKCQSRLSMYSMAQLLYSR 91
              + Q P ENGFV P+ + R ++YSMA+  YSR
Sbjct: 280 TKPSGQRPLENGFVTPRSRGRSAVYSMARTPYSR 313

The following BLAST results are available for this feature:

BLAST of MS004131 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601239.1	3.6e-15	75.38	Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7032030.1	4.7e-15	76.56	Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956529.1	4.7e-15	76.56	nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata]	[more]
XP_022956526.1	4.7e-15	76.56	nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata] >XP_02295...	[more]
XP_022997509.1	1.4e-14	78.13	nuclear pore complex protein NUP1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of MS004131 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAF4	7.7e-13	48.94	Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 S...	[more]

BLAST of MS004131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWT8	2.3e-15	76.56	nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1GZB0	2.3e-15	76.56	nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1K2T4	6.6e-15	78.13	nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1KDW6	6.6e-15	78.13	nuclear pore complex protein NUP1-like isoform X3 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1KBI9	6.6e-15	78.13	nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of MS004131 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10650.1	5.5e-14	48.94	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200....	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33416	FAMILY NOT NAMED	coord: 3..90
None	No IPR available	PANTHER	PTHR33416:SF20	NUCLEAR PORE COMPLEX PROTEIN NUP1	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004131.1	MS004131.1	mRNA