MS001842 (gene) Bitter gourd (TR) v1

Overview
NameMS001842
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein transport protein Sec61 subunit gamma-like
Locationscaffold30: 333278 .. 333603 (+)
RNA-Seq ExpressionMS001842
SyntenyMS001842
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCCATTGATTCAGTCATCGATCCTCTCAGAGGCTTCGCCAAGGATAGCGTCCGTCTCGTCAAGAGATGCCACAAGCCTGATCGCCAAGGCATGTTTTACCTTCACCAATTCATGTTGAATTAATATAAACTATAAAGATTAGGAACTACATTGTCTATTCTGTTCTGTTTTGCGATCTGATTAATTGCGGCGCCGGTTTTGGCACAGAATTCACCAAAGTGGCGCTCCGTACCGCAATTGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATTTTCATTCCGATTAACAATATCATCGTTGGATCTGGA

mRNA sequence

ATGGATGCCATTGATTCAGTCATCGATCCTCTCAGAGGCTTCGCCAAGGATAGCGTCCGTCTCGTCAAGAGATGCCACAAGCCTGATCGCCAAGGCATGTTTTACCTTCACCAATTCACCAAAGTGGCGCTCCGTACCGCAATTGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATTTTCATTCCGATTAACAATATCATCGTTGGATCTGGA

Coding sequence (CDS)

ATGGATGCCATTGATTCAGTCATCGATCCTCTCAGAGGCTTCGCCAAGGATAGCGTCCGTCTCGTCAAGAGATGCCACAAGCCTGATCGCCAAGGCATGTTTTACCTTCACCAATTCACCAAAGTGGCGCTCCGTACCGCAATTGGTTTCGTCGTGATGGGATTTGTCGGTTTTTTCGTCAAGTTGATTTTCATTCCGATTAACAATATCATCGTTGGATCTGGA

Protein sequence

MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Homology
BLAST of MS001842 vs. NCBI nr
Match: XP_022134627.1 (protein transport protein Sec61 subunit gamma-like [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQ      +FTKVALRTAIGFVVMGFVGFFV
Sbjct: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQ------EFTKVALRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGSG 76
          KLIFIPINNIIVGSG
Sbjct: 61 KLIFIPINNIIVGSG 69

BLAST of MS001842 vs. NCBI nr
Match: VAI56164.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQ--GMFYLHQFTKVALRTAIGFVVMGFVGF 60
          MDA+DSV+DPLR FAKDSVRLVKRCHKPDR+  G+    +FTKVA+RTAIGFVVMGFVGF
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKAYGLLACAEFTKVAIRTAIGFVVMGFVGF 60

Query: 61 FVKLIFIPINNIIVGSG 76
          FVKLIFIPINNIIVGSG
Sbjct: 61 FVKLIFIPINNIIVGSG 77

BLAST of MS001842 vs. NCBI nr
Match: RWR80044.1 (protein transport protein Sec61 subunit gamma-like protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDA+DSV+DPLRGFAKDS RLVKRCHKPDR+      +FTKVALRTAIGFVVMGFVGFFV
Sbjct: 1  MDALDSVVDPLRGFAKDSARLVKRCHKPDRK------EFTKVALRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGSG 76
          KLIFIPINNIIVGSG
Sbjct: 61 KLIFIPINNIIVGSG 69

BLAST of MS001842 vs. NCBI nr
Match: XP_008782072.1 (uncharacterized protein LOC103701688 [Phoenix dactylifera] >XP_008782074.1 uncharacterized protein LOC103701688 [Phoenix dactylifera] >XP_008782075.1 uncharacterized protein LOC103701688 [Phoenix dactylifera] >XP_026658273.1 uncharacterized protein LOC103701688 [Phoenix dactylifera] >XP_038984806.1 uncharacterized protein LOC103701688 [Phoenix dactylifera])

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1   MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
           MDA+DSV+DPLRGFAKDSVRLVKRCHKPDR+      +FTKVA RTAIGFVVMGFVGFFV
Sbjct: 101 MDALDSVVDPLRGFAKDSVRLVKRCHKPDRK------EFTKVAFRTAIGFVVMGFVGFFV 160

Query: 61  KLIFIPINNIIVGSG 76
           KLIFIPINNIIVGSG
Sbjct: 161 KLIFIPINNIIVGSG 169

BLAST of MS001842 vs. NCBI nr
Match: VAI92799.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLH---QFTKVALRTAIGFVVMGFVG 60
          MDA+DSV+DPLR FAKDSVRLVKRCHKPDR+G F L    +FTKVA RTAIGFVVMGFVG
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKG-FSLRACAEFTKVAARTAIGFVVMGFVG 60

Query: 61 FFVKLIFIPINNIIVGSG 76
          FFVKLIFIPINNIIVGSG
Sbjct: 61 FFVKLIFIPINNIIVGSG 77

BLAST of MS001842 vs. ExPASy Swiss-Prot
Match: P38385 (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-27
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDA+DSV+DPLR FAKDSVRLVKRCHKPDR+      +FTKVA RTAIGFVVMGFVGFFV
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK------EFTKVAARTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGSG 76
          KLIFIPINNIIVGSG
Sbjct: 61 KLIFIPINNIIVGSG 69

BLAST of MS001842 vs. ExPASy Swiss-Prot
Match: P0DI74 (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=SEC61G1 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-26
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDAIDSV+DPLR FAKDS+RLVKRCHKPDR+      +FTKVA+RTAIGFVVMGFVGFFV
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK------EFTKVAVRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KLIFIPINNIIVG+
Sbjct: 61 KLIFIPINNIIVGA 68

BLAST of MS001842 vs. ExPASy Swiss-Prot
Match: P0DI75 (Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 GN=SEC61G2 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-26
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDAIDSV+DPLR FAKDS+RLVKRCHKPDR+      +FTKVA+RTAIGFVVMGFVGFFV
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK------EFTKVAVRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KLIFIPINNIIVG+
Sbjct: 61 KLIFIPINNIIVGA 68

BLAST of MS001842 vs. ExPASy Swiss-Prot
Match: Q9SMP2 (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 GN=SEC61G3 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-25
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          M+AIDS IDPLR FAK SVRLV+RCHKPDR+      +FTKVA+RTAIGFVVMGFVGFFV
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRK------EFTKVAVRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KL+FIPINNIIVGS
Sbjct: 61 KLVFIPINNIIVGS 68

BLAST of MS001842 vs. ExPASy Swiss-Prot
Match: Q7Z1B8 (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=213494 GN=SEC61G PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-18
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MD +   I+P R FAKDS+RLVKRC KPDR+      +F K+A+ TAIGF +MGF+GFFV
Sbjct: 1  MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRK------EFQKIAVATAIGFCIMGFIGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KLI IPINNIIVGS
Sbjct: 61 KLIHIPINNIIVGS 68

BLAST of MS001842 vs. ExPASy TrEMBL
Match: A0A6J1C046 (protein transport protein Sec61 subunit gamma-like OS=Momordica charantia OX=3673 GN=LOC111006851 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-27
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQ      +FTKVALRTAIGFVVMGFVGFFV
Sbjct: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQ------EFTKVALRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGSG 76
          KLIFIPINNIIVGSG
Sbjct: 61 KLIFIPINNIIVGSG 69

BLAST of MS001842 vs. ExPASy TrEMBL
Match: A0A446W7V8 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_6Bv1G066660 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.9e-26
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQ--GMFYLHQFTKVALRTAIGFVVMGFVGF 60
          MDA+DSV+DPLR FAKDSVRLVKRCHKPDR+  G+    +FTKVA+RTAIGFVVMGFVGF
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKAYGLLACAEFTKVAIRTAIGFVVMGFVGF 60

Query: 61 FVKLIFIPINNIIVGSG 76
          FVKLIFIPINNIIVGSG
Sbjct: 61 FVKLIFIPINNIIVGSG 77

BLAST of MS001842 vs. ExPASy TrEMBL
Match: A0A3S5WGK6 (Protein transport protein Sec61 subunit gamma-like protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00865500 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDA+DSV+DPLRGFAKDS RLVKRCHKPDR+      +FTKVALRTAIGFVVMGFVGFFV
Sbjct: 1  MDALDSVVDPLRGFAKDSARLVKRCHKPDRK------EFTKVALRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGSG 76
          KLIFIPINNIIVGSG
Sbjct: 61 KLIFIPINNIIVGSG 69

BLAST of MS001842 vs. ExPASy TrEMBL
Match: A0A0A9J3J3 (Sec61 gamma subunit, putative OS=Arundo donax OX=35708 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDA+DSV+DPLRGFAKDSVRLVKRCHKPD +      +FTKVALRTAIGFVVMGFVGFFV
Sbjct: 1  MDAVDSVVDPLRGFAKDSVRLVKRCHKPDSK------EFTKVALRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGSG 76
          KLIFIPINNIIVGSG
Sbjct: 61 KLIFIPINNIIVGSG 69

BLAST of MS001842 vs. ExPASy TrEMBL
Match: A0A446YWH6 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G210650 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-25
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLH---QFTKVALRTAIGFVVMGFVG 60
          MDA+DSV+DPLR FAKDSVRLVKRCHKPDR+G F L    +FTKVA RTAIGFVVMGFVG
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKG-FSLRACAEFTKVAARTAIGFVVMGFVG 60

Query: 61 FFVKLIFIPINNIIVGSG 76
          FFVKLIFIPINNIIVGSG
Sbjct: 61 FFVKLIFIPINNIIVGSG 77

BLAST of MS001842 vs. TAIR 10
Match: AT4G24920.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDAIDSV+DPLR FAKDS+RLVKRCHKPDR+      +FTKVA+RTAIGFVVMGFVGFFV
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK------EFTKVAVRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KLIFIPINNIIVG+
Sbjct: 61 KLIFIPINNIIVGA 68

BLAST of MS001842 vs. TAIR 10
Match: AT5G50460.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          MDAIDSV+DPLR FAKDS+RLVKRCHKPDR+      +FTKVA+RTAIGFVVMGFVGFFV
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK------EFTKVAVRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KLIFIPINNIIVG+
Sbjct: 61 KLIFIPINNIIVGA 68

BLAST of MS001842 vs. TAIR 10
Match: AT3G48570.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 114.4 bits (285), Expect = 4.0e-26
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 1  MDAIDSVIDPLRGFAKDSVRLVKRCHKPDRQGMFYLHQFTKVALRTAIGFVVMGFVGFFV 60
          M+AIDS IDPLR FAK SVRLV+RCHKPDR+      +FTKVA+RTAIGFVVMGFVGFFV
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRK------EFTKVAVRTAIGFVVMGFVGFFV 60

Query: 61 KLIFIPINNIIVGS 75
          KL+FIPINNIIVGS
Sbjct: 61 KLVFIPINNIIVGS 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134627.11.3e-2690.67protein transport protein Sec61 subunit gamma-like [Momordica charantia][more]
VAI56164.11.4e-2583.12unnamed protein product [Triticum turgidum subsp. durum][more]
RWR80044.12.4e-2585.33protein transport protein Sec61 subunit gamma-like protein [Cinnamomum micranthu... [more]
XP_008782072.12.4e-2585.33uncharacterized protein LOC103701688 [Phoenix dactylifera] >XP_008782074.1 uncha... [more]
VAI92799.15.4e-2584.62unnamed protein product [Triticum turgidum subsp. durum][more]
Match NameE-valueIdentityDescription
P383852.7e-2784.00Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX... [more]
P0DI741.3e-2682.43Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 ... [more]
P0DI751.3e-2682.43Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9SMP25.6e-2579.73Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 ... [more]
Q7Z1B81.0e-1864.86Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=21349... [more]
Match NameE-valueIdentityDescription
A0A6J1C0466.2e-2790.67protein transport protein Sec61 subunit gamma-like OS=Momordica charantia OX=367... [more]
A0A446W7V86.9e-2683.12Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_6Bv1G... [more]
A0A3S5WGK61.2e-2585.33Protein transport protein Sec61 subunit gamma-like protein OS=Cinnamomum micrant... [more]
A0A0A9J3J31.5e-2585.33Sec61 gamma subunit, putative OS=Arundo donax OX=35708 PE=3 SV=1[more]
A0A446YWH62.6e-2584.62Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G... [more]
Match NameE-valueIdentityDescription
AT4G24920.19.5e-2882.43secE/sec61-gamma protein transport protein [more]
AT5G50460.19.5e-2882.43secE/sec61-gamma protein transport protein [more]
AT3G48570.14.0e-2679.73secE/sec61-gamma protein transport protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008158Protein translocase SEC61 complex, gamma subunitTIGRFAMTIGR00327TIGR00327coord: 8..72
e-value: 8.4E-11
score: 39.5
IPR023391Protein translocase SecE domain superfamilyGENE3D1.20.5.820Preprotein translocase SecE subunitcoord: 7..74
e-value: 2.1E-24
score: 86.9
IPR023391Protein translocase SecE domain superfamilySUPERFAMILY103456Preprotein translocase SecE subunitcoord: 5..71
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitPFAMPF00584SecEcoord: 13..71
e-value: 8.9E-8
score: 31.9
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitHAMAPMF_00422SecEcoord: 9..70
score: 11.158593
NoneNo IPR availablePANTHERPTHR12309SEC61 GAMMA SUBUNITcoord: 1..75
NoneNo IPR availablePANTHERPTHR12309:SF24PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001842.1MS001842.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006605 protein targeting
biological_process GO:0015031 protein transport
cellular_component GO:0016020 membrane
molecular_function GO:0008320 protein transmembrane transporter activity