MC06g0524 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0524
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	cytochrome c oxidase assembly factor 6
Location	MC06: 4328415 .. 4329460 (+)
RNA-Seq Expression	MC06g0524
Synteny	MC06g0524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGATACTGGAGTCTAACATGATTGGGCCCAAAACTGAAGCCTGAAGCTGGTGAGCGAAATTGGGAGGGGGACGGAGGAGAAACCCCAACAGCGAAAGAAATCAAGCAACAGCAGCAGCTTCGTCTCTGAAGGAGCTATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGTTCTTTCTCTCAATCACTCATTCTCTGCGGTTTCTGTTTGATTAAAATGCTAGAGTGTTAATGAATATGGCAATTTTATTCATCTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATGCCGTTCCCCGATGACTGGAGATTTTAATACAATGTTGGCACTTAGAATTTCTAGTCTCGTAGATTTTGATTTCTGGTGTTTGTGATTTGGTAGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGAACCAAACACAAATCCCCCGGGTGGAACAACTTTGGGTGGTCAGAATCTTTTATGACGATCGTTGTTTTTGTTCTTTTTTTACTTTGTATAGCGATGATTGTGCTTTAATTTCCTAATAATGCCAATCTTTTTAACAACTTACAAAAGCTTATTCCACCCCATTTTTTTATATTTTTAGGATATGGGAGTTCTATGGCCATTATGAACACAAGAACAGTTATGTAGTCACTTGACTAAACTTACATAGTATTACCCGTCTCTAAAACTATGTCGGTCATGGTCTTGGTAGTTGTTTCACACTATTTGGATGCTTTAATAGTTTGTAGAAATACAAATCCATTCGTCTTCCATAAAGAATTCTTGACTGCA

mRNA sequence

CTTTGATACTGGAGTCTAACATGATTGGGCCCAAAACTGAAGCCTGAAGCTGGTGAGCGAAATTGGGAGGGGGACGGAGGAGAAACCCCAACAGCGAAAGAAATCAAGCAACAGCAGCAGCTTCGTCTCTGAAGGAGCTATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGAACCAAACACAAATCCCCCGGGTGGAACAACTTTGGGTGGATATGGGAGTTCTATGGCCATTATGAACACAAGAACAGTTATGTAGTCACTTGACTAAACTTACATAGTATTACCCGTCTCTAAAACTATGTCGGTCATGGTCTTGGTAGTTGTTTCACACTATTTGGATGCTTTAATAGTTTGTAGAAATACAAATCCATTCGTCTTCCATAAAGAATTCTTGACTGCA

Coding sequence (CDS)

ATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGA

Protein sequence

MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS

Homology

[Close]

BLAST of MC06g0524 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 234 bits (598), Expect = 7.47e-78
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of MC06g0524 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 225 bits (574), Expect = 3.43e-74
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADASGGLDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPT+
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MC06g0524 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 3.86e-71
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MC06g0524 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 214 bits (545), Expect = 9.10e-70
Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of MC06g0524 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (542), Expect = 2.61e-69
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of MC06g0524 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 234 bits (598), Expect = 3.62e-78
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of MC06g0524 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.87e-71
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MC06g0524 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.87e-71
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MC06g0524 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 4.41e-70
Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of MC06g0524 vs. ExPASy TrEMBL
Match: A0A0A0LTX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.26e-69
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EAD+SGG DEVH+DVL+ SRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MC06g0524 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  AS   ++VH DVL  +R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPT 114
             R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+SLPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of MC06g0524 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  AS   ++VH DVL  +R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPT 114
             R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+SLPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of MC06g0524 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0524 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134674.1	7.47e-78	100.00	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_038878579.1	3.43e-74	96.49	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_008443871.1	3.86e-71	91.23	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_022973432.1	9.10e-70	90.35	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]
XP_022926034.1	2.61e-69	90.35	cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypoth...	[more]

BLAST of MC06g0524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	3.62e-78	100.00	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3B9T5	1.87e-71	91.23	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	1.87e-71	91.23	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1I7I2	4.41e-70	90.35	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]
A0A0A0LTX1	1.26e-69	88.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1	[more]

BLAST of MC06g0524 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	1.2e-42	68.14	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	1.2e-42	68.14	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 19..91 e-value: 4.3E-9 score: 38.2
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 23..82
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 22..92 e-value: 1.7E-18 score: 66.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..114
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 1..112
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0524.1	MC06g0524.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV