MC09g0920 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0920
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionF-box protein SKIP23-like
LocationMC09: 13182693 .. 13182803 (+)
RNA-Seq ExpressionMC09g0920
SyntenyMC09g0920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAGTGATCTGCCTTACGATCTCATACTAATCATCGGAGATCACTTAGACACATACACCGATTACGTTAGATTTCGAGCCGTTTGTGTTTCATATAGAAACAGCTTGCCC

mRNA sequence

TGGAGTGATCTGCCTTACGATCTCATACTAATCATCGGAGATCACTTAGACACATACACCGATTACGTTAGATTTCGAGCCGTTTGTGTTTCATATAGAAACAGCTTGCCC

Coding sequence (CDS)

TGGAGTGATCTGCCTTACGATCTCATACTAATCATCGGAGATCACTTAGACACATACACCGATTACGTTAGATTTCGAGCCGTTTGTGTTTCATATAGAAACAGCTTGCCC

Protein sequence

WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP
Homology
BLAST of MC09g0920 vs. NCBI nr
Match: XP_022156879.1 (putative F-box protein At4g17565 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 6.15e-08
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          W+DLP D++ IIG+HL+  +DY+RFRAVC S R++LP
Sbjct: 7  WNDLPKDILPIIGEHLENLSDYIRFRAVCASCRSTLP 43

BLAST of MC09g0920 vs. NCBI nr
Match: KAF6176285.1 (hypothetical protein GIB67_023576 [Kingdonia uniflora])

HSP 1 Score: 55.8 bits (133), Expect = 1.57e-07
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 1   WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSL 36
           WS+LP DL+ +IG +LD Y DYVRFRAVCV +R+ L
Sbjct: 183 WSELPLDLLELIGKNLDVYADYVRFRAVCVKWRSGL 218

BLAST of MC09g0920 vs. NCBI nr
Match: XP_042478809.1 (uncharacterized protein LOC122059841 [Macadamia integrifolia])

HSP 1 Score: 55.1 bits (131), Expect = 2.94e-07
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          WS+LP DL+L+IG+ L  Y DYVRFR+VC S+ ++LP
Sbjct: 15 WSELPVDLVLMIGERLSLYADYVRFRSVCGSWYSALP 51

BLAST of MC09g0920 vs. NCBI nr
Match: XP_022950355.1 (uncharacterized protein LOC111453467 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 7.46e-07
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          WSDLP +L L+IG  L+TY D +RFR+VC S+R SLP
Sbjct: 30 WSDLPPELCLVIGKRLETYIDVLRFRSVCKSWRASLP 66

BLAST of MC09g0920 vs. NCBI nr
Match: KAG7034052.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.9 bits (128), Expect = 7.47e-07
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          WSDLP +L L+IG  L+TY D +RFR+VC S+R SLP
Sbjct: 30 WSDLPPELCLVIGKRLETYIDVLRFRSVCKSWRASLP 66

BLAST of MC09g0920 vs. ExPASy TrEMBL
Match: A0A6J1DUW8 (putative F-box protein At4g17565 OS=Momordica charantia OX=3673 GN=LOC111023713 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.98e-08
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          W+DLP D++ IIG+HL+  +DY+RFRAVC S R++LP
Sbjct: 7  WNDLPKDILPIIGEHLENLSDYIRFRAVCASCRSTLP 43

BLAST of MC09g0920 vs. ExPASy TrEMBL
Match: A0A7J7P9Y8 (DUF295 domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_023576 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.59e-08
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 1   WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSL 36
           WS+LP DL+ +IG +LD Y DYVRFRAVCV +R+ L
Sbjct: 183 WSELPLDLLELIGKNLDVYADYVRFRAVCVKWRSGL 218

BLAST of MC09g0920 vs. ExPASy TrEMBL
Match: A0A6J1GFH5 (uncharacterized protein LOC111453467 OS=Cucurbita moschata OX=3662 GN=LOC111453467 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.61e-07
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          WSDLP +L L+IG  L+TY D +RFR+VC S+R SLP
Sbjct: 30 WSDLPPELCLVIGKRLETYIDVLRFRSVCKSWRASLP 66

BLAST of MC09g0920 vs. ExPASy TrEMBL
Match: A0A6J1II28 (putative F-box protein At1g65770 OS=Cucurbita maxima OX=3661 GN=LOC111477664 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.97e-07
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          WSDLP +L L+IG  L+TY D +RFR+VC S+R SLP
Sbjct: 8  WSDLPPELCLLIGKRLETYIDVLRFRSVCKSWRASLP 44

BLAST of MC09g0920 vs. ExPASy TrEMBL
Match: A0A6J1ID46 (F-box protein SKIP23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474793 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.31e-07
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 37
          W+ LP DL+ +I D+L+ Y+DY+RFR VC S+R+S+P
Sbjct: 4  WTQLPPDLLQVISDNLNVYSDYLRFRVVCQSWRSSVP 40

BLAST of MC09g0920 vs. TAIR 10
Match: AT2G16300.1 (F-box family protein )

HSP 1 Score: 40.4 bits (93), Expect = 3.6e-04
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 38
          WS LP DL+ +I  HL+T  + V FR+VC S+R+ +P
Sbjct: 4  WSLLPNDLLELIVGHLETSFEIVLFRSVCSSWRSVVP 40

BLAST of MC09g0920 vs. TAIR 10
Match: AT2G16290.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 40.0 bits (92), Expect = 4.7e-04
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 1  WSDLPYDLILIIGDHLDTYTDYVRFRAVCVSYRNSLP 38
          WS LP DL+ +I  HL+T  + V FR+VC S+R+ +P
Sbjct: 4  WSLLPNDLLELIVGHLETSFEIVLFRSVCRSWRSVVP 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022156879.16.15e-0859.46putative F-box protein At4g17565 [Momordica charantia][more]
KAF6176285.11.57e-0763.89hypothetical protein GIB67_023576 [Kingdonia uniflora][more]
XP_042478809.12.94e-0759.46uncharacterized protein LOC122059841 [Macadamia integrifolia][more]
XP_022950355.17.46e-0762.16uncharacterized protein LOC111453467 [Cucurbita moschata][more]
KAG7034052.17.47e-0762.16putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A6J1DUW82.98e-0859.46putative F-box protein At4g17565 OS=Momordica charantia OX=3673 GN=LOC111023713 ... [more]
A0A7J7P9Y87.59e-0863.89DUF295 domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_023576 ... [more]
A0A6J1GFH53.61e-0762.16uncharacterized protein LOC111453467 OS=Cucurbita moschata OX=3662 GN=LOC1114534... [more]
A0A6J1II284.97e-0762.16putative F-box protein At1g65770 OS=Cucurbita maxima OX=3661 GN=LOC111477664 PE=... [more]
A0A6J1ID469.31e-0754.05F-box protein SKIP23-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474793... [more]
Match NameE-valueIdentityDescription
AT2G16300.13.6e-0448.65F-box family protein [more]
AT2G16290.14.7e-0448.65F-box family protein with a domain of unknown function (DUF295) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0920.1MC09g0920.1mRNA