Tan0018310 (gene) Snake gourd v1

Overview


Name	Tan0018310
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG03: 21397454 .. 21398809 (+)
RNA-Seq Expression	Tan0018310
Synteny	Tan0018310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGGTTGTTTTGGTGCTGGAATTGCAGAAGTTGGGGGAGGTGAACTCAAAGTTTGATTATTTAGCAGCAAGGTGAGCAACTCCAATCCTATTCTGGTTTTCTGTTCATCTCGAGCTCCACAGGAAGAGGTAAGATTTGAAATTTTGTTTCATGAAAGTTAACTCATATTGGAACACAATTCGTGAAGGATGCTCGAGCAAATTCGGATCTTAAGCTACTGATTTGTGAAAAGGAAGACAGAACACAGAATTTACTGTCAAATCCGAGAAGTCTCTGATGTTTTGGTTGTACTGACCTGTAGAGTTGGAATCCGAAGCTCTATTAGGTATGGTTGGAAATCTTATTGAATTTCCTACAACTTTCGTGAAGAATTCGTGAATAGAAAATGACTGGAAAATGTTGTAAATAGCAGGTCAAGTTTCGGGTTGCAGCAGAACATCGAATCTGGAATAGCAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGAGTTTTAGAGGGTTCAAAAAGGAAGAGTTTGGTATAAAGTACATTATTTTTGGATAAGTAATGAAGAAGTTATGAGTATCTGAATACAGGGCATAAAATCTGTTAAATGCTGGAATTTTTGAAAGTGTGTTTTCTTGTAAGTTTAAGGTTAAAAACCATGAGCTCGAGGTTCTAAAACATGGTTTTGGTTTGTTTGACAGGCCAGGAACAAAAGGTCGAGTGTACGGGTCAAGACTTTAGTTCTAACACTGTGAGTGACAAAACGAACCTTGAAAATGGTTTATAGGCTTGTATTATGCTTATGAAATGCAAGGTTTTGCTAAAACGAAATGGTTTAGATGTTTATTGTTTTCTTGAACACTTGTTTATGAGCATTCATGATTTCTTAGAAATGTTTTAAAGTGTTCATGATGAGCCTAAAAGTCTTTATAAAGTTTATACATGAGCATATGTCCAATGGTTGCCAAAACTTATGAAAATGTGATGATTTCAAGCAAGCATGTACTAGCAAGTATGTTTTAAAGATTTCTAGTTTTATGAACAAGCTAAGTAAGCTTGAGTTTTATGAAAGAAAAAGATAAGCTGGCATGTTCAAATGTTTTCATGTGATCTTCTGAGATATTGAGCCCGAGGTTATGTAGTACCGTGTGCACACAGGTCTTATTCTTTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

mRNA sequence

ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

Coding sequence (CDS)

ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

Protein sequence

MKGKGFVGEALRKRKKLVPGKEDFEVFLNQSIGNLIFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS

Homology

[Close]

BLAST of Tan0018310 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 36 IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
          + + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 33 VSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]

BLAST of Tan0018310 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of Tan0018310 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of Tan0018310 vs. NCBI nr
Match: KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]

BLAST of Tan0018310 vs. NCBI nr
Match: TYK27262.1 (hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

[Close]

BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 36 IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
          + + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 33 VSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]

BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]

BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5D3DUS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00290 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

The following BLAST results are available for this feature:

BLAST of Tan0018310 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033241.1	5.4e-06	67.57	hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041...	[more]
KAA0037581.1	6.0e-05	74.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03091.1	6.0e-05	74.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0040296.1	1.3e-04	71.43	hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]	[more]
TYK27262.1	1.7e-04	71.43	hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0018310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUV2	2.6e-06	67.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BTP3	2.9e-05	74.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T7M6	2.9e-05	74.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7TDY3	6.4e-05	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DUS7	8.4e-05	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0018310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018310.1	Tan0018310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding