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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA mRNA sequence ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA Coding sequence (CDS) ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA Protein sequence MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGVGRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR
Homology
BLAST of Csor.00g002660 vs. NCBI nr
Match: KAG6575977.1 (hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 175 bits (443), Expect = 6.65e-55 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 Query: 1 MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV 60 MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV Sbjct: 1 MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV 60
Query: 61 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR Sbjct: 61 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6575977.1 | 6.65e-55 | 100.00 | hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 47..92 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 72..92 |
Relationships
The following mRNA feature(s) are a part of this gene:
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