Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA mRNA sequence ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA Coding sequence (CDS) ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA Protein sequence MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGVGRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR
Homology
BLAST of Csor.00g002660.m01 vs. NCBI nr
Match: KAG6575977.1 (hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 175 bits (443), Expect = 6.65e-55 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 Query: 1 MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV 60 MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV Sbjct: 1 MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV 60
Query: 61 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR Sbjct: 61 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6575977.1 | 6.65e-55 | 100.00 | hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 47..92 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 72..92 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g002660.m01.CDS01 | Csor.00g002660.m01.CDS01 | CDS |
The following single feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g002660.m01.single01 | Csor.00g002660.m01.single01 | single |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g002660.m01.stop_codon01 | Csor.00g002660.m01.stop_codon01 | stop_codon |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g002660.m01.start_codon01 | Csor.00g002660.m01.start_codon01 | start_codon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Csor.00g002660.m01 | Csor.00g002660.m01-protein | polypeptide |
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