Csor.00g243220 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g243220
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-type E3 ubiquitin ligase
Location	Csor_Chr16: 2322750 .. 2323019 (-)
RNA-Seq Expression	Csor.00g243220
Synteny	Csor.00g243220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTAACAAGAAATGAAGGAGAGTGGAATCTTGACCATCAATCAGAAGAAGCTGAAGCTGGGACGAGCTACCCGACATCGGATTCAACCAAAGACAATGGTACTGAATGTGCCTTACCGACAGCCAATGCTATGGACGGTGGAAACCAAGCGACAATGCCGATCATTCCTCAGAATTTTGAAGAGCAGATGATGCTCGCCATGGCTGTTTCTCTAGCAGAGGCTCGAGAAGTGTGTACTGGACCAGGTCATTCCTGGCAGCAGTGA

mRNA sequence

ATGATGTTAACAAGAAATGAAGGAGAGTGGAATCTTGACCATCAATCAGAAGAAGCTGAAGCTGGGACGAGCTACCCGACATCGGATTCAACCAAAGACAATGGTACTGAATGTGCCTTACCGACAGCCAATGCTATGGACGGTGGAAACCAAGCGACAATGCCGATCATTCCTCAGAATTTTGAAGAGCAGATGATGCTCGCCATGGCTGTTTCTCTAGCAGAGGCTCGAGAAGTGTGTACTGGACCAGGTCATTCCTGGCAGCAGTGA

Coding sequence (CDS)

ATGATGTTAACAAGAAATGAAGGAGAGTGGAATCTTGACCATCAATCAGAAGAAGCTGAAGCTGGGACGAGCTACCCGACATCGGATTCAACCAAAGACAATGGTACTGAATGTGCCTTACCGACAGCCAATGCTATGGACGGTGGAAACCAAGCGACAATGCCGATCATTCCTCAGAATTTTGAAGAGCAGATGATGCTCGCCATGGCTGTTTCTCTAGCAGAGGCTCGAGAAGTGTGTACTGGACCAGGTCATTCCTGGCAGCAGTGA

Protein sequence

MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQNFEEQMMLAMAVSLAEAREVCTGPGHSWQQ

Homology

[Close]

BLAST of Csor.00g243220 vs. ExPASy Swiss-Prot
Match: A4GWX9 (E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. indica OX=39946 GN=GW2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 3   LTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQNFE 62
           + R EGE + DH SE AEAGTSY  SD   D GT   LP A   +    A     P++ E
Sbjct: 343 VVREEGECSADHWSEGAEAGTSYAGSDIVADAGTMPQLPFA---ENFAMAPSHFRPESIE 402

Query: 63  EQMMLAMAVSLAEAREVCTGPGHSW 88
           EQMM +MA+SLA+        G +W
Sbjct: 403 EQMMFSMALSLADGHGRTHSQGLAW 424

[Close]

BLAST of Csor.00g243220 vs. ExPASy Swiss-Prot
Match: B9F4Q9 (E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. japonica OX=39947 GN=GW2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 3   LTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQNFE 62
           + R EGE + DH SE AEAGTSY  SD   D GT   LP A   +    A     P++ E
Sbjct: 343 VVREEGECSADHWSEGAEAGTSYAGSDIVADAGTMPQLPFA---ENFAMAPSHFRPESIE 402

Query: 63  EQMMLAMAVSLAEAREVCTGPGHSW 88
           EQMM +MA+SLA+        G +W
Sbjct: 403 EQMMFSMALSLADGHGRTHSQGLAW 424

[Close]

BLAST of Csor.00g243220 vs. NCBI nr
Match: KAG6577057.1 (E3 ubiquitin-protein ligase GW2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (464), Expect = 3.34e-58
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
          MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN
Sbjct: 1  MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60

Query: 61 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
          FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 61 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89

[Close]

BLAST of Csor.00g243220 vs. NCBI nr
Match: XP_022931339.1 (uncharacterized protein LOC111437560 isoform X2 [Cucurbita moschata])

HSP 1 Score: 183 bits (464), Expect = 7.23e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN
Sbjct: 353 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 412

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 413 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 441

[Close]

BLAST of Csor.00g243220 vs. NCBI nr
Match: XP_022931335.1 (uncharacterized protein LOC111437560 isoform X1 [Cucurbita moschata] >XP_022931336.1 uncharacterized protein LOC111437560 isoform X1 [Cucurbita moschata] >XP_022931337.1 uncharacterized protein LOC111437560 isoform X1 [Cucurbita moschata] >XP_022931338.1 uncharacterized protein LOC111437560 isoform X1 [Cucurbita moschata])

HSP 1 Score: 183 bits (464), Expect = 7.72e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN
Sbjct: 356 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 415

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 416 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 444

[Close]

BLAST of Csor.00g243220 vs. NCBI nr
Match: KAG7015068.1 (hypothetical protein SDJN02_22701, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (464), Expect = 1.11e-53
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN
Sbjct: 373 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 432

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 433 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 461

[Close]

BLAST of Csor.00g243220 vs. NCBI nr
Match: XP_023552167.1 (uncharacterized protein LOC111809924 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181 bits (460), Expect = 2.85e-53
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQ TMPIIPQN
Sbjct: 353 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQTTMPIIPQN 412

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 413 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 441

[Close]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL
Match: A0A6J1ETZ9 (uncharacterized protein LOC111437560 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437560 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 3.50e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN
Sbjct: 353 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 412

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 413 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 441

[Close]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL
Match: A0A6J1ETE3 (uncharacterized protein LOC111437560 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437560 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 3.74e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN
Sbjct: 356 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 415

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 416 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 444

[Close]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL
Match: A0A6J1JAB7 (uncharacterized protein LOC111482695 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482695 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 1.86e-49
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTE   PTANAMDGGNQATMPIIPQN
Sbjct: 353 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTE---PTANAMDGGNQATMPIIPQN 412

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 413 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 438

[Close]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL
Match: A0A6J1J207 (uncharacterized protein LOC111482695 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482695 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 1.98e-49
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTE   PTANAMDGGNQATMPIIPQN
Sbjct: 356 MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTE---PTANAMDGGNQATMPIIPQN 415

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREVCTGPGHSWQQ
Sbjct: 416 FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 441

[Close]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL
Match: A0A0A0L0A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075220 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 2.32e-49
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1   MMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTECALPTANAMDGGNQATMPIIPQN 60
           M+LTRN+GEWNLDHQSEEAEAGTSYPTSD  +DN TECALPT NAMDGGNQAT+PIIPQN
Sbjct: 126 MILTRNDGEWNLDHQSEEAEAGTSYPTSDLNEDNSTECALPTVNAMDGGNQATIPIIPQN 185

Query: 61  FEEQMMLAMAVSLAEAREVCTGPGHSWQQ 89
           FEEQMMLAMAVSLAEAREV TGPGHSWQ+
Sbjct: 186 FEEQMMLAMAVSLAEAREVSTGPGHSWQE 214

The following BLAST results are available for this feature:

BLAST of Csor.00g243220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GWX9	1.3e-07	43.53	E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. indica OX=39946 GN=GW2 PE...	[more]
B9F4Q9	1.3e-07	43.53	E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. japonica OX=39947 GN=GW2 ...	[more]

BLAST of Csor.00g243220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577057.1	3.34e-58	100.00	E3 ubiquitin-protein ligase GW2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022931339.1	7.23e-54	100.00	uncharacterized protein LOC111437560 isoform X2 [Cucurbita moschata]	[more]
XP_022931335.1	7.72e-54	100.00	uncharacterized protein LOC111437560 isoform X1 [Cucurbita moschata] >XP_0229313...	[more]
KAG7015068.1	1.11e-53	100.00	hypothetical protein SDJN02_22701, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023552167.1	2.85e-53	98.88	uncharacterized protein LOC111809924 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETZ9	3.50e-54	100.00	uncharacterized protein LOC111437560 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ETE3	3.74e-54	100.00	uncharacterized protein LOC111437560 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JAB7	1.86e-49	96.63	uncharacterized protein LOC111482695 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J207	1.98e-49	96.63	uncharacterized protein LOC111482695 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L0A5	2.32e-49	88.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075220 PE=4 SV=1	[more]

BLAST of Csor.00g243220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g243220.m01	Csor.00g243220.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0046620	regulation of organ growth
biological_process	GO:0080113	regulation of seed growth
molecular_function	GO:0061630	ubiquitin protein ligase activity