Csor.00g151100 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g151100
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	HMG-Y-related protein A-like
Location	Csor_Chr14: 4308951 .. 4310223 (-)
RNA-Seq Expression	Csor.00g151100
Synteny	Csor.00g151100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCGTTTTCCTCTCTATTTCCCGCAATTTCTGATATCCATCAACCAAAAATGATGATATGTTCTGTTTTTTCTCTCTTAATTTTTTGCTCCTCTTCGTCTCACTACCTCTAATTTGTTGAATCTATTATGGATTTGTGTGTTAATCTGTTCTTGAATTAGGGTTTCTTCTGATTTTGTGTCTTGTTTACTGAATTTTGTTGTTCTCTGGTGATTTGGTTAACAGGAGAAAATCCTTGTTTCCTTGTGTTTTCTTGCATTTTCTTCTCTAATCTGAGCGTTTGTTTTTCGGAAAAAACATGAAACGTTGATTATTCATCGGAGATTTTTCATTTCTTTAGCTCTTGTTAGAGATGACATGAATGTGCTTCTGGTTGACTGCAGTTTCTTCGATGATTTGTTTCTCATCTTATTTTGAATGATTCTTCAGTTCCATCATCCTTAATGAAATGGTTTTGAGGTTTGAATTTTGTTTGAGTCAGAAGAGATTTGAGATTAATGCCATTAACTGAATTTGCTGGAAACAAGTTCATTTGAAATGTGCTTCGATTTGAATTCTCTTGAAATGCTGAGAAAGAAGAATCCTGATTGATTTGGCTATCAAGTTTCAATTTAGATCTGCGAATCATTGAAGCTGATAAGAGTGGATCATGAAAATGAAAGGAAAAGGTTGAATTGAAACACCATTTTTGAACGAGGGGCGTTTTAAATGTTGCAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCGAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCACCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

mRNA sequence

ATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCGAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCACCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

Coding sequence (CDS)

ATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCGAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCACCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

Protein sequence

MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ

Homology

[Close]

BLAST of Csor.00g151100 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.1e-57
Identity = 125/183 (68.31%), Postives = 141/183 (77.05%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGEL F +NNYMK DP APP+RGRGRPPK K PLPPG+V+SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPR-PATPPAPPVPSGRPRGRPPKVKGPLTEV 180
           PPK PK       K + G+G+PRGRP+K PR PA      V SGRPRGRPPKVK  LTEV
Sbjct: 121 PPKSPK------AKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEV 175

Query: 181 SVQ 183
           SV+
Sbjct: 181 SVE 175

[Close]

BLAST of Csor.00g151100 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-45
Identity = 106/159 (66.67%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSSGTGKPRG 144
           P+RGRGRPPK KVPLPPG+V+SPP+PRGRPPKDPNAPPK PK       K +  TG+PRG
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK------AKATPATGRPRG 120

Query: 145 RPRKFPR-PATPPAPPVPSGRPRGRPPKVKGPLTEVSVQ 183
           RP+K  R PA P    V +GRPRGRPPKVK  LTEVSV+
Sbjct: 121 RPKKVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of Csor.00g151100 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKLKV----PLPPGSVLSPPKPRGRPPKDPNAPPKPPK 130
             KNNYMK DP APP+RGRGRPPK K          +V++       PP+    PPKP  
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKD 141

Query: 131 PPKPVQMKVSSGTGKPRGRPRKFPRPAT-------PPAPPVPSGRPRGRPPKVK 174
           P +P Q KV +G+G+PRGRP K PR  +       P A      R RGRPPKVK
Sbjct: 142 PSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Csor.00g151100 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.8e-32
Identity = 93/186 (50.00%), Postives = 108/186 (58.06%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPN 120
             MK SGELVF KNNY +   P APP+RGRGRPPK + P  P      P   GR      
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRG 120

Query: 121 APPKPPKPPKPVQMKVSSGTGKPRGRPRK--------FPRPATPPAP----PVPSGRPRG 174
            PPK   P +    + ++G  KPRGRP K         P P+  PAP      P  R RG
Sbjct: 121 RPPKAKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

[Close]

BLAST of Csor.00g151100 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356 bits (913), Expect = 1.21e-123
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 183

[Close]

BLAST of Csor.00g151100 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 314 bits (805), Expect = 3.19e-107
Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKP   VQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKP---VQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of Csor.00g151100 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 312 bits (800), Expect = 1.84e-106
Identity = 166/183 (90.71%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP SVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKP   VQMKVSSGTGK RGRPRKFP   T P+PP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKP---VQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of Csor.00g151100 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 311 bits (797), Expect = 5.28e-106
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKP   VQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKP---VQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of Csor.00g151100 vs. NCBI nr
Match: XP_031739266.1 (HMG-Y-related protein A isoform X1 [Cucumis sativus])

HSP 1 Score: 301 bits (770), Expect = 1.20e-101
Identity = 164/199 (82.41%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIEST 60
           MA +EVNKPPSLPPYPE                MIFRAIEALNSDNGSNKSTISKYIEST
Sbjct: 1   MATQEVNKPPSLPPYPEISLLQRDNKPYKFIIKMIFRAIEALNSDNGSNKSTISKYIEST 60

Query: 61  YGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSV 120
           YGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV
Sbjct: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSV 120

Query: 121 LSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGR 180
           +S PKPRGRPPKDPNAPPKPPKP   VQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGR
Sbjct: 121 ISSPKPRGRPPKDPNAPPKPPKP---VQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGR 180

Query: 181 PRGRPPKVKGPLTEVSVQQ 183
           PRGRPPKVK  LTEVSVQQ
Sbjct: 181 PRGRPPKVKATLTEVSVQQ 196

[Close]

BLAST of Csor.00g151100 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 356 bits (913), Expect = 5.87e-124
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 183

[Close]

BLAST of Csor.00g151100 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 356 bits (913), Expect = 5.87e-124
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 183

[Close]

BLAST of Csor.00g151100 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 314 bits (805), Expect = 1.54e-107
Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKP   VQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKP---VQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of Csor.00g151100 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 314 bits (805), Expect = 1.54e-107
Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKP   VQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKP---VQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of Csor.00g151100 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 311 bits (797), Expect = 2.56e-106
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
           PPKPPKP   VQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 PPKPPKP---VQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 183
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of Csor.00g151100 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33
Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKLKV----PLPPGSVLSPPKPRGRPPKDPNAPPKPPK 130
             KNNYMK DP APP+RGRGRPPK K          +V++       PP+    PPKP  
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKD 141

Query: 131 PPKPVQMKVSSGTGKPRGRPRKFPRPAT-------PPAPPVPSGRPRGRPPKVK 174
           P +P Q KV +G+G+PRGRP K PR  +       P A      R RGRPPKVK
Sbjct: 142 PSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Csor.00g151100 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 76/211 (36.02%), Postives = 94/211 (44.55%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           S PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 71  FWKNNY-MKRDPTAPP------------------------------------RRGRGRPP 130
             K +Y +   P  PP                                    +RGRGRPP
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPP 193

Query: 131 KLK------VPLPPGSVL--SPPKPRGRPPKDPNAPPK-PPKPPKPVQMKVSSGTGKPRG 171
           K K       PL  G +       P  RP +    PP+ P +P +PV+        +P G
Sbjct: 194 KAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK--------RPPG 253

[Close]

BLAST of Csor.00g151100 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-11
Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPP--------RRGRGRP-PKLKV-------PLPPGSVLSPPK-PRGRPP 132
           K +Y     + PP           +G   P+ ++       P+  GS   P K  RGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KDPNAPPKPPKPPKPVQMKVSSGTGKPRGRP----RKFPRPATPPAPPVPS-----GRPR 182
           K     PKP   P+P+Q    +   +  G+P    ++   P   P P   S     GRPR
Sbjct: 186 K-----PKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPR 245

The following BLAST results are available for this feature:

BLAST of Csor.00g151100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	6.1e-57	68.31	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	4.1e-45	66.67	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	2.3e-32	51.15	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	6.8e-32	50.00	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of Csor.00g151100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935331.1	1.21e-123	100.00	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_008456999.1	3.19e-107	90.16	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_038878302.1	1.84e-106	90.71	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_004145857.1	5.28e-106	89.62	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_031739266.1	1.20e-101	82.41	HMG-Y-related protein A isoform X1 [Cucumis sativus]	[more]

BLAST of Csor.00g151100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6G8	5.87e-124	100.00	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	5.87e-124	100.00	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]
A0A5D3DJY3	1.54e-107	90.16	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	1.54e-107	90.16	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A0A0LCH9	2.56e-106	89.62	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]

BLAST of Csor.00g151100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	1.7e-33	51.15	high mobility group A	[more]
AT1G48620.1	1.4e-11	36.02	high mobility group A5	[more]
AT3G18035.1	8.8e-11	35.03	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 161..171 score: 68.56 coord: 106..117 score: 61.46 coord: 86..96 score: 68.18
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 163..175 e-value: 3.5 score: 12.2 coord: 86..98 e-value: 13.0 score: 8.9 coord: 140..152 e-value: 10.0 score: 9.6 coord: 108..120 e-value: 0.79 score: 15.8
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 152..171 score: 42.86 coord: 138..149 score: 33.33 coord: 106..118 score: 43.96
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.5E-22 score: 90.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 1.0E-9 score: 38.6
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.777845
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 7..85 e-value: 7.3E-14 score: 53.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..131
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..178
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..178
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g151100.m01	Csor.00g151100.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding