Csor.00g076640.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g076640.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 10958571 .. 10961266 (+)
Sequence length	267
RNA-Seq Expression	Csor.00g076640.m01
Synteny	Csor.00g076640.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGGTTATGAAAACATATGGTTCTGAAGGCAATGAAGCTAGAAATTTGGTGGTGGGCTTCAGGGAGATGGGGGTGTGAGCGTGTGTGGCTCTTTCCCAGCCTATCGATTAACGCTCGAGGAGATAAGGCTCTCGTATTTTGGATTTCCATCCACAGTTTCTTCCGTTCTCTTCCTTTGGTTTAGACTATAAAAATTTGCTTTTACCCTCTTGTTTTGTGTTCTTATTGGGACGTAATAATTTATAGGTTAAAGAGTTTCAAATTAGAGATTTAATTTATGACGTAAGAATCTTCGTTCCGGTAATGGAACGGGGAATTTTAACTAAATGGGACGGGGACTATCGCCGTTAAATGTGACTATCGCCGTTAATTTTTGTCCATGAGATTAGACAAATATCTTGTTTGATTCTCGGGATAAACGACTTATTCTCAATCTAACTCGGTTAGCTCCCTTTTGCTTCTGATGGTGGGTTAACTTTAACCGTCCAAGTTCACTGCTACCTTTGCTTTTGCTAGTAGTATTGTCTGGTTTGGGTAAATGACTTATTCTTAGTCAACTAGGTTAATTTCCTCTGCTTTTGATGGTGGGCCAACGGTAACAACCCAAACCTACTGCTGCCAGATATTGTTCGCTTTAGGTAAACAATTTATTCTTATTCAACTCATTAACTTCCTCTGCTTTCTATTGTGGGCCAATTGCCACTGCTAGTAGATATTGTTAACTTTAGTCGGTTACCTTACGGTTTTAAACACGTCTGATATCGTCGTCAACCTTACGGTTTTAAACGCGTCTAGTATGAAGAAGTTTTCACACTCTTATAAATAAAAGTCAAGTAATGTCTCTCCAACTAGCTATACTCTCGTCACAGAGTCATTCAAGGATAGATCCGATGGTTTTGGAAAGCTTATTTAATCACTTGAATTTTTTTAATTTTATATATATATATATATAAAAGTAAGTTAATTTAATATAATAATAAACCTTTTCAAGCATAGAGGTTATTTATTTATTTATTTTTGTCGAGAGTATATGTCGGCCATGCTCAGCTTTAGCTATGCTTACCACGTTTTTTTAATCTATTTTTTTTTAATTTTTTTTTGTGCATGACGTTTTTTCCGATTCAATATATTGTTTTTCCGATTCAATATATTGTTTATAAAGTTTCAGTTTAGTTGTTTGTATTTTATTTTTTATTTAATTATTAGTAATTATTGAAGGACTATTTTTGAATTTTTAAAATAAAATTTAAAAATAATAATCTAATTTTAAAATTTAAAAAATATATAAAAGTAATAATGAACCAATTAATGAAATTTATTTAATAAAAAAAGGGATATTAATTAATGTGGCGGGTTTATAGGTGGGAAATTTTCCTGCCCGATTCAACGACGGGCGGGGCAGGTAAAGGCGTCGGTTGCACGTGTGAGAGTACAGTTACACACGTGTGAGTCTACTTCCTTCTGATTGGCTGAAACAGTGACCCATTCTCAAATCCCAAGCATTTTTTCTTCAACATTCCACTCTCACTCTTTCACTCATTCTCTCTTTCTCTCTCTCATCACTCAGAAACGGACAGGAATCTTTCAACTTTCACAAGCTCACGGCGATTTTTGGTTTTTCTTAACGTCACATCCACCGATTCATCCACATTTTCCGTTTCCTGGATCTTGGATCGGTTTGCAGGTTCGAATGTCTGTTCTTATTGCCATTTTTAGTTCTAATTTTACCCAAATTTGTTGTGCTACTTGGATTCGTATTGTGTATCTGCAATCATTCGTTGATTTTCAATTATCTGGCTGTTCTTTTTGTTTTTTTTTTCTTTTACGAGTTATTAAATGTGTAATTTATGTGTTTTTAATGTGATTCGTGAGATCATTTCACTTCGATTTGACTATAATAGATGCTCGATTTGAAATTAAAATTAATTTGAGCTGAAATTGTTGCTACTTCTGTTGCTTCAAGTTCAAGTAGTTTCTGTTGAAAATTATAGTATTTCTACTGTTTTTATGCTGCTCGGCTCTTTGGAATATAACTACATGAATTGCATGAACTGGGGAATATTGATCGAGTGAAGTTCATTCCTGTGAAAAATCGAGTAATATGCTATAGCTTTTGCTTTAATGGTGACGGTTGTTGAATTTATCATGGACTTTTCTTTTATAAATATATATAGTTATCTCTTTACTTTTGTGGCATATCCACAGAGAACGGTAGAATGAAAAAGCTTCTGGCCCACCGGATCATTTGTGTGTTAAAATTTTGCTGAACTTGGAGGTTTATCGTTCTAAATCCCATCGGTTTAGTTTATTATGCCGCCGTATTTTTACGACACCTCAGCAACATAATGTCAGATTAGATCATGGGCCAGCATTTTGTCAAATGTGTTAGGAAAATAATATGTACCGATTACTCTTTCTAGTCTGAATGTTCTTGGGGTCATATGATATATAGTATAGTATGCCATGGTTTGTGGGTTGGTGTGAAGTGGAGTAATTTAAAACTGCTAGCAAAATCTGTGACGTTGAGAATTTTGTACAGAGTTATTGCATTTTTGTACCGTCATCTGTTATGAGATTAGCATCTTCCTGCCAAGAGTAAGCAGCTTCTTCTATGCCAGGTGTTGTTTTCCTTGCGGCAGCTCTTTGTTACCAGATTACATTATGTTAAAGAAAACCATTCCAGCCTTTGA

mRNA sequence

ATGAGGATGGTTATGAAAACATATGGTTCTGAAGGCAATGAAGCTAGAAATTTGGTGGTGGGCTTCAGGGAGATGGGGAAACGGACAGGAATCTTTCAACTTTCACAAGCTCACGGCGATTTTTGGTTTTTCTTAACGTCACATCCACCGATTCATCCACATTTTCCGTTTCCTGGATCTTGGATCGGTTTGCAGGTGTTGTTTTCCTTGCGGCAGCTCTTTGTTACCAGATTACATTATGTTAAAGAAAACCATTCCAGCCTTTGA

Coding sequence (CDS)

ATGAGGATGGTTATGAAAACATATGGTTCTGAAGGCAATGAAGCTAGAAATTTGGTGGTGGGCTTCAGGGAGATGGGGAAACGGACAGGAATCTTTCAACTTTCACAAGCTCACGGCGATTTTTGGTTTTTCTTAACGTCACATCCACCGATTCATCCACATTTTCCGTTTCCTGGATCTTGGATCGGTTTGCAGGTGTTGTTTTCCTTGCGGCAGCTCTTTGTTACCAGATTACATTATGTTAAAGAAAACCATTCCAGCCTTTGA

Protein sequence

MRMVMKTYGSEGNEARNLVVGFREMGKRTGIFQLSQAHGDFWFFLTSHPPIHPHFPFPGSWIGLQVLFSLRQLFVTRLHYVKENHSSL

Homology

[Close]

BLAST of Csor.00g076640.m01 vs. NCBI nr
Match: KAG6608009.1 (hypothetical protein SDJN03_01351, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (479), Expect = 1.60e-60
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MRMVMKTYGSEGNEARNLVVGFREMGKRTGIFQLSQAHGDFWFFLTSHPPIHPHFPFPGS 60
          MRMVMKTYGSEGNEARNLVVGFREMGKRTGIFQLSQAHGDFWFFLTSHPPIHPHFPFPGS
Sbjct: 1  MRMVMKTYGSEGNEARNLVVGFREMGKRTGIFQLSQAHGDFWFFLTSHPPIHPHFPFPGS 60

Query: 61 WIGLQVLFSLRQLFVTRLHYVKENHSSL 88
          WIGLQVLFSLRQLFVTRLHYVKENHSSL
Sbjct: 61 WIGLQVLFSLRQLFVTRLHYVKENHSSL 88

The following BLAST results are available for this feature:

BLAST of Csor.00g076640.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g076640.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608009.1	1.60e-60	100.00	hypothetical protein SDJN03_01351, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g076640.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g076640.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g076640	Csor.00g076640	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.CDS03	Csor.00g076640.m01.CDS03	CDS
Csor.00g076640.m01.CDS02	Csor.00g076640.m01.CDS02	CDS
Csor.00g076640.m01.CDS01	Csor.00g076640.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.initial01	Csor.00g076640.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.start_codon01	Csor.00g076640.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.intron02	Csor.00g076640.m01.intron02	intron
Csor.00g076640.m01.intron01	Csor.00g076640.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.internal01	Csor.00g076640.m01.internal01	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.terminal01	Csor.00g076640.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01.stop_codon01	Csor.00g076640.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g076640.m01	Csor.00g076640.m01-protein	polypeptide