Carg00272 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00272
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 6312795 .. 6313517 (-)
RNA-Seq ExpressionCarg00272
SyntenyCarg00272
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCGAGAGAAGAAGAACAATAACAAGAAGCAAAAGCACCACCACCAACCCGGCGGCGCCACCGCCAATCCACCATTTTCAGATTTCTCCTTCAAGCCTTCCGCTGCCGTCAAAGGCCTCCGATTCGGCGGCCAATTCGTCGTTAAATCCTTCACAATCCGGCGAGCTTGGACTATAGAATTTCTCCAACTCCTCTCTCTACCACCGCACCACGACAGCAACCGTCTTCCATTTAATTCCACCGCCGCGTTCCTCCCGACGAATTTCACTATTTTAGCACACCACGCTTGGCATACTCTGACTCTTGGCCTCGGCACCAAGAAATCGAAGGTGATTCTGTTCGTTTTCGCAACGGAGGCTCTAAAAGTCGCCGCTGGCCGTCTTTGGCCGGTGGAAATCCCACTTGGCGAGGCGAATCGGCGGCTGATTAGGGGGCTCAGCGGCTGCGAGATGGCTAGATTTAAATATAGAAAAGGATGCCTAACTTTTTATATCTATGCGGTCCGCGAAAAAGGCTGCTTCGGATTCTCCGCCGCCGATGATTTAAACACAATTTTGCAGGCGGTTACTGCGCTCAACGATTTCTTGGACCACACCGCTATGCTTGCCTTGCCGAATCAGAGAAACATTAGTTATGACGGCGGCGGCAGCGGCGGCGGCAGCAGCAGCAACAGCAACAACAACTTTACAACGCCGCCGGTGGCCGTTGTTCATTGA

mRNA sequence

ATGGAAGATCGAGAGAAGAAGAACAATAACAAGAAGCAAAAGCACCACCACCAACCCGGCGGCGCCACCGCCAATCCACCATTTTCAGATTTCTCCTTCAAGCCTTCCGCTGCCGTCAAAGGCCTCCGATTCGGCGGCCAATTCGTCGTTAAATCCTTCACAATCCGGCGAGCTTGGACTATAGAATTTCTCCAACTCCTCTCTCTACCACCGCACCACGACAGCAACCGTCTTCCATTTAATTCCACCGCCGCGTTCCTCCCGACGAATTTCACTATTTTAGCACACCACGCTTGGCATACTCTGACTCTTGGCCTCGGCACCAAGAAATCGAAGGTGATTCTGTTCGTTTTCGCAACGGAGGCTCTAAAAGTCGCCGCTGGCCGTCTTTGGCCGGTGGAAATCCCACTTGGCGAGGCGAATCGGCGGCTGATTAGGGGGCTCAGCGGCTGCGAGATGGCTAGATTTAAATATAGAAAAGGATGCCTAACTTTTTATATCTATGCGGTCCGCGAAAAAGGCTGCTTCGGATTCTCCGCCGCCGATGATTTAAACACAATTTTGCAGGCGGTTACTGCGCTCAACGATTTCTTGGACCACACCGCTATGCTTGCCTTGCCGAATCAGAGAAACATTAGTTATGACGGCGGCGGCAGCGGCGGCGGCAGCAGCAGCAACAGCAACAACAACTTTACAACGCCGCCGGTGGCCGTTGTTCATTGA

Coding sequence (CDS)

ATGGAAGATCGAGAGAAGAAGAACAATAACAAGAAGCAAAAGCACCACCACCAACCCGGCGGCGCCACCGCCAATCCACCATTTTCAGATTTCTCCTTCAAGCCTTCCGCTGCCGTCAAAGGCCTCCGATTCGGCGGCCAATTCGTCGTTAAATCCTTCACAATCCGGCGAGCTTGGACTATAGAATTTCTCCAACTCCTCTCTCTACCACCGCACCACGACAGCAACCGTCTTCCATTTAATTCCACCGCCGCGTTCCTCCCGACGAATTTCACTATTTTAGCACACCACGCTTGGCATACTCTGACTCTTGGCCTCGGCACCAAGAAATCGAAGGTGATTCTGTTCGTTTTCGCAACGGAGGCTCTAAAAGTCGCCGCTGGCCGTCTTTGGCCGGTGGAAATCCCACTTGGCGAGGCGAATCGGCGGCTGATTAGGGGGCTCAGCGGCTGCGAGATGGCTAGATTTAAATATAGAAAAGGATGCCTAACTTTTTATATCTATGCGGTCCGCGAAAAAGGCTGCTTCGGATTCTCCGCCGCCGATGATTTAAACACAATTTTGCAGGCGGTTACTGCGCTCAACGATTTCTTGGACCACACCGCTATGCTTGCCTTGCCGAATCAGAGAAACATTAGTTATGACGGCGGCGGCAGCGGCGGCGGCAGCAGCAGCAACAGCAACAACAACTTTACAACGCCGCCGGTGGCCGTTGTTCATTGA

Protein sequence

MEDREKKNNNKKQKHHHQPGGATANPPFSDFSFKPSAAVKGLRFGGQFVVKSFTIRRAWTIEFLQLLSLPPHHDSNRLPFNSTAAFLPTNFTILAHHAWHTLTLGLGTKKSKVILFVFATEALKVAAGRLWPVEIPLGEANRRLIRGLSGCEMARFKYRKGCLTFYIYAVREKGCFGFSAADDLNTILQAVTALNDFLDHTAMLALPNQRNISYDGGGSGGGSSSNSNNNFTTPPVAVVH
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7031615.11.7e-133100.00hypothetical protein SDJN02_05656, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601001.18.6e-13399.58hypothetical protein SDJN03_06234, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022957098.13.6e-13198.35uncharacterized protein LOC111458581 [Cucurbita moschata][more]
XP_022984700.14.4e-12997.08uncharacterized protein LOC111482900 [Cucurbita maxima][more]
XP_023549491.11.7e-12897.50uncharacterized protein LOC111807888 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GZ931.7e-13198.35uncharacterized protein LOC111458581 OS=Cucurbita moschata OX=3662 GN=LOC1114585... [more]
A0A6J1J9B52.1e-12997.08uncharacterized protein LOC111482900 OS=Cucurbita maxima OX=3661 GN=LOC111482900... [more]
A0A1S3CF884.1e-10479.92uncharacterized protein LOC103500208 OS=Cucumis melo OX=3656 GN=LOC103500208 PE=... [more]
A0A0A0KQ891.9e-10178.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181490 PE=4 SV=1[more]
A0A6J1FQS43.6e-10076.49uncharacterized protein LOC111447604 OS=Cucurbita moschata OX=3662 GN=LOC1114476... [more]
Match NameE-valueIdentityDescription
AT3G55420.12.9e-7062.39unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR36375OS05G0459300 PROTEINcoord: 1..215
NoneNo IPR availablePANTHERPTHR36375:SF1OS05G0459300 PROTEINcoord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00272-RACarg00272-RAmRNA