Carg00149 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00149
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionheat stress transcription factor A-8-like
LocationCarg_Chr04: 5615581 .. 5618201 (+)
RNA-Seq ExpressionCarg00149
SyntenyCarg00149
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTTGTCGTAATCGATTTAGCGATGGTGAAATCCGCGGCGGAGCGGCAGGGATCGACGGTGGCGCCGTTCGTGAAGAAGTTGTATGAGATGGTTGACGACGACGCCACCAATTCGATTATCGCGTGGAGCCCTACGGAGGATAGCTTTACGATTGTGGACATCACCCAATTCTGTGTCCACATGCTTCCCAAGTACTTTAAGCACAGCAATTTCTCTAGCTTCATGCGCCAGCTTAATATCTATGTTAGTTTCTTCTTTCTTCTATTTCTCTATGTCTTCCATCATTTTTTTGTGTGTTGGAGTTCTGATTCTCATCTTGTTCTAGATAACGCAGTTGAGTGCTAATAAAGGGCATAGTTTGCATAGGTCGTGATGAGGTTATGTGTAAGACTTGGTCTTAAGCTCGTGAGAGTGTGAATTCTGTCGCAGTCTGTTGCCCAATTCCATGAGGTTGTTCTATCTACTCTCTTGGGTGAAGTTAGTGAATTGAGCCTCCTTTTGTTGTTCCATATTAGCAATAGCTGGCTATGTATTCTGGTTTAGTAGACCTAACCATCATCCTAATCTTTGCTCTCAACTGTGCCTAGAAGCGTCTTTGGTTTGCCGGCCAATGAGATCTTTGGGATTGACCTCACCTTCTTCGAGGCTTCGCTGGACAATGTCCACTTGAGACTGCCCCTTGGCCCGTGGGTCGGGGCAAAAGGGTTGGAATTCTAACTCTTTCACAGTGGTATCTCACTTATGGCTTAGGCCCCTTTTGTCCTCCAACTAAGCTGCACAAGAAAGGCCTAAAGGCAATCCAACTTGTGTTCTTCAGCCATGATCACTACTCTGCTCATGGAAGGTTGATAGAGGGATAGAAATTCTAAAGGAGAGCGTTCATTGCTAAGATAGTGAAGGGTTTTACATACAATACTCTATTATTGAGGAGTTGGGGTTGGCGTGAGGAAGAAATTTCACAAAGGTCTCGCAGCCTTTTGTTTTACTCCTTTTTGGAGCATTCTCCACAAACGTTCGTTGTTTCATGGACACCTGATTTAGTCATGATGCAATCTGTAGAAACAGACTCCCAAGTATTATTTTCTTCTAGATTTTTATTTTCTCTCTTTCTAGAATGAGAGTTTTGTTCCTGAAGTTATGGTTCTTAAATTGTGAAGGTACATGCTAAATCTCACATAACTTCATAAATTGGGAAGGTACATGCGGTAAAATCTCACATATATGAGAGGGAAACAAAACATTAGTTTGAAACAAAACATTAGTTTTGGAAACCTTAAGAAGTAACTCAAAAGGGAAAGTATCTACTCATGATGGGCTTAAGTTGTTACAAATGGAATCAGAGCCCGATATTGGACAGTGTGCCAGGGAACGCTGGCCCCAAAGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGAAACGAGTACCAGCAAGGACACTGGGTCCCGAAGGGAGGAGATCCAACATTGATTGGAGAGGGAAACGAAACATTACTTGTAAGGGTGTGAAAACTTCTCTCTAGTAAACACATTTTAAAAATATTAAAGAACATACATATCTCCTAGCAGGGCTTGGACAGTTGCACGGTTCCACATACATATGAATTTAAACAATCAAACCTCTTACTACATTTGTCCCTCATTACTGACATAGTTTTGAATGATCAAATCATGATTGTAACAAGTGGCTCCTTCCATAAATTTCAGGGCTTTCGGAAAATAGATACAGATTGCTGGGTATTTGCAACTGATGGATTCATTAAGGGACAAAAACATCTCTTAAAGAACATCTACAGAAGGAAAAACATCCAGGGCACAGATCAGCATAACGCAGCGCAGCCCCAAGACAAGTCTGAGGGACAAGTTGAACTACATGATTATACAGAGCTGTGGAAGGAAGTTGAGAGTCTTAAAATTGATAAAAATTCTGTCATGCAGGAATTGGTTAAACTTAAGCAGCACCAAGAAACTTCAGAGGACAAGTTGCTCGTATTGAGAGACCGCCTTCAAGGTGTGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCAGTGCAAAGCCCTGGGTTTTTGGTTCAGTTTCTTCAACCGAAAGAGAAGAATTGGCGCATGGCCGACACGAGCAATATGCTAGAACAAATACCAGATGATAAACAAGTACCTTCAAATGGTATGATAGTCAGGTATCATCAACGACCACTAGATGAACTGCCAGCAAATCTACTTCCAGCAGTGTCGGGTATGGGGAAACAGCAAGAATCTGATCCATTTCCTGATGGAATGAAGGACTTTTTCCTTAATTCTGACTTCATGAAAGTGCTTATGGATGAAAAGTTGTGTTTAGACAATCATACTCAATTTGTTCTTCCAGATGTACAAGATGTTGCATGGGAGCAGCTTCTTCTAGCTAGTCCTTTTTCTGGGAATTCAGATAATGCTACAAAAATTGACCACGAAAAACGATCTGTGGACAATGAGGACGATGAACTGGATATGGAAACAATTGATACTCGAACTCATGAAGAGAAGTCTCAGGATTTTGAGATTCTAATCAGGCAAATGGAGAAATGTGAAACTTTTGAGATGTCACAAAGGTTGGATGAATCTTAA

mRNA sequence

TTCTTTTGTCGTAATCGATTTAGCGATGGTGAAATCCGCGGCGGAGCGGCAGGGATCGACGGTGGCGCCGTTCGTGAAGAAGTTGTATGAGATGGTTGACGACGACGCCACCAATTCGATTATCGCGTGGAGCCCTACGGAGGATAGCTTTACGATTGTGGACATCACCCAATTCTGTGTCCACATGCTTCCCAAGTACTTTAAGCACAGCAATTTCTCTAGCTTCATGCGCCAGCTTAATATCTATGGCTTTCGGAAAATAGATACAGATTGCTGGGTATTTGCAACTGATGGATTCATTAAGGGACAAAAACATCTCTTAAAGAACATCTACAGAAGGAAAAACATCCAGGGCACAGATCAGCATAACGCAGCGCAGCCCCAAGACAAGTCTGAGGGACAAGTTGAACTACATGATTATACAGAGCTGTGGAAGGAAGTTGAGAGTCTTAAAATTGATAAAAATTCTGTCATGCAGGAATTGGTTAAACTTAAGCAGCACCAAGAAACTTCAGAGGACAAGTTGCTCGTATTGAGAGACCGCCTTCAAGGTGTGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCAGTGCAAAGCCCTGGGTTTTTGGTTCAGTTTCTTCAACCGAAAGAGAAGAATTGGCGCATGGCCGACACGAGCAATATGCTAGAACAAATACCAGATGATAAACAAGTACCTTCAAATGGTATGATAGTCAGGTATCATCAACGACCACTAGATGAACTGCCAGCAAATCTACTTCCAGCAGTGTCGGGTATGGGGAAACAGCAAGAATCTGATCCATTTCCTGATGGAATGAAGGACTTTTTCCTTAATTCTGACTTCATGAAAGTGCTTATGGATGAAAAGTTGTGTTTAGACAATCATACTCAATTTGTTCTTCCAGATGTACAAGATGTTGCATGGGAGCAGCTTCTTCTAGCTAGTCCTTTTTCTGGGAATTCAGATAATGCTACAAAAATTGACCACGAAAAACGATCTGTGGACAATGAGGACGATGAACTGGATATGGAAACAATTGATACTCGAACTCATGAAGAGAAGTCTCAGGATTTTGAGATTCTAATCAGGCAAATGGAGAAATGTGAAACTTTTGAGATGTCACAAAGGTTGGATGAATCTTAA

Coding sequence (CDS)

ATGGTGAAATCCGCGGCGGAGCGGCAGGGATCGACGGTGGCGCCGTTCGTGAAGAAGTTGTATGAGATGGTTGACGACGACGCCACCAATTCGATTATCGCGTGGAGCCCTACGGAGGATAGCTTTACGATTGTGGACATCACCCAATTCTGTGTCCACATGCTTCCCAAGTACTTTAAGCACAGCAATTTCTCTAGCTTCATGCGCCAGCTTAATATCTATGGCTTTCGGAAAATAGATACAGATTGCTGGGTATTTGCAACTGATGGATTCATTAAGGGACAAAAACATCTCTTAAAGAACATCTACAGAAGGAAAAACATCCAGGGCACAGATCAGCATAACGCAGCGCAGCCCCAAGACAAGTCTGAGGGACAAGTTGAACTACATGATTATACAGAGCTGTGGAAGGAAGTTGAGAGTCTTAAAATTGATAAAAATTCTGTCATGCAGGAATTGGTTAAACTTAAGCAGCACCAAGAAACTTCAGAGGACAAGTTGCTCGTATTGAGAGACCGCCTTCAAGGTGTGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCAGTGCAAAGCCCTGGGTTTTTGGTTCAGTTTCTTCAACCGAAAGAGAAGAATTGGCGCATGGCCGACACGAGCAATATGCTAGAACAAATACCAGATGATAAACAAGTACCTTCAAATGGTATGATAGTCAGGTATCATCAACGACCACTAGATGAACTGCCAGCAAATCTACTTCCAGCAGTGTCGGGTATGGGGAAACAGCAAGAATCTGATCCATTTCCTGATGGAATGAAGGACTTTTTCCTTAATTCTGACTTCATGAAAGTGCTTATGGATGAAAAGTTGTGTTTAGACAATCATACTCAATTTGTTCTTCCAGATGTACAAGATGTTGCATGGGAGCAGCTTCTTCTAGCTAGTCCTTTTTCTGGGAATTCAGATAATGCTACAAAAATTGACCACGAAAAACGATCTGTGGACAATGAGGACGATGAACTGGATATGGAAACAATTGATACTCGAACTCATGAAGAGAAGTCTCAGGATTTTGAGATTCTAATCAGGCAAATGGAGAAATGTGAAACTTTTGAGATGTCACAAAGGTTGGATGAATCTTAA

Protein sequence

MVKSAAERQGSTVAPFVKKLYEMVDDDATNSIIAWSPTEDSFTIVDITQFCVHMLPKYFKHSNFSSFMRQLNIYGFRKIDTDCWVFATDGFIKGQKHLLKNIYRRKNIQGTDQHNAAQPQDKSEGQVELHDYTELWKEVESLKIDKNSVMQELVKLKQHQETSEDKLLVLRDRLQGVEKNQQQMLSFLVMAVQSPGFLVQFLQPKEKNWRMADTSNMLEQIPDDKQVPSNGMIVRYHQRPLDELPANLLPAVSGMGKQQESDPFPDGMKDFFLNSDFMKVLMDEKLCLDNHTQFVLPDVQDVAWEQLLLASPFSGNSDNATKIDHEKRSVDNEDDELDMETIDTRTHEEKSQDFEILIRQMEKCETFEMSQRLDES
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7031494.13.8e-212100.00Heat stress transcription factor A-8 [Cucurbita argyrosperma subsp. argyrosperma... [more]
KAG6600859.13.8e-212100.00Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6, partial [Cucurbita arg... [more]
XP_023539565.11.9e-21199.47heat stress transcription factor A-8-like [Cucurbita pepo subsp. pepo][more]
XP_022941919.13.2e-21199.47heat stress transcription factor A-8-like [Cucurbita moschata][more]
XP_022990250.18.8e-20998.94heat stress transcription factor A-8-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9S7U51.2e-7243.86Heat stress transcription factor A-8 OS=Arabidopsis thaliana OX=3702 GN=HSFA8 PE... [more]
Q84T611.9e-5243.91Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
P411532.4e-5244.40Heat shock factor protein HSF8 OS=Solanum peruvianum OX=4082 GN=HSF8 PE=2 SV=1[more]
Q401524.2e-5244.40Heat shock factor protein HSF8 OS=Solanum lycopersicum OX=4081 GN=HSF8 PE=3 SV=1[more]
P411511.2e-5144.16Heat stress transcription factor A-1a OS=Arabidopsis thaliana OX=3702 GN=HSFA1A ... [more]
Match NameE-valueIdentityDescription
A0A6J1FPU91.6e-21199.47heat stress transcription factor A-8-like OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1JPL44.3e-20998.94heat stress transcription factor A-8-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A1S3CMJ83.0e-17883.78heat stress transcription factor A-8 OS=Cucumis melo OX=3656 GN=LOC103502515 PE=... [more]
A0A0A0KMJ27.4e-17783.24HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G025910 ... [more]
A0A6J1FNX42.9e-17382.98heat stress transcription factor A-8-like isoform X1 OS=Cucurbita moschata OX=36... [more]
Match NameE-valueIdentityDescription
AT1G67970.18.9e-7443.86heat shock transcription factor A8 [more]
AT4G17750.18.6e-5344.16heat shock factor 1 [more]
AT1G32330.11.7e-4842.71heat shock transcription factor A1D [more]
AT5G16820.11.4e-4744.35heat shock factor 3 [more]
AT5G16820.21.4e-4744.35heat shock factor 3 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..350
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 315..350
NoneNo IPR availablePANTHERPTHR10015:SF325HEAT STRESS TRANSCRIPTION FACTOR A-8coord: 1..346
IPR000232Heat shock factor (HSF)-type, DNA-bindingPRINTSPR00056HSFDOMAINcoord: 67..79
score: 76.26
coord: 54..66
score: 73.63
coord: 16..39
score: 41.9
IPR000232Heat shock factor (HSF)-type, DNA-bindingSMARTSM00415hsfneu3coord: 12..105
e-value: 4.3E-46
score: 169.1
IPR000232Heat shock factor (HSF)-type, DNA-bindingPFAMPF00447HSF_DNA-bindcoord: 16..105
e-value: 1.4E-28
score: 99.3
IPR000232Heat shock factor (HSF)-type, DNA-bindingPROSITEPS00434HSF_DOMAINcoord: 55..79
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 8..106
e-value: 9.4E-33
score: 114.8
IPR027725Heat shock transcription factor familyPANTHERPTHR10015HEAT SHOCK TRANSCRIPTION FACTORcoord: 1..346
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 11..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00149-RACarg00149-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034605 cellular response to heat
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding