CSPI07G15980 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G15980
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr7: 14628563 .. 14629468 (+)
RNA-Seq ExpressionCSPI07G15980
SyntenyCSPI07G15980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACATTTAGAATCGATTTTGAAGGAAAACCGACTCGATCCAACCCAATTATAGGGTACAATCCGGGAAAATTGATGGAAATACAACAGCAACAGAATTTTTTGTATAAAGGTATAGTATAAATTTTGGTATAATTATATATTCTTTCCTTATTTACCTGTGTTATCAATAATTATTTTCCCATTTATCTCTCATCTAAACCAATCTTCTCAAAAAAATTAAGGGATATTGTAAAACTTGGAAGGTGGAAGAAGCAATGGACCTTTACAATGAAATGCTGAAAACATATACTACCTTATTAACAGGATACTTTTTCGGACAGACAAGGTTGGTGATGCAAGAAAGCTATTTGGTGTCATGAAAGCTTATCGTATTTCTGCAGATTCTCATATATATGGTATTTTATTAGATGGACTATGTAAGAATGGTTGTTTATTTGAAGGGATGAAACTTTTTAATGAGCTAAAATCATACAACTTCAAATTCGACATTGAAAGCTATAATTGTCTCATGGATGTAAAGCAGGAAAAGTTGAAACTGCTTGGGAGCTTTTTGAAAAATTATCCCAAGAAGGGCTTCAACCAGATGTTGTGACTTATAAAATTAAAATCCATGAGTTTTGTAAGGTGGGACAAGTAGATATGGTAAATATTTTGTTTGAAAATACAGAAGAAAATGGTTGTACTTCTAACATAATTACTTATAATACCCCTATGCATGGTTTCTGCAAGAGTAATAAATTAAAGGAGGTGGTTAAACGACTCCATAAGATGGTTCAAAGGGATGTGTCACCCGATGCTAGCATTTGCACCATAGTCACTGACATGTTTTGCAAAGATGAAAAATATCGAGAATGTCTAAACTTGCTTCCAAGATTTTTAGTCCAAGAGCGTCGAGGTTGA

mRNA sequence

ATGCATACATTTAGAATCGATTTTGAAGGAAAACCGACTCGATCCAACCCAATTATAGGGTACAATCCGGGAAAATTGATGGAAATACAACAGCAACAGAATTTTTTGTATAAAGACAAGGTTGGTGATGCAAGAAAGCTATTTGGTGTCATGAAAGCTTATCGTATTTCTGCAGATTCTCATATATATGGAAAAGTTGAAACTGCTTGGGAGCTTTTTGAAAAATTATCCCAAGAAGGGCTTCAACCAGATGTTGTGACTTATAAAATTAAAATCCATGAGTTTTGTAAGGTGGGACAAGTAGATATGAGTAATAAATTAAAGGAGGTGGTTAAACGACTCCATAAGATGGTTCAAAGGGATGTGTCACCCGATGCTAGCATTTGCACCATAGTCACTGACATGTTTTGCAAAGATGAAAAATATCGAGAATGTCTAAACTTGCTTCCAAGATTTTTAGTCCAAGAGCGTCGAGGTTGA

Coding sequence (CDS)

ATGCATACATTTAGAATCGATTTTGAAGGAAAACCGACTCGATCCAACCCAATTATAGGGTACAATCCGGGAAAATTGATGGAAATACAACAGCAACAGAATTTTTTGTATAAAGACAAGGTTGGTGATGCAAGAAAGCTATTTGGTGTCATGAAAGCTTATCGTATTTCTGCAGATTCTCATATATATGGAAAAGTTGAAACTGCTTGGGAGCTTTTTGAAAAATTATCCCAAGAAGGGCTTCAACCAGATGTTGTGACTTATAAAATTAAAATCCATGAGTTTTGTAAGGTGGGACAAGTAGATATGAGTAATAAATTAAAGGAGGTGGTTAAACGACTCCATAAGATGGTTCAAAGGGATGTGTCACCCGATGCTAGCATTTGCACCATAGTCACTGACATGTTTTGCAAAGATGAAAAATATCGAGAATGTCTAAACTTGCTTCCAAGATTTTTAGTCCAAGAGCGTCGAGGTTGA

Protein sequence

MHTFRIDFEGKPTRSNPIIGYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIYGKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNLLPRFLVQERRG*
Homology
[Close]
BLAST of CSPI07G15980 vs. ExPASy Swiss-Prot
Match: Q9FND8 (Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX=3702 GN=At5g40400 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 36/149 (24.16%), Postives = 69/149 (46.31%), Query Frame = 0 

Query: 20  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETA 79
           G+ P  +       ++  + ++ +A  L+ +M   R+  D   Y          G+V  A
Sbjct: 266 GFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREA 325

Query: 80  WELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASIC 139
            + F ++   G++PD ++Y   I+ +CK G +  S KL      LH+M+   V PD   C
Sbjct: 326 HQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKL------LHEMLGNSVVPDRFTC 385

Query: 140 TIVTDMFCKDEKYRECLNLLPRFLVQERR 159
            ++ + F ++ +    +N    F+V+ RR
Sbjct: 386 KVIVEGFVREGRLLSAVN----FVVELRR 404

[Close]
BLAST of CSPI07G15980 vs. ExPASy Swiss-Prot
Match: Q9FIT7 (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 38/127 (29.92%), Postives = 67/127 (52.76%), Query Frame = 0 

Query: 34  NFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQ 93
           N L+K DKV DA ++F  M+   I+ D   Y          G ++ A  +F+++ +EGL 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659

Query: 94  PDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDA-SICTIVTDMFCKDEK 149
           P+V+ Y + +  FC+ G+++ + +L      L +M  + + P+A + CTI+ D +CK   
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKEL------LDEMSVKGLHPNAVTYCTII-DGYCKSGD 719

[Close]
BLAST of CSPI07G15980 vs. ExPASy Swiss-Prot
Match: Q9LN69 (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana OX=3702 GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 35/125 (28.00%), Postives = 62/125 (49.60%), Query Frame = 0 

Query: 40  KVGDARKLFG-VMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTY 99
           K+ DARKLF  ++ + R   D + Y          G +  A+ L ++++ +G+ P++VTY
Sbjct: 734 KLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTY 793

Query: 100 KIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNL 154
              I   CK+G VD + +L      LHK+ Q+ ++P+A     + D   K     E + L
Sbjct: 794 NALIKGLCKLGNVDRAQRL------LHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRL 852

[Close]
BLAST of CSPI07G15980 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 38/139 (27.34%), Postives = 60/139 (43.17%), Query Frame = 0 

Query: 20  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETA 79
           GY P  +        F   ++V DA  L   M+      D  IY          G V  A
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193

Query: 80  WELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASIC 139
            ELF+++ ++G++ D VTY   +   C       S +  +  + +  MV RD+ P+    
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLC------CSGRWSDAARLMRDMVMRDIVPNVITF 253

Query: 140 TIVTDMFCKDEKYRECLNL 149
           T V D+F K+ K+ E + L
Sbjct: 254 TAVIDVFVKEGKFSEAMKL 266

[Close]
BLAST of CSPI07G15980 vs. ExPASy Swiss-Prot
Match: Q9ZUE9 (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX=3702 GN=At2g06000 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 44/141 (31.21%), Postives = 64/141 (45.39%), Query Frame = 0 

Query: 24  GKLMEIQQQQNFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWEL 83
           G  M +    N L K D+V DA KLF     ++   D+  +          GK E A EL
Sbjct: 169 GCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALEL 228

Query: 84  FEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASICTIV 143
              +S  G +PD+VTY   I  FCK  +++ ++++ + VK          SPD    T +
Sbjct: 229 LGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS-----GSVCSPDVVTYTSM 288

Query: 144 TDMFCKDEKYRECLNLLPRFL 154
              +CK  K RE  +LL   L
Sbjct: 289 ISGYCKAGKMREASSLLDDML 304

[Close]
BLAST of CSPI07G15980 vs. ExPASy TrEMBL
Match: A0A5D3DRB9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001320 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.3e-34
Identity = 99/210 (47.14%), Postives = 108/210 (51.43%), Query Frame = 0 

Query: 25  KLMEIQQQQNFLYK-----DKVGDARKLFGVMKAYRISADSHIY---------------- 84
           KL E+  Q+  + +      KVGDARKLFGVMKAY ISADS IY                
Sbjct: 307 KLHEVMIQRGIVLRGLFQTSKVGDARKLFGVMKAYDISADSCIYGVFLDGLCKNGCLFEA 366

Query: 85  -----------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE 144
                                        G +ETAWELFEKLSQEG+QPDVVTY I I+ 
Sbjct: 367 MKLFKELKSYNYKLDIENYSCLIDDLCKAGNLETAWELFEKLSQEGIQPDVVTYYIMING 426

Query: 145 FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPD 156
           FCKVGQ D                              +NK  EVVK LHKMVQRDVS  
Sbjct: 427 FCKVGQADKANILFEKMEETGCTPNIITYETLMQGFCQNNKSYEVVKLLHKMVQRDVSLG 486

[Close]
BLAST of CSPI07G15980 vs. ExPASy TrEMBL
Match: A0A0A0K784 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.6e-33
Identity = 88/190 (46.32%), Postives = 103/190 (54.21%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLFGVMK Y +SA+S IY                                    
Sbjct: 176 KVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYS 235

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMS---------- 156
                    GK+ETAWELFEKLSQEGLQPDVVTY I IH FCKVGQVD +          
Sbjct: 236 CLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEEN 295

[Close]
BLAST of CSPI07G15980 vs. ExPASy TrEMBL
Match: A0A0A0K5M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.6e-33
Identity = 93/193 (48.19%), Postives = 100/193 (51.81%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLF V+K Y ISADS IY                                    
Sbjct: 176 KVGDAKKLFRVLKTYGISADSCIYRIFLDGLCKNGCLYEAMEHFNQLKSYNIKLDIESYN 235

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVD------------ 159
                    GK+ETAWELFEKL QEGLQ DVVTY I IH FCKVGQVD            
Sbjct: 236 CLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEEN 295

[Close]
BLAST of CSPI07G15980 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 90/192 (46.88%), Postives = 100/192 (52.08%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLF  MKA+ I+ +S IY                                    
Sbjct: 376 KVGDAKKLFSAMKAHGIAENSCIYSIFLDGLCKNGCLFEAMELFTKLKSYNFKLEIETYS 435

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVD------------ 158
                    GK+ETAWELFEKLSQEGLQP+VVTY I I  FCK G VD            
Sbjct: 436 CLIDGLCKAGKLETAWELFEKLSQEGLQPNVVTYNIMISGFCKAGLVDKANILFEKMEEN 495

[Close]
BLAST of CSPI07G15980 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 87/194 (44.85%), Postives = 101/194 (52.06%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLF  MKA  ISA+SHIY                                    
Sbjct: 376 KVGDAKKLFSAMKARGISANSHIYGIILDGLCKNGCLFEAMKLFTELKSYNFKLDIETYS 435

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDM----------- 159
                    GK+ETAWELFEKLSQEGLQP+VVTY I IH  C+ GQVD            
Sbjct: 436 CLIDGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVDKANVLIQKMETN 495

[Close]
BLAST of CSPI07G15980 vs. NCBI nr
Match: KAA0064045.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26203.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 4.7e-34
Identity = 99/210 (47.14%), Postives = 108/210 (51.43%), Query Frame = 0 

Query: 25  KLMEIQQQQNFLYK-----DKVGDARKLFGVMKAYRISADSHIY---------------- 84
           KL E+  Q+  + +      KVGDARKLFGVMKAY ISADS IY                
Sbjct: 307 KLHEVMIQRGIVLRGLFQTSKVGDARKLFGVMKAYDISADSCIYGVFLDGLCKNGCLFEA 366

Query: 85  -----------------------------GKVETAWELFEKLSQEGLQPDVVTYKIKIHE 144
                                        G +ETAWELFEKLSQEG+QPDVVTY I I+ 
Sbjct: 367 MKLFKELKSYNYKLDIENYSCLIDDLCKAGNLETAWELFEKLSQEGIQPDVVTYYIMING 426

Query: 145 FCKVGQVD-----------------------------MSNKLKEVVKRLHKMVQRDVSPD 156
           FCKVGQ D                              +NK  EVVK LHKMVQRDVS  
Sbjct: 427 FCKVGQADKANILFEKMEETGCTPNIITYETLMQGFCQNNKSYEVVKLLHKMVQRDVSLG 486

[Close]
BLAST of CSPI07G15980 vs. NCBI nr
Match: XP_011659273.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus] >KAE8646303.1 hypothetical protein Csa_016074 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-33
Identity = 89/192 (46.35%), Postives = 104/192 (54.17%), Query Frame = 0 

Query: 38  KDKVGDARKLFGVMKAYRISADSHIY---------------------------------- 97
           K KVGDA+KLFGVMK Y +SA+S IY                                  
Sbjct: 425 KGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIEN 484

Query: 98  -----------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMS-------- 156
                      GK+ETAWELFEKLSQEGLQPDVVTY I IH FCKVGQVD +        
Sbjct: 485 YSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKME 544

[Close]
BLAST of CSPI07G15980 vs. NCBI nr
Match: XP_038897332.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 89/192 (46.35%), Postives = 101/192 (52.60%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLFGVMKAY ++ DS IY                                    
Sbjct: 385 KVGDAKKLFGVMKAYGVAIDSCIYGIFLDGLCKNGCLFEAMELFNELKSYNLKLDIGIFN 444

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDM----------- 158
                    G +ETAWELF+KLSQEGLQP+VVTY I IH FC+ GQVD            
Sbjct: 445 CLIDGLCKVGTLETAWELFKKLSQEGLQPNVVTYNIMIHGFCRKGQVDKANILFQHMEEN 504

[Close]
BLAST of CSPI07G15980 vs. NCBI nr
Match: KGN45331.2 (hypothetical protein Csa_015776 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 93/193 (48.19%), Postives = 100/193 (51.81%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLF V+K Y ISADS IY                                    
Sbjct: 427 KVGDAKKLFRVLKTYGISADSCIYRIFLDGLCKNGCLYEAMEHFNQLKSYNIKLDIESYN 486

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVD------------ 159
                    GK+ETAWELFEKL QEGLQ DVVTY I IH FCKVGQVD            
Sbjct: 487 CLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEEN 546

[Close]
BLAST of CSPI07G15980 vs. NCBI nr
Match: XP_038896203.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32
Identity = 90/192 (46.88%), Postives = 100/192 (52.08%), Query Frame = 0 

Query: 40  KVGDARKLFGVMKAYRISADSHIY------------------------------------ 99
           KVGDA+KLFGVMKAY +  DS IY                                    
Sbjct: 443 KVGDAKKLFGVMKAYGVPIDSCIYGIFLDGLCKNGCLFEAMEFFNELKSYNLKLDIGIFN 502

Query: 100 ---------GKVETAWELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVD------------ 158
                    GK+ETAWELF+KLSQEGLQP+VVTY I IH FC+ GQVD            
Sbjct: 503 SLIDGLCKVGKLETAWELFKKLSQEGLQPNVVTYNIMIHGFCRKGQVDNANILFQHMEEN 562

[Close]
BLAST of CSPI07G15980 vs. TAIR 10
Match: AT5G40400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 36/149 (24.16%), Postives = 69/149 (46.31%), Query Frame = 0 

Query: 20  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETA 79
           G+ P  +       ++  + ++ +A  L+ +M   R+  D   Y          G+V  A
Sbjct: 266 GFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREA 325

Query: 80  WELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASIC 139
            + F ++   G++PD ++Y   I+ +CK G +  S KL      LH+M+   V PD   C
Sbjct: 326 HQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKL------LHEMLGNSVVPDRFTC 385

Query: 140 TIVTDMFCKDEKYRECLNLLPRFLVQERR 159
            ++ + F ++ +    +N    F+V+ RR
Sbjct: 386 KVIVEGFVREGRLLSAVN----FVVELRR 404

[Close]
BLAST of CSPI07G15980 vs. TAIR 10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.2e-09
Identity = 38/127 (29.92%), Postives = 67/127 (52.76%), Query Frame = 0 

Query: 34  NFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQ 93
           N L+K DKV DA ++F  M+   I+ D   Y          G ++ A  +F+++ +EGL 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659

Query: 94  PDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDA-SICTIVTDMFCKDEK 149
           P+V+ Y + +  FC+ G+++ + +L      L +M  + + P+A + CTI+ D +CK   
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKEL------LDEMSVKGLHPNAVTYCTII-DGYCKSGD 719

[Close]
BLAST of CSPI07G15980 vs. TAIR 10
Match: AT1G19290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.5e-09
Identity = 35/125 (28.00%), Postives = 62/125 (49.60%), Query Frame = 0 

Query: 40  KVGDARKLFG-VMKAYRISADSHIY----------GKVETAWELFEKLSQEGLQPDVVTY 99
           K+ DARKLF  ++ + R   D + Y          G +  A+ L ++++ +G+ P++VTY
Sbjct: 734 KLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTY 793

Query: 100 KIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASICTIVTDMFCKDEKYRECLNL 154
              I   CK+G VD + +L      LHK+ Q+ ++P+A     + D   K     E + L
Sbjct: 794 NALIKGLCKLGNVDRAQRL------LHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRL 852

[Close]
BLAST of CSPI07G15980 vs. TAIR 10
Match: AT1G62720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08
Identity = 38/139 (27.34%), Postives = 60/139 (43.17%), Query Frame = 0 

Query: 20  GYNPGKLMEIQQQQNFLYKDKVGDARKLFGVMKAYRISADSHIY----------GKVETA 79
           GY P  +        F   ++V DA  L   M+      D  IY          G V  A
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 193

Query: 80  WELFEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASIC 139
            ELF+++ ++G++ D VTY   +   C       S +  +  + +  MV RD+ P+    
Sbjct: 194 VELFDRMERDGVRADAVTYNSLVAGLC------CSGRWSDAARLMRDMVMRDIVPNVITF 253

Query: 140 TIVTDMFCKDEKYRECLNL 149
           T V D+F K+ K+ E + L
Sbjct: 254 TAVIDVFVKEGKFSEAMKL 266

[Close]
BLAST of CSPI07G15980 vs. TAIR 10
Match: AT2G06000.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 44/141 (31.21%), Postives = 64/141 (45.39%), Query Frame = 0 

Query: 24  GKLMEIQQQQNFLYK-DKVGDARKLFGVMKAYRISADSHIY----------GKVETAWEL 83
           G  M +    N L K D+V DA KLF     ++   D+  +          GK E A EL
Sbjct: 169 GCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALEL 228

Query: 84  FEKLSQEGLQPDVVTYKIKIHEFCKVGQVDMSNKLKEVVKRLHKMVQRDVSPDASICTIV 143
              +S  G +PD+VTY   I  FCK  +++ ++++ + VK          SPD    T +
Sbjct: 229 LGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS-----GSVCSPDVVTYTSM 288

Query: 144 TDMFCKDEKYRECLNLLPRFL 154
              +CK  K RE  +LL   L
Sbjct: 289 ISGYCKAGKMREASSLLDDML 304

The following BLAST results are available for this feature:
BLAST of CSPI07G15980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FND84.6e-0824.16Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana OX... [more]
Q9FIT71.0e-0729.92Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop... [more]
Q9LN691.3e-0728.00Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis th... [more]
Q9SI782.3e-0727.34Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX... [more]
Q9ZUE93.0e-0731.21Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX... [more]
BLAST of CSPI07G15980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DRB92.3e-3447.14Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0K7845.6e-3346.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G380110 PE=4 SV=1[more]
A0A0A0K5M05.6e-3348.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1[more]
A0A5A7UUW82.8e-3246.88Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DYL61.8e-3144.85pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
BLAST of CSPI07G15980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0064045.14.7e-3447.14pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26203... [more]
XP_011659273.24.0e-3346.35pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sa... [more]
XP_038897332.11.2e-3246.35pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benin... [more]
KGN45331.21.2e-3248.19hypothetical protein Csa_015776 [Cucumis sativus][more]
XP_038896203.11.5e-3246.88pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida][more]
BLAST of CSPI07G15980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G40400.13.3e-0924.16Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G61990.17.2e-0929.92Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G19290.19.5e-0928.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62720.11.6e-0827.34Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G06000.12.1e-0831.21Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 64..97
e-value: 5.3E-8
score: 32.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 33..157
e-value: 5.1E-16
score: 60.9
NoneNo IPR availablePANTHERPTHR47939MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKEcoord: 40..106
coord: 64..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G15980.1CSPI07G15980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding