CSPI02G07610 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G07610
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Hexosyltransferase
Location	Chr2: 6560957 .. 6562034 (-)
RNA-Seq Expression	CSPI02G07610
Synteny	CSPI02G07610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGCAGAGAAAGAATTTTCAATTTTCAATTTTCGATCGCGGTATTCATCAAACCTTCAAAAGGATTTTCCCCTTTTGATATTCTCCCAAAAATTCCCAATTTTCCCACGAAATTTGGGGATTAATTTTATTTGTAGATTATAATGAAACCAATCGCTTGGATTTTCCTGCCATTCGCCTTGGTTTTGATTCAATCTCTAGTCTCAGCAGCTTCTTCATCTTCTTCTTCTTCCGGATCACAGTCTTCCGATGAAGCTTATGTTACCCTTTTGTATGGCGATGAATTTCTTTTGGGTGTTCGAGTTCTTGGGAAATCGATTCGCGACACTGGCTCCAACAAGGACATGGTGGCCTTGATTTCTGATGGGGTTTCTGAGTATGCTAAGAAGCTACTAGAGGTTAGCTTCTACTTTGCTTTTTTGTTTCCAACAAATTCGAGCTATTACTACAACTTATCCACGAGTACTTCTCTTTGTTTTTTTTTTCTTTTCTTCTGAAATTGTAGTCTTGAAGTTAAATTTGTTGGATACTTCGAATTCAACCTATATGTTGATTTATTCTGCAAGTGTGTGGATCCTTATATAATTAGAGTAATTAGCGATCCTTTGAATGGAGATAAAGGGAGTTTTCTCGAGCACTTTCCCCCCACTGGCTGATAACTTAATGGAAATGGGAGTATCTGCGATGAAAAATAGTTTGATAGTAGAAGTCTGTGGTGAACGCCTACTTAGAACATTCTAATTTGAAGTGTAATCTAACGACCAAGTTGTTGTGGAGTTGACAGCTCTAACTTTGAAATTAGTTTAAGTGTGAACAAGGTATCCTAAACATTTACAAGTATCAAATTTAGAAGAATTTTGAAAGTGTTGAATTAAATCTCTCCTCCGTGATCTGTCCGATGTGAATAATGGATGTATGACGTCATTTTATCTGATTTTCTTTAAGAGTTCAGGTGTGCATGTCGTCTCTGCCCAGTCTCTTCCTGATCGGTGTGGGCATGTTAAGTAGAATCATACCTAGAGGGGAGGAACATAATGTCCTTGAAGGTTACAAAGTTGGTAGGGATAGTTCGCAGTGA

mRNA sequence

CATGCAGAGAAAGAATTTTCAATTTTCAATTTTCGATCGCGGTATTCATCAAACCTTCAAAAGGATTTTCCCCTTTTGATATTCTCCCAAAAATTCCCAATTTTCCCACGAAATTTGGGGATTAATTTTATTTGTAGATTATAATGAAACCAATCGCTTGGATTTTCCTGCCATTCGCCTTGGTTTTGATTCAATCTCTAGTCTCAGCAGCTTCTTCATCTTCTTCTTCTTCCGGATCACAGTCTTCCGATGAAGCTTATGTTACCCTTTTGTATGGCGATGAATTTCTTTTGGGTGTTCGAGTTCTTGGGAAATCGATTCGCGACACTGGCTCCAACAAGGACATGGTGGCCTTGATTTCTGATGGGGTTTCTGAGTATGCTAAGAAGCTACTAGAGGTGTGCATGTCGTCTCTGCCCAGTCTCTTCCTGATCGGTGTGGGCATGTTAAGTAGAATCATACCTAGAGGGGAGGAACATAATGTCCTTGAAGGTTACAAAGTTGGTAGGGATAGTTCGCAGTGA

Coding sequence (CDS)

ATGAAACCAATCGCTTGGATTTTCCTGCCATTCGCCTTGGTTTTGATTCAATCTCTAGTCTCAGCAGCTTCTTCATCTTCTTCTTCTTCCGGATCACAGTCTTCCGATGAAGCTTATGTTACCCTTTTGTATGGCGATGAATTTCTTTTGGGTGTTCGAGTTCTTGGGAAATCGATTCGCGACACTGGCTCCAACAAGGACATGGTGGCCTTGATTTCTGATGGGGTTTCTGAGTATGCTAAGAAGCTACTAGAGGTGTGCATGTCGTCTCTGCCCAGTCTCTTCCTGATCGGTGTGGGCATGTTAAGTAGAATCATACCTAGAGGGGAGGAACATAATGTCCTTGAAGGTTACAAAGTTGGTAGGGATAGTTCGCAGTGA

Protein sequence

MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVALISDGVSEYAKKLLEVCMSSLPSLFLIGVGMLSRIIPRGEEHNVLEGYKVGRDSSQ*

Homology

[Close]

BLAST of CSPI02G07610 vs. ExPASy Swiss-Prot
Match: Q8GWB7 (Inositol phosphorylceramide glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=IPUT1 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-19
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          +K   W+ L  ALV IQ         + S GS+SS  AYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 4  LKTSLWVLL-LALVSIQ--------LNGSFGSESSKVAYVTLLYGDEFLLGVRVLGKSIR 63

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGS KDMVAL+SDGVS+Y+KKLL+
Sbjct: 64 DTGSTKDMVALVSDGVSDYSKKLLK 79

[Close]

BLAST of CSPI02G07610 vs. ExPASy TrEMBL
Match: A0A5D3DUQ8 (Inositol phosphorylceramide glucuronosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00030 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.9e-34
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSL+SAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLLSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLEVCMSSL 92
          DTGS+KDMVALISDGVSEYAK+LLEV +SSL
Sbjct: 61 DTGSSKDMVALISDGVSEYAKRLLEVYLSSL 90

[Close]

BLAST of CSPI02G07610 vs. ExPASy TrEMBL
Match: A0A0A0LJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078080 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSLVSAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLVSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGSNKDMVALISDGVSEYAKKLLE
Sbjct: 61 DTGSNKDMVALISDGVSEYAKKLLE 84

[Close]

BLAST of CSPI02G07610 vs. ExPASy TrEMBL
Match: A0A5A7U762 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G002030 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.9e-32
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSL+SAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLLSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGS+KDMVALISDGVSEYAK+LLE
Sbjct: 61 DTGSSKDMVALISDGVSEYAKRLLE 84

[Close]

BLAST of CSPI02G07610 vs. ExPASy TrEMBL
Match: A0A1S3B4Z4 (Hexosyltransferase OS=Cucumis melo OX=3656 GN=LOC103485833 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.9e-32
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSL+SAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLLSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGS+KDMVALISDGVSEYAK+LLE
Sbjct: 61 DTGSSKDMVALISDGVSEYAKRLLE 84

[Close]

BLAST of CSPI02G07610 vs. ExPASy TrEMBL
Match: A0A6J1K663 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492036 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 71/85 (83.53%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MK  A IF+  ALV IQS VSAA    SSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKFCALIFVAIALVFIQSRVSAA----SSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGSNKDMVAL+SDGVSEYAK+LLE
Sbjct: 61 DTGSNKDMVALVSDGVSEYAKRLLE 81

[Close]

BLAST of CSPI02G07610 vs. NCBI nr
Match: TYK27242.1 (inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSL+SAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLLSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLEVCMSSL 92
          DTGS+KDMVALISDGVSEYAK+LLEV +SSL
Sbjct: 61 DTGSSKDMVALISDGVSEYAKRLLEVYLSSL 90

[Close]

BLAST of CSPI02G07610 vs. NCBI nr
Match: XP_004152810.1 (inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis sativus] >KAE8651720.1 hypothetical protein Csa_006708 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 5.4e-33
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSLVSAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLVSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGSNKDMVALISDGVSEYAKKLLE
Sbjct: 61 DTGSNKDMVALISDGVSEYAKKLLE 84

[Close]

BLAST of CSPI02G07610 vs. NCBI nr
Match: KAA0050016.1 (inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSL+SAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLLSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGS+KDMVALISDGVSEYAK+LLE
Sbjct: 61 DTGSSKDMVALISDGVSEYAKRLLE 84

[Close]

BLAST of CSPI02G07610 vs. NCBI nr
Match: XP_008441775.1 (PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKPIAWIFLPFALVLIQSL+SAA SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPIAWIFLPFALVLIQSLLSAA-SSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGS+KDMVALISDGVSEYAK+LLE
Sbjct: 61 DTGSSKDMVALISDGVSEYAKRLLE 84

[Close]

BLAST of CSPI02G07610 vs. NCBI nr
Match: XP_038891107.1 (inositol phosphorylceramide glucuronosyltransferase 1 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 76/85 (89.41%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          MKP A+I L  ALVLIQSLVSAASSSSSS  SQSSDEAYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 1  MKPNAFISLAIALVLIQSLVSAASSSSSSR-SQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          +TGSNKDMVALISDGVSEYAK LLE
Sbjct: 61 ETGSNKDMVALISDGVSEYAKSLLE 84

[Close]

BLAST of CSPI02G07610 vs. TAIR 10
Match: AT5G18480.1 (plant glycogenin-like starch initiation protein 6 )

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-20
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MKPIAWIFLPFALVLIQSLVSAASSSSSSSGSQSSDEAYVTLLYGDEFLLGVRVLGKSIR 60
          +K   W+ L  ALV IQ         + S GS+SS  AYVTLLYGDEFLLGVRVLGKSIR
Sbjct: 4  LKTSLWVLL-LALVSIQ--------LNGSFGSESSKVAYVTLLYGDEFLLGVRVLGKSIR 63

Query: 61 DTGSNKDMVALISDGVSEYAKKLLE 86
          DTGS KDMVAL+SDGVS+Y+KKLL+
Sbjct: 64 DTGSTKDMVALVSDGVSDYSKKLLK 79

The following BLAST results are available for this feature:

BLAST of CSPI02G07610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWB7	3.5e-19	65.88	Inositol phosphorylceramide glucuronosyltransferase 1 OS=Arabidopsis thaliana OX...	[more]

BLAST of CSPI02G07610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUQ8	8.9e-34	93.41	Inositol phosphorylceramide glucuronosyltransferase 1 OS=Cucumis melo var. makuw...	[more]
A0A0A0LJP2	2.6e-33	98.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078080 PE=4 SV=1	[more]
A0A5A7U762	4.9e-32	95.29	Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00...	[more]
A0A1S3B4Z4	4.9e-32	95.29	Hexosyltransferase OS=Cucumis melo OX=3656 GN=LOC103485833 PE=3 SV=1	[more]
A0A6J1K663	7.6e-25	83.53	Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492036 PE=3 SV=1	[more]

BLAST of CSPI02G07610 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27242.1	1.8e-33	93.41	inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa]	[more]
XP_004152810.1	5.4e-33	98.82	inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis sativus] >KAE8651...	[more]
KAA0050016.1	1.0e-31	95.29	inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo var. makuwa]	[more]
XP_008441775.1	1.0e-31	95.29	PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Cucumis melo]	[more]
XP_038891107.1	1.3e-26	89.41	inositol phosphorylceramide glucuronosyltransferase 1 [Benincasa hispida]	[more]

BLAST of CSPI02G07610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18480.1	2.5e-20	65.88	plant glycogenin-like starch initiation protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	coord: 34..108 e-value: 2.3E-10 score: 42.2
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 36..87
None	No IPR available	PANTHER	PTHR11183:SF132	HEXOSYLTRANSFERASE	coord: 28..84
None	No IPR available	PANTHER	PTHR11183	GLYCOGENIN SUBFAMILY MEMBER	coord: 28..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G07610.1	CSPI02G07610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009834	plant-type secondary cell wall biogenesis
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015020	glucuronosyltransferase activity