Cucsat.G13186.T13 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13186.T13
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	regulation of nuclear pre-mRNA domain-containing protein 1B-like
Location	ctg1838: 1898086 .. 1904509 (+)
RNA-Seq Expression	Cucsat.G13186.T13
Synteny	Cucsat.G13186.T13

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCATAAAAAAGTGCATTGTACTTTTTTTTTTAAAGTGGAAACAAACTTTTCATTGACAAAATGAAAAGAGATTAAAGATTGAAATACAAGGAGACATAAAGAACATAAAAGAACAACCCCAAAATCAGCCCCAAAAAGCATCTTATAGTTTGATAGATCTAATGAAATTTTATACATTTTTCTTTTTTGATTACAGATCACAATCCATTGACATTTCCTTCTGAATTATCCTTCTCTCGTGTTTTTTTTTTTTTTTCTGTTGTTATTGTTGTTGAAATACACGTCTTGTAATGTTGATTTTAAATTGTAACATCTCTTTCCTTTTTTTCTATTGAAAGTATCTCAAGTGTTATTTAAGTTGGGATTTCATTTGTCTCACTCAATTTTGTTTCCCTTCATGGGAGTTGGTTTGTTAAGGTCAATATTTGGGAAGAAAGGAAGGTTTTTGGTTCTCGGGGGCAGAGTCTTAAGGATGAAATGCTTGGTAAAAATCCACCTCCAACTCCGTTACCCAGCAGCAATGGAAAGAGTTCAAATCCTATAAAAATAGTGAAGAGGGATGCTCACTCTGTGAGAATTGTAAGAGCTTAGCTGTGGTAGCAGTGGACTATTGCAGTTTTTTTTTTTTTTTCTTGTGTTATGACTCCTATATCTTTACTGCTTAACTCTAGAAACTGGCTGTTGGAGGTGTTCCAGAGAAGATTCTTACTGCATTTCAATCTGTCCTTGATGAGCATCTGAATGAAGATGCTGCTCTGATCAACTGTAGCTCTGCTACTCATCATCTGAATCAAATTGAGGAGGACTTGAATGTCTCCTTAGCTCAAGGTATAGCCTCATTTACTATAGTCATCGCATGCAATTTTAGTTTAAGATGTTGTCAAGTAAGCCAAGCTCTGCATTATAAGGGTGGTCTTTGTATGAAGTGATAGTCATGCAATATAGACTTCTGATAGAACCCAAACTTTCAATATCCATTAGAGTATGTTATTATGAAAGGGACCTCATGTACTTTAGATAATCAAGTACTTATGTTTGTAAACGATGTGTTATTAATAAGATATTTATGATAAGTTCAATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTGTATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTGCCTTAAAAAGAAATCTTATCAATGGGATTTAACCTAGTTCATTGGCTATGAGCAACTTTTTTTTCCCTTGTAATGCAATCAGTAATGTTGGACTTTGCAGTATAGGATATCGGGTCTGAATTTGTACCAATACATAGATCTGTGTACTTAATATCAGTATTTTAAGATGCATCCTAGGTGCACTAGGTAACTTGAGGGTGCGCGACTTTTGTACTGAATTGTTGATTTAAGAGCTATGCCTGAGTTGGTATTCTCACTAAGGTGTGCCTATAAGTTTATATTTTAAACAATCTTTATTATACAATTTTTTATTTTTTAGTTTCTCAAAAGACTATATTTTAACAATGTCGTTAAAAACTCATTTCTTTTAAGTTTTCATTATTTATAAGACTATTTTATGGATACATGTCTTTCTTTATACTTTTCTGGTTTGTTCTTGAAAAACATTACTTATTTTTTGTTTTCCATTTTCTTGAAAAACATTCCTTATATTTTTGCTTTGCATTTACTTTCTAGACATCTATTGCGTCTTCAGTGCATCGTGCAGTTTACAATACACTATTACACAAAGATACTATTAGTATTATTTATTCAGATACTATGAATTATAGGCATCTCATTTTATACAATAGTAGAATTCATGAGGATGCCAAATCATTAGGTAATGCATTCAGGTGCCTTCTTCTTGGTTAAGGTCATGGCTTTGGTCTCCCAAAAAAAATTTGAAATCTAATACCAAATAGGAACTAAACTCAAAATTTAAGGCTATAAGGATTTAATGGTTACTAAATTCAAAACTTGGGTAATGTACCATTATGAAACCAAGCCACCAAAGTGGTTTTTTCTATGGCCTTACTTGAACAGGATCTGTTAGGTTGTACAACTGTGACCTTGAGCTCTAAATGGTAACTGTGTGCAAGTACTCCATAAGCATTTAATGTTGTTTTTATTATTATTATTTATTTATTTTTGTTTCATAATCATAGCTTCAAACAAACTGTTTGTAAAAAAAAATATCTTCTGAAGTGTTGACTGAGGGTTTTGTAGATGAGTGGGCTAGTTCTGTTTCTTTTTTCATCGTGTTGGCATGAACTTATATCTTAGTTAGCAAGTTGCAAATTTTCTTGTAAGTAGGACTGAGCTTGAAGTTTGGGTGGTTATGGTATCTCTATAGCCAAAATAATATTCGAGGGTAGTAAAGTATAAAGGGTTACATATCATACTTTATCACAATAATGTGATGTACCCCCATTCATGATGGCATGACTAAAAAAATAGAAATCCATAGACACCTTATGAAGTGCTTTGTATTGGAGTCATTACAGGTGGCTGAATTTTCATGGAAGGATTGCAAAGATTCTACTTTTGTAGCCTTAGCTAGCAAGCTAAGAATGAATGATAAAGATCTTTAATCCAACTTGACTGTTGGAGCTGTAGCATTGGTCAAGTCAATGGGACATCTTCCCATTTTTATTGCATTCATACCCAAATTTTATTTCATACACCTTATTTGTAAATGCCTAATTTCTTCTCTCGATAGATTTTCATGCAGTGATCATTCTATTCCCTGGCATATTTGGTTTTGGTAAATAGAATTCCCTGTGCTATAATTTTATGTATGTATAAACGTACTGTAAGAGCAATTTTCTCTGTACTTCCTTCCCAATCTAGGAACTCAACCAAGATCTGCATTGCTGGACGACCTTCAAGATCAGGAAACTGTAATTCAAGAATGTATTAGGCAACTTGAAGGTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTACTTGTAGAAGCGCTTCAGGACCAAGTAACTTTCCTGCATCTTTTATTTTTCCTCCAATAATTTAAACCCATTGCAGGCCTCCTCTATATTGTAGTTGATTACTCTTTGGAAAATCACAGGAATCCAAGCTGGAACTAGTTCGCAATCAGTTGCAGGTAAGATTAACCACTTTGTATATTTTCTGTTTTTCAAGTAACTAACAAGAGTTTAGGTTTGGGATCAACTGTTGGCTTAAATTAGTTTTGGATGGGTCTGACATGCGCTTTATACCTTGAAACGTTTGAATATGGTATAGGATAATTGGATATGTCAAAACATTGAACTTTGGTACACCTAGAAGCATTTAAATCAGAGTTATAATCTTCTTTCATTGTAGACACATGGTGGAGGTGGACAGACACCCTTTGACTCTTGAGCAAATTAACACAATAATATACTAACTAATAGGGTACAATCCATGGTGGCCACCTACCTAAGAGTTAATTTTGTATGAGTTTTCTTAACACCCAAATGTTGTAGGGTTAGTCAGGTTGTCTCGTGAGATTAGTCAAAGTGCACGTAAACCAAATGTTGTAGGGTTAGTCAGGTCGTCTCGTGAGATTAGTCAAAGTGCACGTAAGCCAAATGTTGTAGGATTAGTCAGGTCATCTCGTGAGATTAGTCAAAGTGCACGTAAACCAAATGTTGTAGGGTTAGTCAGGTTGTCTCGTGAGATTAGTCAAAGTGCACGTAAGCTGGTTCGAATACTCGTAGATATTAAGAAAGAAAAAAACAATAATATACTTAAACAAGAAATGGGAGAAAAATCAGACTGAATGAACTTGTTTGATGTGCTAACTATGTGGGCACATTTGATTTTGACGTTCTTTCTAAGATATTTGATTTCTTTAGAAAGTTACAAATAATGGTGAACTTAAACCCATTGATCTTTGGAATCCGCTTCAAGATACAATAACTAGTTACCAATCTTTGGATGAAGGCCCTCGTAGTTTTTAGCCTTAAATTTTCTTTGTATCATCATTTAGATATTAGTGCTTGATCGATATTGTTAGTAAGGAAAAAGATACAGTGAAAATCATTCATATTTTTCATTAATGTAAATTCAAGTATGGAACTTATGCTTGATTGGCTTCTATGCTAGATTTCAATGCTTTAGTCTGCATCTAGATAAGAAAAAGATGAAGCTATTGTTTGCCTCGTATCCACTAACATCACTTCTGCTCGTTCATGTGTTATGAATGAGTTTCAATGTCAACATTACAGTTCAATCGAGTAGGAGTTCAATCATTTGGGAAATCCACTTTCAGCAACCAGTGAAACATTTTATGTCAATTTGCTCAGTCATTGGTAGCCTATTTTAGGCTGTAGTAATTAAATTGTACTGTAACTTTCTTTTTTATGTGAACGGATAAGAAATTGGGTCATGTCTAATAAAATTTTTAGACACTGTTTTGTTAGGAAAATTTCTGAGAACGCTTTCTATTATAAATGCATTATTAGATTAAACTTCAGTTGGAACCACCTGAATTAGAACTAATGAGGTGGCTTTTTGCAAAGGTAGTCTTGTAAATCGGAAAGGGTAACATACGTAAAAGATTATCATGGTCAAGAACTTAATTCAGGGGAGAGAGCACAGTTGATAGAGATGGACAGTCAGTATCTGATATATATTAAAAACATAGCAGTAAACATAAATTAAAACGAACAAATATAATTAAGTTCTAATTCAGAAGGTTCCCTGCCAGTCACATGGACGGAGATCTCATATTAAATATATTTTATATGCTTGGAATGCAAAATGATTAGTTATAGAGTTCTGTATTTTCTAACTTCAGTTTGCTTATGTAGATCGGAAATTATTGTTTATGAACCTGTAGGTGGCTCGATCTCAAATTGAGCTAGCAAGTAATGTTCGGAAAAGATTTACTTCGACAACGGTTCCTGGTCCTTCAGCTACTACTGTTGATCTTCTGACAGAGATGACCCATGCGACGGATTCTAAGTTATCTTCTGTTCAACAAAACATAATCTCTTCTCAGTCCCCTCTTATCCAGGCTATGGGGTCGTTTCCTGGTCCTAAAACCAGTGAAGAGGAAAACAAGAGAGCTGCTGCCGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCATCGGCACAGATGCTTACCTCTGTTCTTTCATCACTCGTTGCAGAAGAAGCTGCTTCCATGAATGGTGGCCTAAAATCATCTGGGTTCTCTTCATTGTCCCTATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCCATGCCTATTTCTGATGTCAGCAGTTCAGATGGCGCTGGCGCATCATTTGTTGCACCTATGCAACAACAAATGACGAGTATGCCACTTGCACAATCAGCAAATGGGCAACCTGTATCCCAGGCAAACCCGAGTCAAGCTTCATTTGCGCCACCACCTCCGCCAGTGCCACCATCTCTATCCTCAACTCCACCAGTGAATCAATATGCACAGTCTGGTGGATTAATGGGTGTATTACCATATAATTTCGGAGCATATTCTCTACCACCTCCACCTCCTTTGCCTCCACATATTGCGATGGGTTTGAGTAGGCCGACATCTCAGCCACCTCCGCAACAGCTGCAGCAGCCACAGCAGTCACAGCCAGCTTCATCAGGATTTTATCGACCACCAGGTATAGGCTTTTATGGGCAAGGCCAGCAGTCGACGCCACCCCCGGTCCCTAGGCAGTAAGTTCCCAGGTAGAATTTACTTGGGTCAAACTTTCACTTAAAAGGGTTAAATATCTTCAATGGTTTACATTAGCCATACACATTTCTACCTGCCAACTGAGTTCATTTCAGAATTTGTATTATCATGTAAATTAGTAGATTATTTTTTTTTTTTCGTTAGTTAATTTGTAGAAGGTTTAGTATATCTTCTCCGGCCAACAATTTTAAAGAGCATGTTGCAGCTGAGGTTCGTCTGTGCTGATGGAAAATTTAGGTGGCTACATTTAGGCTTTTCCAATGTGTTACTATAAAAGTCCGGAAGCTCGACGAATTCTCGACTACGTCAAAATTTTACTGTGGCTAGGTAAGCTTTTCTCCCATATGTTTGGAAGCTTGTTAGCGTACTGCCTAGAAAGATTTTTAGTTGACATGTTAGATTCAGCTTTGAAGACCTTGTTGCCCTTTAAAATCTGCATGGATAGAGTGGCCAACTACACTTATTTTGGATAGCAATAACAGGATGATACTGGTCTGTAATATAAATTTAGTGATAGGCCATGGAAATTATAAGTTAAAATACATCAGTGCCACTGTTTTGTAATCTGTACCCCTTGTTTTCTTATTCAGTAGAGAACTTTTATTTTACAATAAATTGTTCCTCAATCTTC

Coding sequence (CDS)

ATGACCCATGCGACGGATTCTAAGTTATCTTCTGTTCAACAAAACATAATCTCTTCTCAGTCCCCTCTTATCCAGGCTATGGGGTCGTTTCCTGGTCCTAAAACCAGTGAAGAGGAAAACAAGAGAGCTGCTGCCGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCATCGGCACAGATGCTTACCTCTGTTCTTTCATCACTCGTTGCAGAAGAAGCTGCTTCCATGAATGGTGGCCTAAAATCATCTGGGTTCTCTTCATTGTCCCTATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCCATGCCTATTTCTGATGTCAGCAGTTCAGATGGCGCTGGCGCATCATTTGTTGCACCTATGCAACAACAAATGACGAGTATGCCACTTGCACAATCAGCAAATGGGCAACCTGTATCCCAGGCAAACCCGAGTCAAGCTTCATTTGCGCCACCACCTCCGCCAGTGCCACCATCTCTATCCTCAACTCCACCAGTGAATCAATATGCACAGTCTGGTGGATTAATGGGTGTATTACCATATAATTTCGGAGCATATTCTCTACCACCTCCACCTCCTTTGCCTCCACATATTGCGATGGGTTTGAGTAGGCCGACATCTCAGCCACCTCCGCAACAGCTGCAGCAGCCACAGCAGTCACAGCCAGCTTCATCAGGATTTTATCGACCACCAGGTATAGGCTTTTATGGGCAAGGCCAGCAGTCGACGCCACCCCCGGTCCCTAGGCAGTAA

Protein sequence

MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFVAPMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGVLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQGQQSTPPPVPRQ

Homology

[Close]

BLAST of Cucsat.G13186.T13 vs. NCBI nr
Match: XP_004136608.1 (regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >XP_031739391.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >KAE8651160.1 hypothetical protein Csa_001803 [Cucumis sativus])

HSP 1 Score: 461 bits (1187), Expect = 1.73e-158
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 309 MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 368

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV
Sbjct: 369 MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 428

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV
Sbjct: 429 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 488

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ
Sbjct: 489 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 548

Query: 241 GQQSTPPPVPRQ 252
           GQQSTPPPVPRQ
Sbjct: 549 GQQSTPPPVPRQ 560

[Close]

BLAST of Cucsat.G13186.T13 vs. NCBI nr
Match: KAA0053932.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo var. makuwa] >TYK25472.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo var. makuwa])

HSP 1 Score: 442 bits (1136), Expect = 2.57e-152
Identity = 242/252 (96.03%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH TD+KLSSVQQNIISSQ PL+QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 202 MTHVTDTKLSSVQQNIISSQPPLVQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 261

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNGGLKSSGFSSL  FSPEKRQKLEKPMPISDVSSSDG GASFV
Sbjct: 262 MLTSVLSSLVAEEAASMNGGLKSSGFSSL--FSPEKRQKLEKPMPISDVSSSDGVGASFV 321

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGL+GV
Sbjct: 322 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLIGV 381

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQ PQQSQP SSGFYRPPGIGFYGQ
Sbjct: 382 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQPPQQSQPTSSGFYRPPGIGFYGQ 441

Query: 241 GQQSTPPPVPRQ 252
           GQQSTPPPVPRQ
Sbjct: 442 GQQSTPPPVPRQ 451

[Close]

BLAST of Cucsat.G13186.T13 vs. NCBI nr
Match: XP_008443180.1 (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo])

HSP 1 Score: 442 bits (1136), Expect = 8.66e-151
Identity = 242/252 (96.03%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH TD+KLSSVQQNIISSQ PL+QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 309 MTHVTDTKLSSVQQNIISSQPPLVQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 368

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNGGLKSSGFSSL  FSPEKRQKLEKPMPISDVSSSDG GASFV
Sbjct: 369 MLTSVLSSLVAEEAASMNGGLKSSGFSSL--FSPEKRQKLEKPMPISDVSSSDGVGASFV 428

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGL+GV
Sbjct: 429 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLIGV 488

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQ PQQSQP SSGFYRPPGIGFYGQ
Sbjct: 489 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQPPQQSQPTSSGFYRPPGIGFYGQ 548

Query: 241 GQQSTPPPVPRQ 252
           GQQSTPPPVPRQ
Sbjct: 549 GQQSTPPPVPRQ 558

[Close]

BLAST of Cucsat.G13186.T13 vs. NCBI nr
Match: XP_038904543.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida])

HSP 1 Score: 428 bits (1101), Expect = 1.90e-145
Identity = 234/253 (92.49%), Postives = 240/253 (94.86%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH TD+KLSSVQQNIISSQSPL+QAM SFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 309 MTHVTDTKLSSVQQNIISSQSPLVQAMASFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 368

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNG LKSSGFSSLS+FSPEKRQKLEKPMPISDVSSSDG  ASFV
Sbjct: 369 MLTSVLSSLVAEEAASMNGSLKSSGFSSLSIFSPEKRQKLEKPMPISDVSSSDGVSASFV 428

Query: 121 APMQQ-QMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMG 180
            PMQQ Q+TS+PLAQS NGQPVSQANPSQASFAPPPPP PPSLSSTPPVNQY Q GGLMG
Sbjct: 429 TPMQQPQLTSLPLAQSVNGQPVSQANPSQASFAPPPPPAPPSLSSTPPVNQYVQPGGLMG 488

Query: 181 VLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYG 240
           VLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPP QQLQQPQQSQP S+GFYRPPGIGFYG
Sbjct: 489 VLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPQQQLQQPQQSQPTSAGFYRPPGIGFYG 548

Query: 241 QGQQSTPPPVPRQ 252
           QGQQSTPPPVPRQ
Sbjct: 549 QGQQSTPPPVPRQ 561

[Close]

BLAST of Cucsat.G13186.T13 vs. NCBI nr
Match: XP_022152017.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia] >XP_022152018.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia])

HSP 1 Score: 382 bits (982), Expect = 1.67e-127
Identity = 212/252 (84.13%), Postives = 223/252 (88.49%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH  D+KL+SVQ N ISSQSPL+QAM SF GPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 306 MTHVADTKLTSVQSNTISSQSPLVQAMVSFAGPKTSEEENKRAAAAAVAAKLAASTSSAQ 365

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNG LKSSGF+SL +FSPEKRQKLEKPMPISDV+SSD  G+   
Sbjct: 366 MLTSVLSSLVAEEAASMNGSLKSSGFASLPIFSPEKRQKLEKPMPISDVNSSDSIGSFVT 425

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           +  QQQ+TS+ LAQSAN QPVSQANPSQASF PPPPP PPSLSST PVN Y QSG LMGV
Sbjct: 426 SMQQQQLTSVALAQSANVQPVSQANPSQASFTPPPPPAPPSLSSTTPVNPYPQSGALMGV 485

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPY FGAYSLPPPPPLPPHIAMGL+RPTSQPP QQ QQPQQSQP S GFYRPPGIGFYGQ
Sbjct: 486 LPYGFGAYSLPPPPPLPPHIAMGLTRPTSQPPQQQPQQPQQSQPTSGGFYRPPGIGFYGQ 545

Query: 241 GQQSTPPPVPRQ 252
            QQSTPPPVPRQ
Sbjct: 546 SQQSTPPPVPRQ 557

[Close]

BLAST of Cucsat.G13186.T13 vs. ExPASy TrEMBL
Match: A0A0A0LH72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815990 PE=4 SV=1)

HSP 1 Score: 461 bits (1187), Expect = 1.12e-160
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 180 MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 239

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV
Sbjct: 240 MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 299

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV
Sbjct: 300 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 359

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ
Sbjct: 360 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 419

Query: 241 GQQSTPPPVPRQ 252
           GQQSTPPPVPRQ
Sbjct: 420 GQQSTPPPVPRQ 431

[Close]

BLAST of Cucsat.G13186.T13 vs. ExPASy TrEMBL
Match: A0A5D3DPK3 (Regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006180 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 1.24e-152
Identity = 242/252 (96.03%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH TD+KLSSVQQNIISSQ PL+QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 202 MTHVTDTKLSSVQQNIISSQPPLVQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 261

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNGGLKSSGFSSL  FSPEKRQKLEKPMPISDVSSSDG GASFV
Sbjct: 262 MLTSVLSSLVAEEAASMNGGLKSSGFSSL--FSPEKRQKLEKPMPISDVSSSDGVGASFV 321

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGL+GV
Sbjct: 322 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLIGV 381

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQ PQQSQP SSGFYRPPGIGFYGQ
Sbjct: 382 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQPPQQSQPTSSGFYRPPGIGFYGQ 441

Query: 241 GQQSTPPPVPRQ 252
           GQQSTPPPVPRQ
Sbjct: 442 GQQSTPPPVPRQ 451

[Close]

BLAST of Cucsat.G13186.T13 vs. ExPASy TrEMBL
Match: A0A1S3B7H0 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo OX=3656 GN=LOC103486842 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 4.19e-151
Identity = 242/252 (96.03%), Postives = 245/252 (97.22%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH TD+KLSSVQQNIISSQ PL+QAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 309 MTHVTDTKLSSVQQNIISSQPPLVQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 368

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNGGLKSSGFSSL  FSPEKRQKLEKPMPISDVSSSDG GASFV
Sbjct: 369 MLTSVLSSLVAEEAASMNGGLKSSGFSSL--FSPEKRQKLEKPMPISDVSSSDGVGASFV 428

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGL+GV
Sbjct: 429 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLIGV 488

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQ PQQSQP SSGFYRPPGIGFYGQ
Sbjct: 489 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQPPQQSQPTSSGFYRPPGIGFYGQ 548

Query: 241 GQQSTPPPVPRQ 252
           GQQSTPPPVPRQ
Sbjct: 549 GQQSTPPPVPRQ 558

[Close]

BLAST of Cucsat.G13186.T13 vs. ExPASy TrEMBL
Match: A0A6J1DF20 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111019832 PE=4 SV=1)

HSP 1 Score: 382 bits (982), Expect = 8.07e-128
Identity = 212/252 (84.13%), Postives = 223/252 (88.49%), Query Frame = 0


Query: 1   MTHATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQ 60
           MTH  D+KL+SVQ N ISSQSPL+QAM SF GPKTSEEENKRAAAAAVAAKLAASTSSAQ
Sbjct: 306 MTHVADTKLTSVQSNTISSQSPLVQAMVSFAGPKTSEEENKRAAAAAVAAKLAASTSSAQ 365

Query: 61  MLTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFV 120
           MLTSVLSSLVAEEAASMNG LKSSGF+SL +FSPEKRQKLEKPMPISDV+SSD  G+   
Sbjct: 366 MLTSVLSSLVAEEAASMNGSLKSSGFASLPIFSPEKRQKLEKPMPISDVNSSDSIGSFVT 425

Query: 121 APMQQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLMGV 180
           +  QQQ+TS+ LAQSAN QPVSQANPSQASF PPPPP PPSLSST PVN Y QSG LMGV
Sbjct: 426 SMQQQQLTSVALAQSANVQPVSQANPSQASFTPPPPPAPPSLSSTTPVNPYPQSGALMGV 485

Query: 181 LPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFYGQ 240
           LPY FGAYSLPPPPPLPPHIAMGL+RPTSQPP QQ QQPQQSQP S GFYRPPGIGFYGQ
Sbjct: 486 LPYGFGAYSLPPPPPLPPHIAMGLTRPTSQPPQQQPQQPQQSQPTSGGFYRPPGIGFYGQ 545

Query: 241 GQQSTPPPVPRQ 252
            QQSTPPPVPRQ
Sbjct: 546 SQQSTPPPVPRQ 557

[Close]

BLAST of Cucsat.G13186.T13 vs. ExPASy TrEMBL
Match: A0A6J1F7Z5 (actin cytoskeleton-regulatory complex protein pan-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441698 PE=4 SV=1)

HSP 1 Score: 374 bits (961), Expect = 5.20e-126
Identity = 212/254 (83.46%), Postives = 224/254 (88.19%), Query Frame = 0


Query: 2   THATDSKLSSVQQNIISSQSPLIQAMGSFPGPKTSEEENKRAAAAAVAAKLAASTSSAQM 61
           TH  D+KL SVQQN I+S    +QAM SF GPKTSE+E KRAAAAAVAAKLAASTSSAQM
Sbjct: 208 THVIDTKLPSVQQNAIASP---VQAMASFAGPKTSEDETKRAAAAAVAAKLAASTSSAQM 267

Query: 62  LTSVLSSLVAEEAASMNGGLKSSGFSSLSLFSPEKRQKLEKPMPISDVSSSDGAGASFVA 121
           LTSVLSSLVAEEAASMNG LKSSGF+SLS+F  EKRQKLEKPMPISDVS SDG GASF+ 
Sbjct: 268 LTSVLSSLVAEEAASMNGSLKSSGFASLSIFPSEKRQKLEKPMPISDVSGSDGIGASFIT 327

Query: 122 PMQQQ---MTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQYAQSGGLM 181
           PMQQQ   +TS+PLAQSANGQPVSQANP QASFAPPPPP PPSLSSTPPVNQYAQSGGLM
Sbjct: 328 PMQQQQQQLTSVPLAQSANGQPVSQANPCQASFAPPPPPAPPSLSSTPPVNQYAQSGGLM 387

Query: 182 GVLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQQPQQSQPASSGFYRPPGIGFY 241
           GV PY+FGAYSLPPPPPLPPHIAMGLSRP SQPP  Q QQPQ + P S+GFYRPPGIGFY
Sbjct: 388 GVSPYSFGAYSLPPPPPLPPHIAMGLSRPMSQPP--QQQQPQLTLPTSAGFYRPPGIGFY 447

Query: 242 GQGQQSTPPPVPRQ 252
           GQGQQSTPPPVPRQ
Sbjct: 448 GQGQQSTPPPVPRQ 456

The following BLAST results are available for this feature:

BLAST of Cucsat.G13186.T13 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G13186.T13 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136608.1	1.73e-158	100.00	regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >X...	[more]
KAA0053932.1	2.57e-152	96.03	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo v...	[more]
XP_008443180.1	8.66e-151	96.03	PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc...	[more]
XP_038904543.1	1.90e-145	92.49	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hisp...	[more]
XP_022152017.1	1.67e-127	84.13	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica char...	[more]

BLAST of Cucsat.G13186.T13 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH72	1.12e-160	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815990 PE=4 SV=1	[more]
A0A5D3DPK3	1.24e-152	96.03	Regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo...	[more]
A0A1S3B7H0	4.19e-151	96.03	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo...	[more]
A0A6J1DF20	8.07e-128	84.13	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica ch...	[more]
A0A6J1F7Z5	5.20e-126	83.46	actin cytoskeleton-regulatory complex protein pan-1-like isoform X2 OS=Cucurbita...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..44
None	No IPR available	PANTHER	PTHR12460:SF21	RNA POLYMERASE II-BINDING DOMAIN PROTEIN	coord: 2..252
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 2..252

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13186	Cucsat.G13186	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13186.T13.E1	Cucsat.G13186.T13.E1	exon
Cucsat.G13186.T13.E2	Cucsat.G13186.T13.E2	exon
Cucsat.G13186.T13.E3	Cucsat.G13186.T13.E3	exon
Cucsat.G13186.T13.E4	Cucsat.G13186.T13.E4	exon
Cucsat.G13186.T13.E5	Cucsat.G13186.T13.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13186.T13.C1	Cucsat.G13186.T13.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13186.T13	Cucsat.G13186.T13-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031124	mRNA 3'-end processing
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0016591	RNA polymerase II, holoenzyme
molecular_function	GO:0000993	RNA polymerase II complex binding