CsaV3_5G008480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G008480
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 5164483 .. 5164677 (+)
RNA-Seq ExpressionCsaV3_5G008480
SyntenyCsaV3_5G008480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAAGACAAGAGAGAGTTACACTTGACTACGATCACCTTAAAAAATACAGAAAAGTTGAAGAGCAAAAACAACACAAGAGAATTACAAAAGAAGCCAACAAAATTAAAGGCAGAAAAGAATAAGGAACCTCACTCACCTGATGATGGAAGGTACAAACGGCAGCCAAAAATAGGAAGGGAAGGGACAAATACAA

mRNA sequence

AGACAAGAGAGAGTTACACTTGACTACGATCACCTTAAAAAATACAGAAAAGTTGAAGAGCAAAAACAACACAAGAGAATTACAAAAGAAGCCAACAAAATTAAAGGCAGAAAAGAATA

Coding sequence (CDS)

AGACAAGAGAGAGTTACACTTGACTACGATCACCTTAAAAAATACAGAAAAGTTGAAGAGCAAAAACAACACAAGAGAATTACAAAAGAAGCCAACAAAATTAAAGGCAGAAAAGAATA

Protein sequence

RQERVTLDYDHLKKYRKVEEQKQHKRITKEANKIKGRKEX
Homology
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BLAST of CsaV3_5G008480 vs. NCBI nr
Match: KAE8648001.1 (hypothetical protein Csa_023960, partial [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  RQERVTLDYDHLKKYRKVEEQKQHKRITKEANKIKGRKE 40
          RQERVTLDYDHLKKYRKVEEQKQHKRITKEANKIKGRKE
Sbjct: 1  RQERVTLDYDHLKKYRKVEEQKQHKRITKEANKIKGRKE 39

The following BLAST results are available for this feature:
BLAST of CsaV3_5G008480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648001.13.4e-10100.00hypothetical protein Csa_023960, partial [Cucumis sativus][more]
BLAST of CsaV3_5G008480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G008480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G008480 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G008480.1CsaV3_5G008480.1mRNA