CsaV3_3G001230 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGGCTAAAATTTGCAAGGCAGATCCCGCGTAACAAACAAGCACCGATAATAAAAAGGCACTTCAAGAACAAACCTTCACTCTACTCTATCGCTATTTGCTGTTCGCTACCACCCACCGCCTTCTCCAAACAAACAAAATTGCTCGATTTTAGGGATCTGAAAATTCGCCATGAATCGCCACAACGATCCCAATCCCTTCGATGAAGAAGGGGTCAATCCATTTTCGGTAATCTTTTCTTTTTTCCATTTTCTCTTTCTCTTGTGGCTTAATCTCACTTTTCTTCAGATCTGTGCATCTCGTTACTTTTTTTTCGCATTTTCGTTTCTTGTTTTATACGATTTATATTCGGCGAGTGTTTCGATCGGGTTTTTTTTGTTTTCTATTTTTGAGTTTGAGGGGGTGAGAGTGAGGTTGTTGGATTGTTCTTTAAGCTGGATCTAAGGGAAATTTTGCTAAATTTGGTGGAGTAGGGTTGATTTTATAGCCGCTGAGAAATATCTTTGGAGAATTATGGGAGTGATGTGAAGTAGTTGAAGGATGAAGTAGGTATTCAAATTTGGAATTTGAATTATACTAAACGTAGACTTAATGGTACTAGTTGTTGTTGTTTTGGAGTACTTAGGAAGATGATTTCATATCATCATTTGGGATTGAAAATGAGCGTCATTACAATCTGTGTGGAATTGTTATTTGGATATGCATAAATTGAAAGCAGCCATTTGTTGTTTATTGACAATGCTCTTCTTGTTGGCTGTAGCTTATTATTTATCTGTAACATCTGATATTTGAAACTATAAGAAGTAAGCAAATCAAGTTTGTTCTTAAGAGGATGGAAATGGTAACAGTACGGCTTGTCATTACTAATTTCAACATTTGCAGAAAGGTGGTGGTGCTCCTGGATCAAAGTTTCGAATCCCGCAAATGGTATCAGAAACTCTGGGCTTTGGACAGAAGCATGATGCTACAGTGGATATTCCACTGGATACGATGAATGTAATGATTATCATACTCTGTACTTTCTTGCTTGGATTCTTTTTACTTTGAAGAAGTAATGTTTTATTTGGTTCATGTAGGATCCGAAGAAGAAGGAGAGAGAGCTTGCTGCCTGGGAAGCTGAACTTAGTAGGAAAGAAAAGGTGATTTGTTTGACATCAATGATTTTGTGTCTGTGTAAGACTGATTGATACTACCTACACCTACAGCTGTCCATAACTCGACTATATGTGAATACATTTTGGTAGTTGTTCACCCGCTCATTTGTTTTATGCAAGTTGATTTTGTTTTTTTCGATTCTATTCTGTATTCTAATTTTAGACGTTAGTTTTTTACTATTTGATTTATATCTATATATATTTATATTATACATACACACACTTTATCATAATTCATAACCCTCATCCAACCAACCAACAAAAAAGGTATTTGTTATTGTGGAGTGGTTAACTAACTGTTCTTATGTCTCATTTTTACCAGGAAATCAAAAAAAGGGAAGAAGCTGTTTCTAAAGGTTGTTGATATTGCTACAAGAAATGACATAGAATGTTGTTTGCTCTTGTTTTTATGAAGCTATTGACAGTCTATAACCTTTTCAATGTTGCACAGCTGGTGTCCCTGCTGATGATAGAAACTGGCCTCCATTTTTCCCTATTATTCATCATGATATAGCTAATGAAATACCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTTGCTAGCTGGCTAGGTATGCAAAGTTAATTGTCTCAATTCCTTTTTAAATGTTAAAAAGAACAAAGAAAATTCACTTATGGTGCGTTGTATTTGAACCCCCCAAAATATTTTTAATTGTATAAACTTTATACAAATATTTGAGTTAAGCATTTTGATAGAGTTTCTCTCCTATGTGTGTATAATGCTCTTCACCTTACTTGGGTTCTTGCCTCACCTACCATATCATCCTTGACATATTCATTTCTAAGCATGTATTATGCAACATATTTATTTTTAACTCTACATTTTATCACAGGTATTGTTTTGTGCTTAGTCTTCAATGTTATTGCAATAACTGTCTGCTGGATTAGAGGCGGGGGTAATTACTTCACTCTCAATTTTCTTTATTTGTGCAATGGGTTACCTTAAGCTACTACAAATGGATTTGTTGACTGTTGACACCACTTGGCAGGAGTCAAAATTTTTTTCCTTGCTGTAATATATGCGATACTTGGGATTCCACTTTCCTATGTGCTATGGTACAGGCCTCTATACCGAGCTATGAGGTGAGATTGGATAATCTTTATATTTCATTCAAATGTGTTAAGAGGAATTCCTTTACTGGGTTTCTTCCCTCGGCCTCCTGCTTTTGTCTTTGCTGCTCTCTTGTTATATTCTTGTTTAATAATTTCCTAAGATGTTATTGTTATATTTGCTCATTTTGTATGCTTTAAACTTCTGATCGCTGACACTATTTTGTATTTCTCATTTTATTCAACTTTGCAGGACAGATAGTGCTTTGAAATTTGGTTGGTTCTTCATGTTTTACTTGGTATGAACTCTAAATACTATTAATCTTTTTCCCTCAAAATAAAGATTTTTTACCCCTTATTTTTATGTAGTAGTTAATTAATTGAGTTTCTACCACCGTACAGCTTCACATTGCATTTTGCATTTTTGCTGCCATTGCGCCTCCTGTTGTGTTTCACGGACAGTCATTGACGTAAGTTTATGGCTTTCATTTCAGCCTTTTAATATGCTTTGCCTTCAAAATGTTCATGAATGAATGAATGAAGTTTCATTCTTTCGCCTATATAATAGCTGCTCCTATTTTTATCATTGTTGCTTGTGGCTTTCTCCATGCTGCATGGATTACTGAATATATCCTCCAAACGTTTTCAGGGGTATCTTAGCAGCAATCGACGTCTTCTCTGAACATGTCTTGGTTGGGGTAAGTTTCAAATAGACAAAAAAAAAAAACAACTATAAACCTTGCATACCCTCTCTCTTTATTTATTTATAAAGAGGAATGGAGGATCCATTTTAAAATGGCAAACATACGAATTGGACTGTCTTTGTCGCCTCATTATTCATCTTTTTAGGTTCTGTTTCATGTTTAAAATTGAGTTTAAACTATTTAACTTTGTCTTGGCTCTCGTGCTTGTCATTCTAGGTTTCTTAACAATATCAATAGTGTGGTTTTGTACTGGTCGCTGCTGATTTTACACCATTAGACCTATGAGCGAACCACGAAAATGTTTGAACATGCTTCTGGTGGTTATTTTTAGGACTGTCACAGAATAACAATTGGTTACTTTTTCGTTAGTATTACATGATTGAGTGACATGATTATTTTGAACTGTTGTAAGTTTACCTGTATGAAACGTTGAATACAAGCATAAATATAATTGAAGATCAGATTCTCCCTATTATTTGTTGGTGCTTCCTGCTATTCCGAGTTTGACTAATAATTGGGATTTTCTTTGCACAGATATTTTACCTTATTGGTTTTGGCTTTTTTTGCTTGGAATCACTTCTTAGTCTGTGGGTCCTTCAGGTAAGACATGGTTATCTTTATCCTGATTTGCTTATTATTACTTTTTTTTTCTTGGCCCATCTGATTACCATTAAATTTTCTGTTTTCAAAAATCAAACTTATAAATACTACTTCCATGTTCTAGTTATAGTTCTCTTGATTTATCACCAACATTTTAAAAGCATTTAGAAAAAGAATAAAAAAACTTTTAAAAAAAACTTAGTTTGTTTTTGATTGAGAGTTTAGAATGGACTGTGTTCAGAGAAAGTGAGACGCAAGAAACCCATCTAATTTTTACCTTCATTTGGTAACAATGTTTTTTGTTTTTAATATTTATGTTTGTTCTCTTACATTCAGTCATTTTTTATAACCTATGGCTCCATTTGGTAACCACTTTTTTTTTTTTGTTTCTTTTTCTTTTGAGTTTCTTGCTCTTAAATTTCTTGCATTGTTAAATATTTTTTTTATCAATATTTTCAGCCAAATTTTGAGTACTAAACAAAGCAGTTTTTAAAAGCTTGTTTTTGTTTTAAATTTAACCAAAGTGAGTAGGAAAAAAAAAACTAATAAAATTTGACAAAGTAAATAGAAAAAAACTCGTATGTGAGATTTAATTTTCAAAAATAAAAACCCAAAAATAAAGTTAACAAACTTTAGAGTTGGCTTGGTAGAATTTGTCAATCAAATTTGACAATGATTAGGTGCATTTTTTAAAAAAGTATCCAAAGTTTTTTTTTTTTGGGTCTTGCCCTTGCTTTTATCGTTAACATGCAAAATTTTCGTTATATATGTGTGTGTATATATTTATATTCTAACCACTCATCTTCCTATTATTTTTCCTCTTGATTTATGTAATTTTTTTTTTGCAGAAAATCTATTTGTATTTTAGGGGAAACAAATGAGTGAAGAGGAGATTATTAAGCAACGGTTGTGATGTTGCAGCGGAAAAATCTTTGGTTTGTCATTTCTTGTGATGGGGTTTATAGGGTTAGTATGGCTATTGTATTTTAGGATGTTTTTTTTTTTTTAATGAGCCAAGAGAAAGATGTGGATTCTAATGTTGATGATTGATATTATTGATGTTGATATAAATATATAATTTTGTGCG ATGAATCGCCACAACGATCCCAATCCCTTCGATGAAGAAGGGGTCAATCCATTTTCGAAAGGTGGTGGTGCTCCTGGATCAAAGTTTCGAATCCCGCAAATGGTATCAGAAACTCTGGGCTTTGGACAGAAGCATGATGCTACAGTGGATATTCCACTGGATACGATGAATGATCCGAAGAAGAAGGAGAGAGAGCTTGCTGCCTGGGAAGCTGAACTTAGTAGGAAAGAAAAGGAAATCAAAAAAAGGGAAGAAGCTGTTTCTAAAGCTGGTGTCCCTGCTGATGATAGAAACTGGCCTCCATTTTTCCCTATTATTCATCATGATATAGCTAATGAAATACCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTTGCTAGCTGGCTAGGTATTGTTTTGTGCTTAGTCTTCAATGTTATTGCAATAACTGTCTGCTGGATTAGAGGCGGGGGAGTCAAAATTTTTTTCCTTGCTGTAATATATGCGATACTTGGGATTCCACTTTCCTATGTGCTATGGTACAGGCCTCTATACCGAGCTATGAGGACAGATAGTGCTTTGAAATTTGGTTGGTTCTTCATGTTTTACTTGCTTCACATTGCATTTTGCATTTTTGCTGCCATTGCGCCTCCTGTTGTGTTTCACGGACAGTCATTGACGGGTATCTTAGCAGCAATCGACGTCTTCTCTGAACATGTCTTGGTTGGGATATTTTACCTTATTGGTTTTGGCTTTTTTTGCTTGGAATCACTTCTTAGTCTGTGGGTCCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAATGA ATGAATCGCCACAACGATCCCAATCCCTTCGATGAAGAAGGGGTCAATCCATTTTCGAAAGGTGGTGGTGCTCCTGGATCAAAGTTTCGAATCCCGCAAATGGTATCAGAAACTCTGGGCTTTGGACAGAAGCATGATGCTACAGTGGATATTCCACTGGATACGATGAATGATCCGAAGAAGAAGGAGAGAGAGCTTGCTGCCTGGGAAGCTGAACTTAGTAGGAAAGAAAAGGAAATCAAAAAAAGGGAAGAAGCTGTTTCTAAAGCTGGTGTCCCTGCTGATGATAGAAACTGGCCTCCATTTTTCCCTATTATTCATCATGATATAGCTAATGAAATACCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTTGCTAGCTGGCTAGGTATTGTTTTGTGCTTAGTCTTCAATGTTATTGCAATAACTGTCTGCTGGATTAGAGGCGGGGGAGTCAAAATTTTTTTCCTTGCTGTAATATATGCGATACTTGGGATTCCACTTTCCTATGTGCTATGGTACAGGCCTCTATACCGAGCTATGAGGACAGATAGTGCTTTGAAATTTGGTTGGTTCTTCATGTTTTACTTGCTTCACATTGCATTTTGCATTTTTGCTGCCATTGCGCCTCCTGTTGTGTTTCACGGACAGTCATTGACGGGTATCTTAGCAGCAATCGACGTCTTCTCTGAACATGTCTTGGTTGGGATATTTTACCTTATTGGTTTTGGCTTTTTTTGCTTGGAATCACTTCTTAGTCTGTGGGTCCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAATGA MNRHNDPNPFDEEGVNPFSKGGGAPGSKFRIPQMVSETLGFGQKHDATVDIPLDTMNDPKKKERELAAWEAELSRKEKEIKKREEAVSKAGVPADDRNWPPFFPIIHHDIANEIPVHAQKLQYLAFASWLGIVLCLVFNVIAITVCWIRGGGVKIFFLAVIYAILGIPLSYVLWYRPLYRAMRTDSALKFGWFFMFYLLHIAFCIFAAIAPPVVFHGQSLTGILAAIDVFSEHVLVGIFYLIGFGFFCLESLLSLWVLQKIYLYFRGNK* Homology
BLAST of CsaV3_3G001230 vs. NCBI nr
Match: XP_004146111.1 (secretory carrier-associated membrane protein 4 [Cucumis sativus] >KGN55709.1 hypothetical protein Csa_010042 [Cucumis sativus]) HSP 1 Score: 540.0 bits (1390), Expect = 1.1e-149 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. NCBI nr
Match: XP_038892201.1 (secretory carrier-associated membrane protein 4 [Benincasa hispida]) HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147 Identity = 265/269 (98.51%), Postives = 268/269 (99.63%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. NCBI nr
Match: XP_008448620.1 (PREDICTED: secretory carrier-associated membrane protein 4 [Cucumis melo]) HSP 1 Score: 531.6 bits (1368), Expect = 4.0e-147 Identity = 264/269 (98.14%), Postives = 267/269 (99.26%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. NCBI nr
Match: XP_023540505.1 (secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 517.3 bits (1331), Expect = 7.9e-143 Identity = 259/269 (96.28%), Postives = 262/269 (97.40%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. NCBI nr
Match: KAG6596705.1 (Secretory carrier-associated membrane protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028239.1 Secretory carrier-associated membrane protein 4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 515.4 bits (1326), Expect = 3.0e-142 Identity = 258/269 (95.91%), Postives = 261/269 (97.03%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy Swiss-Prot
Match: Q9C6X2 (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=SCAMP4 PE=1 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 4.7e-114 Identity = 208/271 (76.75%), Postives = 230/271 (84.87%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy Swiss-Prot
Match: Q0JAI9 (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP6 PE=2 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 4.9e-103 Identity = 185/272 (68.01%), Postives = 221/272 (81.25%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy Swiss-Prot
Match: Q6Z8F5 (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP5 PE=2 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 2.3e-100 Identity = 183/281 (65.12%), Postives = 218/281 (77.58%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy Swiss-Prot
Match: Q9ZTX0 (Secretory carrier-associated membrane protein OS=Pisum sativum OX=3888 GN=PSAM2 PE=2 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 1.3e-92 Identity = 163/263 (61.98%), Postives = 210/263 (79.85%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy Swiss-Prot
Match: Q7F613 (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP2 PE=2 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 3.6e-90 Identity = 162/263 (61.60%), Postives = 207/263 (78.71%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy TrEMBL
Match: A0A0A0L3U1 (Secretory carrier-associated membrane protein OS=Cucumis sativus OX=3659 GN=Csa_3G006700 PE=3 SV=1) HSP 1 Score: 540.0 bits (1390), Expect = 5.5e-150 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy TrEMBL
Match: A0A1S3BK39 (Secretory carrier-associated membrane protein OS=Cucumis melo OX=3656 GN=LOC103490740 PE=3 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 2.0e-147 Identity = 264/269 (98.14%), Postives = 267/269 (99.26%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy TrEMBL
Match: A0A6J1FWN7 (Secretory carrier-associated membrane protein OS=Cucurbita moschata OX=3662 GN=LOC111448097 PE=3 SV=1) HSP 1 Score: 514.6 bits (1324), Expect = 2.5e-142 Identity = 258/269 (95.91%), Postives = 261/269 (97.03%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy TrEMBL
Match: A0A6J1KU50 (Secretory carrier-associated membrane protein OS=Cucurbita maxima OX=3661 GN=LOC111498686 PE=3 SV=1) HSP 1 Score: 513.1 bits (1320), Expect = 7.2e-142 Identity = 257/269 (95.54%), Postives = 260/269 (96.65%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. ExPASy TrEMBL
Match: A0A6J1CVZ9 (Secretory carrier-associated membrane protein OS=Momordica charantia OX=3673 GN=LOC111014801 PE=3 SV=1) HSP 1 Score: 499.6 bits (1285), Expect = 8.3e-138 Identity = 249/271 (91.88%), Postives = 259/271 (95.57%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. TAIR 10
Match: AT1G32050.1 (SCAMP family protein ) HSP 1 Score: 412.1 bits (1058), Expect = 3.3e-115 Identity = 208/271 (76.75%), Postives = 230/271 (84.87%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. TAIR 10
Match: AT1G61250.1 (secretory carrier 3 ) HSP 1 Score: 331.6 bits (849), Expect = 5.7e-91 Identity = 166/272 (61.03%), Postives = 212/272 (77.94%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. TAIR 10
Match: AT2G20840.1 (Secretory carrier membrane protein (SCAMP) family protein ) HSP 1 Score: 326.2 bits (835), Expect = 2.4e-89 Identity = 155/268 (57.84%), Postives = 213/268 (79.48%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. TAIR 10
Match: AT1G61250.2 (secretory carrier 3 ) HSP 1 Score: 316.6 bits (810), Expect = 1.9e-86 Identity = 161/263 (61.22%), Postives = 203/263 (77.19%), Query Frame = 0
BLAST of CsaV3_3G001230 vs. TAIR 10
Match: AT1G11180.1 (Secretory carrier membrane protein (SCAMP) family protein ) HSP 1 Score: 309.3 bits (791), Expect = 3.0e-84 Identity = 158/274 (57.66%), Postives = 205/274 (74.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|