Tan0019447.4 (mRNA) Snake gourd v1

Overview


Name	Tan0019447.4
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase
Location	LG11: 3323929 .. 3328875 (+)
Sequence length	1881
RNA-Seq Expression	Tan0019447.4
Synteny	Tan0019447.4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCCTTTATTCAACTATTCTCTTTGTCCCCGGGATCCTTTTTGGTGATGGGCATCCTGATGATCGCGCCAAATTTTGATTGTCCTGTATTGGGTCTCTTAATTGTTTCATGATTTGTATGAATTCGTGGTCCGATCGTCTATTTGTTGAGTTTTTTCTTATGGGATTGTCGTATATTTTGAATAGTTTTTCTCTTGTTCGATACCCCTTATTCTTCACATTGGATGAGTTATGTATGTCCTGGATGATGATGACCAGCTTGGTTTGCTATTGATGTTGTATTCGTATCTTGTTTCCTCATTATCGAAGGAAAGAATCCGTGTTTTCAGAGGTGGCCCAGAAAAAAAAATCTCAATTTGGTGCGATAAGCGGGTAATTTTGACCGAAGATTATGGCATTTGATTAACCCTTGTACTTATTTTTGGCTGGTTCAACAATTTTTTCTTTCATTGTTGTGATTATTGTGGTTTCGGATTGCTACCGACAGATTCATGTTCCTTGAAATAATGCCGATTGTTGGTTTAATATATGATCTTAGTAGGATTTTTTATTTGACTTGCTTTCTTGGTGATCACATTGGTATTTATGCATCACAGTTACTTTGAGGAGAATCCCTTTGGATCCCCATTTCATTAAGAGTTTTACTGAACATAGGCTCTTATTTTACAGGTGAAAATCACAGTATAAAAAATCCAGTTTTGAAGAAGGAGGGTACTGGTTCGTGGAGGCAATAGTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTGCCTGCATAATCATTGGCCAAGAACTCTCCATTTGAATGCAAGTGAATAGCTAAATTGAGCTATCTGTTGACTTGAGAATCTGCTGGATTAGATAATTGAGAATTATAAAGAGATTGGTTGAAGTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGTGTGGAGGATTTTGAAGACTATGTCAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAATGCTGTAAGCCCTATTTCCATTGCATTATATCTCAGGTTATTTTGCGATTAGTCACTATGAAGGATGAAAATATCAGTATTCATGCATATATATATCAGCAATGAGGTTTTGTTTGAATGTTAATATTGGTGAAAATTTGAAGAAAATTTTCTAAGTTAGAAACAAAATATATTTTGAATATTAATACTCCTTCATATTTTGATGTTTATACAGTATTAAAGTCCAGAGTTGAGTAATCTTTTCCCTGAAAAATTGATGGTGAAAATTGGAATTACAAATATTAGGAGGGAAATGTGACATTAATGTTACTTACTTCCTTGTATGCCATATTATTGTGTTGTTTGTTTGCATTTGTATCTTTCCATATTTCCTACCCAAATTATTGCTCTTGCTTTATGATGTGTGGGTAAATATATAAAATCCATAACCCACATCAAGTTGTAGTCTTTTTATGGAAAAGCACTTGTAATTTGTTTCAAGCGTCAGAAGTGTTTAGCTGTAGCTAGTGACTTTATTCTCAAGATAATTGTATGACTCTGTTTTCCCTCTTATTTTCTCTAGTACACGTTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCTTCAGCATCAATAGATAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCGTTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAATCAGAACCTCTAAGAAGTGAAGCAGATACAGATTCAGATTCTATGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTCGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGGTTGATTTATTTAATTAACTTCATTTTATCATGGATTTTATTTTATTGCTTATGAAAATCTATGGTTTTGGTCCTCAATATTCTTGTTTTTGAAGCTTCTGGGTGACAAACAAGTTACTGATCCACACACTTTTGAGCATGCCAAAATTTCATTCTGCTCGTTAAATTGTCTTCTTTTTCCAAGCAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTATGGCTCTTTTCTCCATCATATCATATGAAACTCGTTCAATCACTATCTCAAAGCCACCCTATTGGTTGCATTCAAGTGTCCGACTCAGATTGATATTTGGATCTTTTTATGATCTGGAAGTTCTGTGTTTCAGAAGCATTCCTATGGTTTGGAAAAAAATATGACTTTATGATTTGATGCTATTGATTTTAAGATTTTTTTTTGTTTTTTAATATGGATTGGGCATAAGGACCATTCTGGATGTGCAAAATCATCGCGGTTCTTTCAGAAATTGAAAAAACGTCTGGTTAACATAGATGATCTAGTATATGATTCATTTATTTATGTCTATCCTATCCTTGGTCATCTTTGCTTGGAGTCGACGGATTAAGTTATGTCAGAATAACTCCTATAAGAAAACTTCTAGAACATCAGAAGTTTAAGAGAATACATCATCTTTTTCTCTATCCTCCTTAAAATGGGATTAGTCGATTTCATTTTTTGTTTTTGTTGACAACCTGAGGGCCCCCACGCTAATCTGGGGGCACCTACGCTTGCCCCTAGGCTTGAAACTCCAGGAGACACCGAGGGTTTTTCCTACTCAAAGATCCAAACATGTGACCTTTGGGTAGGTGTTATTCAGAGATCGCATGCCCCTTGGGCACTAGTTGATCTCATTTTGACATCAATGTTTATGCTATTTTAGAATAAGATGACATGTTAACGTGGTAACATTTGAAACTCTAAATAATTAAACTTATATAACAGTACATGACCACACCATTTTGTGATATTCAATTGATTGGGTAGTGCATCGGAAATTTATGGTATAATAACTAATGTTTTTTTCCCGTGTCCTTCACTGGTAAAGCTTTGGGAAACGACCTTCATACGAAACATGATCCTTAGATGCTCATCTAAATATAAAATGGCATATTGCATGGTATAAAATCATTCCTTGTTGATGGTATTCTAGTGATCCCAAATCATATTAGAGGTGGAATTAGCTTTTTAAGTTTGTTGCTTAACTAAATTGTACCAGCTAAGCAATTAAACATTTGGATGTAAGGTGAATAATCTTCAGTTTTTATGCAACCCTTTATTTACTTCTGATGGTACATTGAGTCCTCTGATTAATTCATGCAGTATGAACCTTAGTACTGTCACTTGGCTACGATATTTGACAGTAGAAAACTGGTGGAATGTTGAGTACCACATGTTTAAATAAGATTTATCTTTCTAATGATGTTTTTACAGCAGATATGATTTTCAACTGAATCTGAACTGATTTTAAAGAGGTAGACAAATTTTAAATAGGACGAGAAGCCATTGTCTAAAAACCCTGTATTTGAGACCACGGGGAAAGGGAGGTTATCTTTTGGTTTTAGAACTATTGGGGCTCTTTCTCCTCAAACGACCCTGCCATTTTCTGGCTATTGCTGTTCTTTTATTTGCTTGGGGAGATGTATTTTTCTTCTCTGATATAGTTTTCTTTCCTACATATTAGTTATTTCGTTTAGTATTCTTTTTCATAAGTACAGAGATGTAATGTAATTAGCTGTTTTATAAGGATCAAATTGGTTATTCATTGTTTTTGGCATGAGTTTTGTTGGAGTCAATTCTTTTACTACAAAGAAGTTGTTCGTAATGGAGAATCTTTTTTACTCGTCATTAAAACCATAGTTTAAAAAAACTTAGGGAAGACCATTGATTCTTAGTATTTATATAGGTTTGTGAACTCATTATCACCTGTTTGAATTCAAGGGCCATTGGTATGATGCATCACACTTGGGTTTAGAGGACGACAATGCCCCCATTTAGACATTCCTAGTTTATCCAGCTAATCTTGTCCCCTAACATTTGAGGATAAAGGCTAGAGCTTATTGTTGTAATGTTGTACATTGATCAATCTTTCAAACAGTTGGTGCTGAAGCCTTATTATTAGCTAATCCATAGGGTTTCAATAAATTACATAATTCTCAATTTGATCTGTTTATAAAACAAGAAGTCCAGAACCTTGAAAACACAGTCCACCAAGGAATTTAATTTGATCAAATTCTGCAGAGATGACATTTTTTAAAAAAATCTGGGTTTGAGTTCTGAGTCTTTTGATGAGCTGATTGACACTAGCATGGATTATTTGATTTGTAAACTGGGAAGGAAACAGCCTTAACATGTTTGGATGGGTTTCATTAACTTTTATTTCATACCACTATTTTAATATTGTAGGTAATGGCATTCGATGAAACGACTTGATGTTCGTGTCGCGGATGAAGCCAGCAGCACCTTGGGCATAACCAGCAGGAACCATGGTCATTTGTGAATATTGCAGGATAAGATTTTTCAACCTAGTAAATATTATGAATGAAAGTATAACCAAGGTTGGATCCATCTGTTTCCTCTCTCTCTCTCTTTTTTCCTCATTTTCAAAGATTATTTCTAAGTTATACAGTTGAAACTGATGTTTCACCAAAATATCATCTTATAGGGGAAGAAAAAATAGGTGTTGTGAATGACTGAGAAATCTTTCCATTCCATGTTTGGTGTATCTACCTGTGTTCTTTCTTTTTTCTTCTCATGGAAGTAAAATATGATCACCTTTCAACCATCTCTTCTTCTTCTGGAAGAAAAAGAAATGAGCTAAAATTTTACTCTCACGA

mRNA sequence

TTTCTCCTTTATTCAACTATTCTCTTTGTCCCCGGGATCCTTTTTGGTGATGGGCATCCTGATGATCGCGCCAAATTTTGATTGTCCTGTATTGGGTCTCTTAATTGTTTCATGATTTGTATGAATTCGTGGTCCGATCGTCTATTTGTTGAGTTTTTTCTTATGGGATTGTCGTATATTTTGAATAGTTTTTCTCTTGTTCGATACCCCTTATTCTTCACATTGGATGAGTTATGTATGTCCTGGATGATGATGACCAGCTTGGTTTGCTATTGATGTTGTATTCGTATCTTGTTTCCTCATTATCGAAGGAAAGAATCCGTGTTTTCAGAGGTGGCCCAGAAAAAAAAATCTCAATTTGGTGCGATAAGCGGGTGAAAATCACAGTATAAAAAATCCAGTTTTGAAGAAGGAGGGTACTGGTTCGTGGAGGCAATAGTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTGCCTGCATAATCATTGGCCAAGAACTCTCCATTTGAATGCAAGTGAATAGCTAAATTGAGCTATCTGTTGACTTGAGAATCTGCTGGATTAGATAATTGAGAATTATAAAGAGATTGGTTGAAGTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGTGTGGAGGATTTTGAAGACTATGTCAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAATGCTTACACGTTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCTTCAGCATCAATAGATAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCGTTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAATCAGAACCTCTAAGAAGTGAAGCAGATACAGATTCAGATTCTATGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTCGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGGTTGATTTATTTAATTAACTTCATTTTATCATGGATTTTATTTTATTGCTTATGAAAATCTATGGTTTTGGTCCTCAATATTCTTGTTTTTGAAGCTTCTGGGTGACAAACAAGTTACTGATCCACACACTTTTGAGCATGCCAAAATTTCATTCTGCTCGTTAAATTGTCTTCTTTTTCCAAGCAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGATGTTCGTGTCGCGGATGAAGCCAGCAGCACCTTGGGCATAACCAGCAGGAACCATGGTCATTTGTGAATATTGCAGGATAAGATTTTTCAACCTAGTAAATATTATGAATGAAAGTATAACCAAGGTTGGATCCATCTGTTTCCTCTCTCTCTCTCTTTTTTCCTCATTTTCAAAGATTATTTCTAAGTTATACAGTTGAAACTGATGTTTCACCAAAATATCATCTTATAGGGGAAGAAAAAATAGGTGTTGTGAATGACTGAGAAATCTTTCCATTCCATGTTTGGTGTATCTACCTGTGTTCTTTCTTTTTTCTTCTCATGGAAGTAAAATATGATCACCTTTCAACCATCTCTTCTTCTTCTGGAAGAAAAAGAAATGAGCTAAAATTTTACTCTCACGA

Coding sequence (CDS)

ATGGGTGCTGTCTGCTGCTGTTTGAGTGTGGAGGATTTTGAAGACTATGTCAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAATGCTTACACGTTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCTTCAGCATCAATAGATAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCGTTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAATCAGAACCTCTAAGAAGTGAAGCAGATACAGATTCAGATTCTATGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTCGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGGTTGA

Protein sequence

MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGATSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTCLEG

Homology

[Close]

BLAST of Tan0019447.4 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-47
Identity = 107/190 (56.32%), Postives = 130/190 (68.42%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
            S+ SS+S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EADTDSDSMGSAG-KW-NGSACL--EESKENL-GKSSLKFPSTKSTTGVGYA---YTSSE 180
           ++D DS+S G  G KW N  + L  ++SKE    KSSL+   ++S + +  +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLE 183
           DEDVCPTCLE
Sbjct: 181 DEDVCPTCLE 186

[Close]

BLAST of Tan0019447.4 vs. NCBI nr
Match: XP_008459404.1 (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 4.6e-94
Identity = 174/182 (95.60%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDSDS+GSAGKWNGSACLEESKENLGKSSLKFPSTKST+G+GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. NCBI nr
Match: XP_038889911.1 (E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida])

HSP 1 Score: 351.7 bits (901), Expect = 3.9e-93
Identity = 172/182 (94.51%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQ+FL+AYTLIFRRGEVHSVSSSIQG 
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLSAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           + DTDSDS+GSAGKWNGSACLEESKENLGKSSLKFPSTKSTTG+GYAYTSSEDEDVCPTC
Sbjct: 121 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. NCBI nr
Match: XP_004141476.1 (E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus] >KGN52530.1 hypothetical protein Csa_009250 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 5.6e-92
Identity = 172/182 (94.51%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDSDS+GS GK NGSACLEESKENLGKSSLKFPSTKST+G+GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. NCBI nr
Match: XP_022134111.1 (E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 ubiquitin-protein ligase At3g02290 [Momordica charantia])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 169/182 (92.86%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVED+EDYVNPNSS+YRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQG 
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E D DSDS+ + GKWNGSACL+ESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. NCBI nr
Match: XP_022954554.1 (E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954569.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_023548844.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548852.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548861.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548868.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >KAG6602542.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 169/182 (92.86%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+S++S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDSDS+GSAGKWNGSACL+ESKENLGKSSLK PSTKSTTG GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. ExPASy TrEMBL
Match: A0A1S3CA28 (E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.2e-94
Identity = 174/182 (95.60%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDSDS+GSAGKWNGSACLEESKENLGKSSLKFPSTKST+G+GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. ExPASy TrEMBL
Match: A0A0A0KSH8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.7e-92
Identity = 172/182 (94.51%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDSDS+GS GK NGSACLEESKENLGKSSLKFPSTKST+G+GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. ExPASy TrEMBL
Match: A0A6J1BYQ7 (E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC111006466 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 169/182 (92.86%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVED+EDYVNPNSS+YRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQG 
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS+AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E D DSDS+ + GKWNGSACL+ESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. ExPASy TrEMBL
Match: A0A6J1GR85 (E3 ubiquitin-protein ligase At3g02290 OS=Cucurbita moschata OX=3662 GN=LOC111456789 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.1e-92
Identity = 169/182 (92.86%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+S++S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDSDS+GSAGKWNGSACL+ESKENLGKSSLK PSTKSTTG GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. ExPASy TrEMBL
Match: A0A6J1JPB8 (E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487128 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+S++S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EADTDSDSMGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180
           E DTDS+S+GSAGKWNGSACL+ESKENLGKSSLK PSTKSTTG GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180

Query: 181 LE 183
           LE
Sbjct: 181 LE 182

[Close]

BLAST of Tan0019447.4 vs. TAIR 10
Match: AT3G02290.2 (RING/U-box superfamily protein )

HSP 1 Score: 192.2 bits (487), Expect = 3.7e-49
Identity = 108/191 (56.54%), Postives = 131/191 (68.59%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
            S+ SS+S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EADTDSDSMGSAG-KW-NGSACL--EESKENL-GKSSLKFPSTKSTTGVGYA---YTSSE 180
           ++D DS+S G  G KW N  + L  ++SKE    KSSL+   ++S + +  +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEG 184
           DEDVCPTCLEG
Sbjct: 181 DEDVCPTCLEG 187

[Close]

BLAST of Tan0019447.4 vs. TAIR 10
Match: AT3G02290.1 (RING/U-box superfamily protein )

HSP 1 Score: 189.9 bits (481), Expect = 1.8e-48
Identity = 107/190 (56.32%), Postives = 130/190 (68.42%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
            S+ SS+S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EADTDSDSMGSAG-KW-NGSACL--EESKENL-GKSSLKFPSTKSTTGVGYA---YTSSE 180
           ++D DS+S G  G KW N  + L  ++SKE    KSSL+   ++S + +  +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLE 183
           DEDVCPTCLE
Sbjct: 181 DEDVCPTCLE 186

[Close]

BLAST of Tan0019447.4 vs. TAIR 10
Match: AT5G15790.1 (RING/U-box superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-47
Identity = 102/188 (54.26%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MG V  C  V+DFEDY NP+SSV R+C C  C + NFLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 61  -TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 120
             S+ +S S DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 121 SEADTDSDSMGSAG-KWNGSACL--EESKENLGKSSLKF--PSTKSTTGVGYAYTSSEDE 180
           S+AD DS+S    G KW     +  E+SKE   +SS +     T ST+  G  Y +S+DE
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEG-LYITSDDE 180

Query: 181 DVCPTCLE 183
           DVCPTCLE
Sbjct: 181 DVCPTCLE 187

[Close]

BLAST of Tan0019447.4 vs. TAIR 10
Match: AT5G15790.2 (RING/U-box superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-47
Identity = 102/188 (54.26%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MG V  C  V+DFEDY NP+SSV R+C C  C + NFLN Y  +FRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 61  -TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 120
             S+ +S S DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 121 SEADTDSDSMGSAG-KWNGSACL--EESKENLGKSSLKF--PSTKSTTGVGYAYTSSEDE 180
           S+AD DS+S    G KW     +  E+SKE   +SS +     T ST+  G  Y +S+DE
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEG-LYITSDDE 180

Query: 181 DVCPTCLE 183
           DVCPTCLE
Sbjct: 181 DVCPTCLE 187

[Close]

BLAST of Tan0019447.4 vs. TAIR 10
Match: AT5G38895.1 (RING/U-box superfamily protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 90/183 (49.18%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGA 60
           MGA CCC  V+ FE YVNPN+S+ RNC CL+CF+Q+F++ Y  +F RG +H + S+++ A
Sbjct: 1   MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 60

Query: 61  TSMNSSASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           T MNS+ ++D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESEPLR 
Sbjct: 61  TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESEPLRG 120

Query: 121 EADTDSDSMGSAG-KWNGSACLEESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPT 180
           + +  S+++G  G KW+ S   + SKE   K S  F  +K+  G+   Y  S+DED+CPT
Sbjct: 121 DTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDEDICPT 174

Query: 181 CLE 183
           CL+
Sbjct: 181 CLD 174

The following BLAST results are available for this feature:

BLAST of Tan0019447.4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LE94	2.6e-47	56.32	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]

BLAST of Tan0019447.4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459404.1	4.6e-94	95.60	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo]	[more]
XP_038889911.1	3.9e-93	94.51	E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida]	[more]
XP_004141476.1	5.6e-92	94.51	E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus] >KGN52530.1 hypothetical...	[more]
XP_022134111.1	1.3e-91	92.86	E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 u...	[more]
XP_022954554.1	1.3e-91	92.86	E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ub...	[more]

BLAST of Tan0019447.4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CA28	2.2e-94	95.60	E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE...	[more]
A0A0A0KSH8	2.7e-92	94.51	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 P...	[more]
A0A6J1BYQ7	6.1e-92	92.86	E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1GR85	6.1e-92	92.86	E3 ubiquitin-protein ligase At3g02290 OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A6J1JPB8	1.8e-91	92.31	E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Tan0019447.4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02290.2	3.7e-49	56.54	RING/U-box superfamily protein	[more]
AT3G02290.1	1.8e-48	56.32	RING/U-box superfamily protein	[more]
AT5G15790.1	1.5e-47	54.26	RING/U-box superfamily protein	[more]
AT5G15790.2	1.5e-47	54.26	RING/U-box superfamily protein	[more]
AT5G38895.1	1.3e-46	49.18	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..168
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 1..182
None	No IPR available	PANTHER	PTHR46463:SF43	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..182

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0019447	Tan0019447	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019447.4-five_prime_utr	Tan0019447.4-five_prime_utr-LG11:3323929..3324302	five_prime_UTR
Tan0019447.4-five_prime_utr	Tan0019447.4-five_prime_utr-LG11:3324600..3324831	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019447.4-exon	Tan0019447.4-exon-LG11:3323929..3324302	exon
Tan0019447.4-exon	Tan0019447.4-exon-LG11:3324600..3324951	exon
Tan0019447.4-exon	Tan0019447.4-exon-LG11:3325510..3326233	exon
Tan0019447.4-exon	Tan0019447.4-exon-LG11:3328445..3328875	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019447.4-cds	Tan0019447.4-cds-LG11:3324832..3324951	CDS
Tan0019447.4-cds	Tan0019447.4-cds-LG11:3325510..3325941	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019447.4-three_prime_utr	Tan0019447.4-three_prime_utr-LG11:3325942..3326233	three_prime_UTR
Tan0019447.4-three_prime_utr	Tan0019447.4-three_prime_utr-LG11:3328445..3328875	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0019447.4	Tan0019447.4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding