Tan0018993.3 (mRNA) Snake gourd v1

Overview


Name	Tan0018993.3
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	LG10: 63462275 .. 63468248 (+)
Sequence length	2610
RNA-Seq Expression	Tan0018993.3
Synteny	Tan0018993.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGATGGAGAAAACTTTCATTTTCTCTCGTCTCTCCCACAACTTCTTCTTCTTCCTTTTCCCTATCGATTGAACCCTCGTTGCGTAGCCCTTGTCATTGACCCATCACCACGTTGTTGCACTCCATGTTGAATCTCATCGTGCAACAATCTGATTCGCCAGCCTCGTTGCCAAACGTCATGTCCAGGTCGTGTTGCCGCTTCGCTTGCTGCACGCCCACGTCGTTGGTCGTGTGCCGCCACAGCTACGCGTGAACATCGATTGCCAGCCTCATGCAACATCGACTTGTTGTTATTTTTGTTGAAAAATCCAATCGAATATATCCCGAACACTTATACTGCATGTTGAATCGATGAGTAAGTTTTCATGAGTCCTGGCCCGCATTATATTTTTGTTCTTTGGTGTTTTCGGCACAGTTTTAGGATATTAAGGCTAACCCACAATAAATTGGATTGAATTTTAGACCACCCATGACCATTGGGTTTTGGATTCACGAAATCAAACAATTTAGAGTTAAGTTTGGTGGCATGTCGAGTTCGATCAAGGTTGGAGGTGTTTATAATGGAGAGATTTAATTGGGTTGGTCCTTGCCATTATTTGAAGGCTTTGATTGAGTTTTAAGGGATGATTTACTTAGTCAATGGTCATTTAAAGTGGCCCATTGATTATAGGATTCAATTGAGGACACCCATCATATTTAAAGGTCATTTTGGGCAAGTTTGAGTTGATTCGAGTTGTTATCCAACAACTTCTTGCATTATTTGAGTGTAATTTAACTCATGAAACTAAAGTTCCAAGTTGATCTTTGAACTTTAAAGTTCAATGTTGTGAATTTCAAGTGATGGTCTCTTTAAAATTATTATAGGTAGCACTTGATCTCTTTAGTAGGAGTTGGAGGCTCCTTGTTCTTGGACTCATAACATTGTAAGTAGTCATTTGGATTTAAGCACTTAAGTTATTACTTGATTTGGTTTAAGTGTGAACATATGTGATTTGTGAAGGGATGCCTAAAATTGTGCTTTGTGATGCATGTAATGGTTAATTAGGGGATTTGTATGGAAGTTGTGTTTGAGTTAAAAGTGGCCTAACATGTGCTTCTTTCTAATATGTGCTTGAGCATGACTAGCGTTGGATGTTAGACTTAGTAAAGAGCTTAGATAAATGCTCACCTTAACATATTTTGACATGGTGTCTCAAGAAATTCGACAATTGAATTAAGGAGATTGATAATATAGTCTTCAAGGGGACTCAGTCGAATGTATGTGTTCCGAATTTAACTTGTTAGAGCTTTGTTATGGAGATGACCCTTGGAATTGCATGTAAATAGTCGGTAGGATTTTCAAACAAGTTCATAAGTGAAAAGACTTGTTGTGCAAGGTTGCCCGAATGATACATTTTGCTTCGATGTGGTTGGTTGTATTGTTATCTAGATATGTGATTATCTCATTGTATGGTGTTGTTATGTGAAGTATATGTATGGTACAAACTGTTACAATGTTGACTGGGTGCATAGTTTGTTGATTTATAGTGTTTAGCCTATTATGGAAAACGTTTGGCAAAGTTTAGTTTGTCATAGAGTTGGTCGTTGTGAGTTGTATGTTTGGTTGTGGTTAGACTAGAGACCTGATCGTGATTAAGACTCTATTAGGATAGGCACAAGGGTTGAATGAGTTACTTAGGAAACCCATTCAACATTGCACAAACGAAGCTTGTTAAACTAGCACTAACGATCTCCGTGTCACCTATGGGTTGACGAAACTAAGTGTCGGCATTAGGGTTGGAGCTAGTTCATGGGCGATTCCCCCACCGGGTCTGGTTGAGGGATGTCGGTTCCTTTTTCGATGCACATGCTTAGGGGGTGATTCTTCCAACAAGTGTAGGATGTTGGTTACTTTCCTTCATCCTGTGTGCTAGCCTAGAGGCGATTCTCCTTCATTTAGAGTGTGAGGGTTGCTTTCTTTCATGGCTTCGTGGTAGTGAGGTGAGCAGGAGTGAGAGTTGTTTTCTTTCACTGTCATTCGTCAACCTACATTATGGGACCGAGGGTACAACTCGAGACATTACCATCGAGACAGACCTAGAGTGAGTGAAAATTGTAGATGCCTGAATAGGGGTTGGATTGTTCAGGAGTATGTGCAAAGCTGGAGTAATGTTACTTTCTGTTTGTGTTGTTGTAGTTTTGACCTTAAGTGGGATACCTATTGAGTATTTTTAATACTTACCTTCTACTTTGATATTTTTGTTTGCAAATTAGGCTAAACCATGAGGTGTTAGAAACCATGAGGTGGAAGAAAAAACGACTAACTTCCAAATTGGGCCGGGCCCATGTGTCCGTGGACACTGTCCGGCCCAGCTACCTCGAAATCATGCATAAATTGAAATAAAAATCAAATAAAATATATATTTTTTGTTTGAAAAAAAAATCAAATAAAATATTAACATTTGGCTGATTGTTTTATGAATATTATACATTGGAATATTTTAACATTTAATTTCGTCGGTGTAGTTTTCGAGCGAAATAACCTTTCCGGCTACGGTTGGGCCAGAAGCTCTTCTCTCTGATCTCCATCTCCGAGGATTCCGCCGGCGACGACGAACCAGTTCGCGAATTCTTCTGGATTCGTAGCACGAAGTTTGGTGACACCGTGAACTACGTTAAGTGGCAATTTCCCCTTTCTTACTTTCGATGTGATCTCTCTGGAATTCGATTCTAAATACATGCTCGTATTACTCCATTTCTGTTTTGTTTGAGCATTAATGGAGGTTAATCTCGGGGAAACTTTTGCATATTACGGGGTTCCAGCCCCAATTTTGGTTTTTTATTACCCAGTGATCTTGGTTCAAGAATTCCAGAAAACGAATATTCCGTTAGTTATGCATTGTGCATCTCGTTGCAATCGTCTAGTCGCATTCGGCGTTGACATAGGATAATCCCATTTCGTTGGTTCGTAGATCACTTTTTTCAAAATTACAGCAGATATAATTGTTAGTTTCTGGCCACTGACTATATTCTGTTCTGGTCTTCAAGATTTCGTGATTGAATCTGCATGTTAGTTTCATTACAATTGTGGTAGCTGCGATCTTGACTCCATGGATTTTTTCTCGAACAGCTGAGCAGTGAGGTTTATTCTCAGTTATTTTTTGTTTTGATTTCTCTCTTGTAGATGGCAGACTCATAAGATGCTCGAATTGTGGAAACTATTTTCATTTTTAGACTTTTTTGCCTCACATTATGAATATTGTAATTGTTTCTACATTATGCTGGTAGCTAACGAACTAATACGAGTCCGGAGAAAGATGGGCGATTATCATTGTGAATGATGAACTTTGTGATCTCTTTCAGAAATTGCAAGAGATGTATAGTCCGGACGAGGACAGCAATGTCTCTGTTGAATTGGAGACTTCTATTAATCCAAATGGTGATCTTCAGGAAGGAAATAATATTGCAGATGTGAATTTGGGAAACTCTAATGCTATAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGACCGACTTACTTCAGGTAGGATTATATTTACTTTGTTTTATTAGGTTTATCACAGAAAATAGAATTGCTTCCTTGTACTTTGACTAATTATTATATAGCTTTTAAGATTCTGTCATTTACTAGGTTTAAGGGAAGTTTATACATCGTAAATGAATATTCTCTCATAATTTACATTTTTCTTGTCTTGGATGCAAAAATGCAGCTTCTGAATTTCATGGATTTTTCAATGGTGTGAATAGTTATTATTTTAACTTTTAACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAGTGTAAGAAAGAGAGTTTTGTCTCTAAATTCCATCTTAAGGTCCATACAACGAAGAGTGGATAATATAGATCGGGCAATCTCAATGGGTAATCTACCAGGTGATTGACTTCTTTCTTCGAGGGCCTCAATTTTATTATCTTTTATGACTTTTAATTTAATGGAAAATATTGGATAATATCATTGGCTGTCAAGGCTTGTTTAATAATGTTCCTTATTCTCTCTGTCATTTTATTGGAAAAAAAAGGTGTTATCACAATTGTTTTATTCTTTATTGATTCAACGTATAAATGATAAGGAGTGAGAGATGATGAAGTTTCTGAGTTGCCCTTTGTTCTTCCTCACGTTCCCTATATAATTCTTTTTGTAGTTATACATTTTATAATTAACTTTGATTGGGCTATTTTTGTAAGCTCGTTATTGTCAGATTTTATATGTAACTTTTCACTACATTAATGAGTTTGCGTGGAATATATTACTCTTTAGATAACGAGATAGAATCAAGATAGATATTCATTGGAAAACTTCGGTTTGTTACTTCTTATGGAAGATTTTAAACTTTCCTTTCACATGTTGAACAAGGAGAATTTTAATGATGATTTTAAACCTACCAGCAAGGATCTTTTACTTTTGAGTGAAGAGATGGAATTGAAGTATTAAATGCAAAACCTCAGCTGTTCTTTCTCAGGGTTTCTCATTCAAATATCATATGAATTTTTTTTATACATATGCATTTGGATGTGTACCTAATGTGACTCTGTCCAACAATTTTGGCATGTTTCTCCGGTGCATGAGACCAATGTGTTAGTTTTTGGAAAGTTTAGGCTAAGAATCTATTCTCCTCTTGTTCAAATAATCGTTCCATGATTTTTTTATAGCCATGCTTCTTAGGTCATAAATCATGATTTTGTTTTGCTTTCTGAATTACATTGGGTGATGCTTCCATGGGACAAATCATTTTGCTTCTTTGTCGGGTAGTCTCGATCTTGACAACTTGATTTCTTTCTTCTTTGTACCTTTTTTTTTTTAAATTATGTTAATGACATATACTGAACTGAATTTCCTATAGTTTCCAGGCATTTAAATATCTATGTAGGTTCTTCTTTTTTAAGATCTAAAGACGGGAGAATGAAAGAAGAAAAGGGAGTAGCACCATAACAGATGGAAGTTGACTGGTGGTGGTAGGGTTTGGAAATGAGGGGAAAAGGTTGATTTTGGCATTAAGAAGTCGAGGAAAGTCCGAATTTTCATTTTAAAACGCAATGCATGAAGAATTAAGTAAACTTTTGGAGTGGCTCCAAATAGAAGCATATGTATACTCTTATATTGTCACTAGGTACTAAGATCCAAGTGGACTATTTAAGAAATAGACTCTACTAGAATCAACTTGTGTGCCCTTCGAACTAATCTCACATTTCTACATTTGGTTGCCAAAAAAAGTCGTAGGATGTTAAATCCTAGCTTACCGGTGACCGCCGTGATTTGAACTCAAAGATGTTTATTCTCTTTTCCTTTCCTTTACCCCTTCCCTTCCCTTCTCATTATGTAGCCTGCATCAATTAGTGATATGAATTATGGTCTTCATAGACAAAGAAAATACATGCTCAGTTTTCAATCACACTGATTACCATCAGATTGCTGTCTTATAGATTAATTGCTTATTTCTGATTAACAGTCTACAACCAGGGGGGGCAGGCATTCATTTTGTGGTTCATTTGGCTGATTGTATATGCATATTTATTATACATTGGAATAAAAATTAAGTAGCGTGAGTATAAGATAACCCCATGCTATTTATTTCATTGTCTCTTTGACACTAAAATGTACCAGTTATCTACAGATACTCGTTCCTCTCAAAGTTCCTCACAACCTCAGAATGGATGAAGATTGTACGTATCTGCAGTTCCTTTTCATTCTTCATTTTATGTATCCGAAGTTTTGGCAATTGTGTGTATCCTTTTACTGCCCCCTCCATTTTTACTACTAGGCTTGAAAATACTGGAATAGAAAGACTGTTTCTGAATCAACAATTTTGAATCTTACAATACAACCTGCATAATTTATCGATC

mRNA sequence

CAAAAGATGGAGAAAACTTTCATTTTCTCTCGTCTCTCCCACAACTTCTTCTTCTTCCTTTTCCCTATCGATTGAACCCTCGTTGCGTAGCCCTTGTCATTGACCCATCACCACGTTGTTGCACTCCATGTTGAATCTCATCGTGCAACAATCTGATTCGCCAGCCTCGTTGCCAAACGTCATGTCCAGGTCGTGTTGCCGCTTCGCTTGCTGCACGCCCACGTCGTTGGTCGTGTGCCGCCACAGCTACGCGTGAACATCGATTGCCAGCCTCATGCAACATCGACTTGTTGTTATTTTTGTTGAAAAATCCAATCGAATATATCCCGAACACTTATACTGCATGTTGAATCGATGATTTTCGAGCGAAATAACCTTTCCGGCTACGGTTGGGCCAGAAGCTCTTCTCTCTGATCTCCATCTCCGAGGATTCCGCCGGCGACGACGAACCAGTTCGCGAATTCTTCTGGATTCGTAGCACGAAGTTTGGTGACACCGTGAACTACGTTAAGTGGCAATTTCCCCTTTCTTACTTTCGATGTGATCTCTCTGGAATTCGATTCTAAATACATGCTCGTATTACTCCATTTCTGTTTTGTTTGAGCATTAATGGAGGTTAATCTCGGGGAAACTTTTGCATATTACGGGGTTCCAGCCCCAATTTTGGTTTTTTATTACCCAGTGATCTTGGTTCAAGAATTCCAGAAAACGAATATTCCGTTAGTTATGCATTGTGCATCTCGTTGCAATCGTCTAGTCGCATTCGGCGTTGACATAGGATAATCCCATTTCGTTGGTTCGTAGATCACTTTTTTCAAAATTACAGCAGATATAATTGTTAGTTTCTGGCCACTGACTATATTCTGTTCTGGTCTTCAAGATTTCGTGATTGAATCTGCATGTTAGTTTCATTACAATTGTGGTAGCTGCGATCTTGACTCCATGGATTTTTTCTCGAACAGCTGAGCAGTGAGGTTTATTCTCAGTTATTTTTTGTTTTGATTTCTCTCTTGTAGATGGCAGACTCATAAGATGCTCGAATTGTGGAAACTATTTTCATTTTTAGACTTTTTTGCCTCACATTATGAATATTGTAATTGTTTCTACATTATGCTGGTAGCTAACGAACTAATACGAGTCCGGAGAAAGATGGGCGATTATCATTGTGAATGATGAACTTTGTGATCTCTTTCAGAAATTGCAAGAGATGTATAGTCCGGACGAGGACAGCAATGTCTCTGTTGAATTGGAGACTTCTATTAATCCAAATGGTGATCTTCAGGAAGGAAATAATATTGCAGATGTGAATTTGGGAAACTCTAATGCTATAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAGTGTAAGAAAGAGAGTTTTGTCTCTAAATTCCATCTTAAGGTCCATACAACGAAGAGTGGATAATATAGATCGGGCAATCTCAATGGGTAATCTACCAGTTTCCAGGCATTTAAATATCTATGTAGGTTCTTCTTTTTTAAGATCTAAAGACGGGAGAATGAAAGAAGAAAAGGGAGTAGCACCATAACAGATGGAAGTTGACTGGTGGTGGTAGGGTTTGGAAATGAGGGGAAAAGGTTGATTTTGGCATTAAGAAGTCGAGGAAAGTCCGAATTTTCATTTTAAAACGCAATGCATGAAGAATTAAGTAAACTTTTGGAGTGGCTCCAAATAGAAGCATATGTATACTCTTATATTGTCACTAGGTACTAAGATCCAAGTGGACTATTTAAGAAATAGACTCTACTAGAATCAACTTGTGTGCCCTTCGAACTAATCTCACATTTCTACATTTGGTTGCCAAAAAAAGTCGTAGGATGTTAAATCCTAGCTTACCGGTGACCGCCGTGATTTGAACTCAAAGATGTTTATTCTCTTTTCCTTTCCTTTACCCCTTCCCTTCCCTTCTCATTATGTAGCCTGCATCAATTAGTGATATGAATTATGGTCTTCATAGACAAAGAAAATACATGCTCAGTTTTCAATCACACTGATTACCATCAGATTGCTGTCTTATAGATTAATTGCTTATTTCTGATTAACAGTCTACAACCAGGGGGGGCAGGCATTCATTTTGTGGTTCATTTGGCTGATTGTATATGCATATTTATTATACATTGGAATAAAAATTAAGTAGCGTGAGTATAAGATAACCCCATGCTATTTATTTCATTGTCTCTTTGACACTAAAATGTACCAGTTATCTACAGATACTCGTTCCTCTCAAAGTTCCTCACAACCTCAGAATGGATGAAGATTGTACGTATCTGCAGTTCCTTTTCATTCTTCATTTTATGTATCCGAAGTTTTGGCAATTGTGTGTATCCTTTTACTGCCCCCTCCATTTTTACTACTAGGCTTGAAAATACTGGAATAGAAAGACTGTTTCTGAATCAACAATTTTGAATCTTACAATACAACCTGCATAATTTATCGATC

Coding sequence (CDS)

ATGTATAGTCCGGACGAGGACAGCAATGTCTCTGTTGAATTGGAGACTTCTATTAATCCAAATGGTGATCTTCAGGAAGGAAATAATATTGCAGATGTGAATTTGGGAAACTCTAATGCTATAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCTAGTGTAAGAAAGAGAGTTTTGTCTCTAAATTCCATCTTAAGGTCCATACAACGAAGAGTGGATAATATAGATCGGGCAATCTCAATGGGTAATCTACCAGTTTCCAGGCATTTAAATATCTATGTAGGTTCTTCTTTTTTAAGATCTAAAGACGGGAGAATGAAAGAAGAAAAGGGAGTAGCACCATAA

Protein sequence

MYSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVDNIDRAISMGNLPVSRHLNIYVGSSFLRSKDGRMKEEKGVAP

Homology

[Close]

BLAST of Tan0018993.3 vs. NCBI nr
Match: XP_038897519.1 (uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 119/134 (88.81%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 2   YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKAD 61
           YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKAD
Sbjct: 11  YSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKAD 70

Query: 62  DTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRV 121
           DTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS+VRKRVLSLNSILR+IQRRV
Sbjct: 71  DTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRV 130

Query: 122 DNIDRAISMGNLPV 136
           DNIDRAISMGNLPV
Sbjct: 131 DNIDRAISMGNLPV 144

[Close]

BLAST of Tan0018993.3 vs. NCBI nr
Match: XP_038897517.1 (uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-53
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 2   YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKAD 61
           YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKAD
Sbjct: 11  YSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKAD 70

Query: 62  DTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRV 121
           DTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS+VRKRVLSLNSILR+IQRRV
Sbjct: 71  DTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRV 130

Query: 122 DNIDRAISMGNLP 135
           DNIDRAISMGNLP
Sbjct: 131 DNIDRAISMGNLP 143

[Close]

BLAST of Tan0018993.3 vs. NCBI nr
Match: XP_038897521.1 (uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-53
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 2   YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKAD 61
           YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKAD
Sbjct: 11  YSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKAD 70

Query: 62  DTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRV 121
           DTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS+VRKRVLSLNSILR+IQRRV
Sbjct: 71  DTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRV 130

Query: 122 DNIDRAISMGNLP 135
           DNIDRAISMGNLP
Sbjct: 131 DNIDRAISMGNLP 143

[Close]

BLAST of Tan0018993.3 vs. NCBI nr
Match: XP_038897518.1 (uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-53
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 2   YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKAD 61
           YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKAD
Sbjct: 11  YSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKAD 70

Query: 62  DTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRV 121
           DTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS+VRKRVLSLNSILR+IQRRV
Sbjct: 71  DTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRV 130

Query: 122 DNIDRAISMGNLP 135
           DNIDRAISMGNLP
Sbjct: 131 DNIDRAISMGNLP 143

[Close]

BLAST of Tan0018993.3 vs. NCBI nr
Match: XP_038897522.1 (uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-53
Identity = 118/133 (88.72%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 2   YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKAD 61
           YS +E+SNV  ELETSI+PNGDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKAD
Sbjct: 11  YSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKAD 70

Query: 62  DTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRV 121
           DTLKSQSQLSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS+VRKRVLSLNSILR+IQRRV
Sbjct: 71  DTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRV 130

Query: 122 DNIDRAISMGNLP 135
           DNIDRAISMGNLP
Sbjct: 131 DNIDRAISMGNLP 143

[Close]

BLAST of Tan0018993.3 vs. ExPASy TrEMBL
Match: A0A1S3BAU4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 117/136 (86.03%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 2   YSPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKAD 61
           YS +EDSNVS ELETSI+P GDLQEGN+  + NLGNSNA+ANGLSSMLINIIRDFDSKAD
Sbjct: 11  YSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLINIIRDFDSKAD 70

Query: 62  DTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRV 121
           DTLKSQ+ LSSSLDRLT+ELDQLLEDAPFPFIMQHASRIS+VRKRVLSLNSILR+IQRRV
Sbjct: 71  DTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRV 130

Query: 122 DNIDRAISMGNLPVSR 138
           DNIDRAI+MGNLP +R
Sbjct: 131 DNIDRAITMGNLPDTR 146

[Close]

BLAST of Tan0018993.3 vs. ExPASy TrEMBL
Match: A0A6J1IKP2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111477110 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-49
Identity = 112/130 (86.15%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 5   DEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTL 64
           +EDS+ SVELETSI+ NG+L+E N++A+ NL NSNA+ANGLSSMLINIIRDFDSKADDTL
Sbjct: 13  NEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTL 72

Query: 65  KSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVDNI 124
           KSQSQLSSSLDR+T+ELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRR+DNI
Sbjct: 73  KSQSQLSSSLDRITTELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNI 132

Query: 125 DRAISMGNLP 135
           DRAISMGN P
Sbjct: 133 DRAISMGNRP 142

[Close]

BLAST of Tan0018993.3 vs. ExPASy TrEMBL
Match: A0A6J1FHK0 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.5e-49
Identity = 110/132 (83.33%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 3   SPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADD 62
           S ++DS VS ELE SI+PNGD++E N+IA++NLG+SNA+ANGLSSML+NI+RDFDSKADD
Sbjct: 11  SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADD 70

Query: 63  TLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVD 122
           TLKSQSQLS SLDRLTSELDQLLEDAPFPFIMQHA RISSVRKRVLSLNSILRS+QRRVD
Sbjct: 71  TLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVD 130

Query: 123 NIDRAISMGNLP 135
           NIDR ISM NLP
Sbjct: 131 NIDRVISMSNLP 142

[Close]

BLAST of Tan0018993.3 vs. ExPASy TrEMBL
Match: A0A6J1FIR1 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.5e-49
Identity = 110/132 (83.33%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 3   SPDEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADD 62
           S ++DS VS ELE SI+PNGD++E N+IA++NLG+SNA+ANGLSSML+NI+RDFDSKADD
Sbjct: 11  SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADD 70

Query: 63  TLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVD 122
           TLKSQSQLS SLDRLTSELDQLLEDAPFPFIMQHA RISSVRKRVLSLNSILRS+QRRVD
Sbjct: 71  TLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVD 130

Query: 123 NIDRAISMGNLP 135
           NIDR ISM NLP
Sbjct: 131 NIDRVISMSNLP 142

[Close]

BLAST of Tan0018993.3 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 112/130 (86.15%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 5   DEDSNVSVELETSINPNGDLQEGNNIADVNLGNSNAIANGLSSMLINIIRDFDSKADDTL 64
           +EDS+VSVELETSI+ NGDL+E N++A+ NL NSNA+ANGLSSMLINIIRDFDSKADDTL
Sbjct: 13  NEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTL 72

Query: 65  KSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRVDNI 124
           KSQSQLSSSLDR+T+ELDQLLE APFPFIMQHASRISSVRKRVLSLNSIL SIQRR+DNI
Sbjct: 73  KSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNI 132

Query: 125 DRAISMGNLP 135
           DRAISMGN P
Sbjct: 133 DRAISMGNRP 142

[Close]

BLAST of Tan0018993.3 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 121.3 bits (303), Expect = 7.1e-28
Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 36  GNSNAIANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQ 95
           G   A+A GLS+ML ++I+DFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+Q
Sbjct: 32  GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLVQELDQLLENAPLPFIVQ 91

Query: 96  HASRISSVRKRVLSLNSILRSIQRRVDNIDRAIS 130
           HASRISSV++RV SLN +L+S+QRR+DNID  +S
Sbjct: 92  HASRISSVKQRVSSLNLVLKSVQRRIDNIDHMLS 125

The following BLAST results are available for this feature:

BLAST of Tan0018993.3 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018993.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897519.1	1.2e-53	88.81	uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]	[more]
XP_038897517.1	4.6e-53	88.72	uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]	[more]
XP_038897521.1	4.6e-53	88.72	uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]	[more]
XP_038897518.1	4.6e-53	88.72	uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]	[more]
XP_038897522.1	4.6e-53	88.72	uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]	[more]

BLAST of Tan0018993.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAU4	1.4e-52	86.03	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucumis melo OX...	[more]
A0A6J1IKP2	1.1e-49	86.15	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1FHK0	2.5e-49	83.33	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1FIR1	2.5e-49	83.33	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1FEP4	4.3e-49	86.15	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]

BLAST of Tan0018993.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	7.1e-28	67.02	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 40..124 e-value: 1.0E-20 score: 73.9
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 28..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0018993	Tan0018993	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018993.3-five_prime_utr	Tan0018993.3-five_prime_utr-LG10:63462275..63462632	five_prime_UTR
Tan0018993.3-five_prime_utr	Tan0018993.3-five_prime_utr-LG10:63464783..63465631	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018993.3-exon	Tan0018993.3-exon-LG10:63462275..63462632	exon
Tan0018993.3-exon	Tan0018993.3-exon-LG10:63464783..63465869	exon
Tan0018993.3-exon	Tan0018993.3-exon-LG10:63466116..63466280	exon
Tan0018993.3-exon	Tan0018993.3-exon-LG10:63467249..63468248	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018993.3-cds	Tan0018993.3-cds-LG10:63465632..63465869	CDS
Tan0018993.3-cds	Tan0018993.3-cds-LG10:63466116..63466280	CDS
Tan0018993.3-cds	Tan0018993.3-cds-LG10:63467249..63467337	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018993.3-three_prime_utr	Tan0018993.3-three_prime_utr-LG10:63467338..63468248	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0018993.3	Tan0018993.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex