Tan0018658.1 (mRNA) Snake gourd v1

Overview


Name	Tan0018658.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotransposable element Tf2
Location	LG03: 3338354 .. 3344312 (+)
Sequence length	1488
RNA-Seq Expression	Tan0018658.1
Synteny	Tan0018658.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAATGTCAATCCAACGTCGCAAGCTCAATCGCAAAGACACAAGAAAAGTCAAAGAAAAATCAAAAGATACTCTAACAGAAAGAAGGTTCCGTATGCTCCGCCTACAACATACAGAGAACATAGTGACTCAAAAAGGAAGATTTCTAGAAAAGATGGGAAGAGACCTCAATCCCATTATGAGAAGGCACGAAGAGGATCTAATAAGCAAGTCCAGTGCTACAAGTGTAAGAAGTTTGAGCATTATTCAATTAAATGCCCATTAAAGGGAAGAATCAACGAACTAAACATTGATGAAGAATTCAAGAAAGAATTACTCATGGCATTCGGTTCGGATTCTAGCAGCAATTCAGAAAGCACTAACGACGATATCCACGAACTAAGAGAAGAATCAGATACTTATTCCTCAGAAGAAGGAGAAATACATGATCTTGAATGTCAGGGAGGACGGCTACGCAACTGTTACAGCTGCATAAATGTTCTCAGTGAAGATCAAAAGCTACTCCTGGAACTCTTGGACAAAGTACCTGATGAACATATCAGAGAAACAATTCTCAAACAACTCCGTAACTCTTTCAAGAAAGAAGTTAAAGATGAAAAGAAGAAAAGAACTACTGACATCCTAGACATCACCCCAATAACAATCAATGATGTATTGGGAAAAATCAGTATCAAAATAGAAGTCTCAATGCAAGACCTACAATTTGAAATCAACAACCTAAAGGAAGAAGTTTCAAACCTCAGAAGAGAGTTAAGAAAAGAACTAACTAAGGTAAATTCTGAAGTAGCCATACTAAGAAAAGGAAAACAAAAGGTAGTAGAAATTCAAGAACCACAGGTCTCAGTTGATGAACAGGTATTCTTGAACACCATTTCGAAGGTACCCTATCAAAAGTGGTATACAGAAGTCACATTAAAAATTGGAGACTTCAATACGACTCTACCGACCCTGATAGATTTAGGAGCAGATCAGAATTGTATCTACGAAGGAATAATACCTTCAAAATATTTTGAAAAAACGACTGAAGTCTTAAGAGGAGCCAATGGAGTTCCATTAAAAATCAGTCACAAGCTCTTAGAGGCACACATCTGCAAAGAAGGCATTTGCTTCGTGACCTCATTTTTATTGGTAAAAAAACCTAAGCCAAGCAATGGTTTTGGGGACTCCGTTTATTACTCAACTGTACCCATTAGAGGTTTCAGATGAAGGAATTTCTACCAAAATACTAGGTAAGAAAATACTTTTTGAATTCAAGAGACCGATGCAAGTTCACAAGGTCCATGTCCTTACTAAGGATGTTGAACTCACAGAAATCGACCTGAAAGAAAAGCAAATAGCTTTCCTGAAAGAAGAAATCATCTACAAAAGGATTGAAGAAAATCTCCAAGAAAAGGAGATACAAGACCGAATTCAAGCTTTGAAAAAAGAGACTCGAATCAGAAGTCTGTGCAGAACATCCTAATGCATTTTGGGATAGAAAAAAGCATGAAGTCGAATTACTCTACATAAAGGACTTTGATGAAAGCAAAATTCCGACTAAGGAAAGGTCGATTTCAGATGAATTCTGAATTAATGAAGCATTGCAAAAAAAAGAGAGAAGAATTGTTTCAAAATAAATTAATCAGACCTAGTAACAGCCCATGGTCATGTGCAGCATTCTATGTGAACAACGCAGCCGAGAAGAAGCGTGGAGTGCCCAGGTTAGTTATCAATTACAAACCATTAAACAAAGTTCTGGAATGGATTAGATATCTAATCCCTAACAAAATGGATTTGTTAAAGAGAATATCTAATGCAAATGTATTTTCCAAATTTGACATGAAGTCACGATTTTGGCAAATACAACTTGCAGAAAAAGACCGCTACAAGACTGCATTCAATGTTCCTTTTGGGCAATATGAATGGAACGTTATGCCATTCGGCTTAAAAAATGCTTCGTCAGAGTTCCAAAAAATCATGAATGACATTCTTGAACCGATCCAAGATTTCTCATTAATCTATATAGATGATGTGTTAATCTTCTCAAAAGGGATTGATCAACACTTTTCTCATATAGAGAAATTTTTTAAAATAACAAAACAAAACGGTTTGGTTATTTCGATTTCAAAAATAAAATTATTTCAAACAAAAATTAGGTTCCTTGGATTCGAAATTTATATGGGCCTAATAAAGCCAATTTACAGGTCCATTGAATTTGTCGATAGATTTCCAGATCAATTTTAAACAAAACCTAGTTACAAAGGTTTTTGGGTTGTCTCAATTATGTTCCAGACTTTATAAAAGATCTGAGGCCCATTTGCAAGCTACTTTTTCAAAGACTTAGAAAAAACCCAAAACCCTGGATAGTTGAACACACTTAAGTTGTACAAAAGGTTAATACTTTAGTAAAATCAATTCCCTGTTTAAATCTTATCAATCCAAAAGCAGATTTAATAGTGAAATCTGTAAACCCGAGATCTTTCTTTGGAACTTCCTTATTAAGAAAAAAAACAACAAAAGGAAAGAAGAAATGAATGTTTAAAACTTGGTTTTCCATGTTTTTAAAAAGAAAAGAAATGAAGTGAAAGACAAAAGGAAAACAAGGAAGGAAAGTTTAAACCATTTTGGTTTGGTTTGCTTTAAAAAATAAAAGAAGAAAAGGAAATGAAAGAAAAGTTAAATATATTAAGTTTTGTTTTGTTTTGAAAAGAAAAGAAAAGAAATGGAAGAAAGGGATAAAGGAAAGAAAAGAAAAGGAAAAAGAAAAAGAAAAGCAAAAGGGGAAAAGGGAAAAAGACAAAAAAATACCTCTTCCACCGTTTGTTTTTTTTTTAAGTCTTATCTCTCCATTTTCTTCTTCATTTACCAAAAGGAATCTGTAAGCTTCGTGAGCTGAAGTTCAAGGGAGAAGAAGAAGGAGAAAACCTCTGATTTTGGAGCTGGAATTGTAGAAGAAAGGAGAAAAACTCAAGGGAATTATTATAGCAACAAGGTGAATCATTCTTCCATTGTCTGATGTTTTGATCCTCTCGAGCTCTACAAGAAGAGGTAAGTGTTGAAGTTTGCTTTTCCTGAAAGCTAACCCATTTTTAAACAAAGTTCATGAAGGAAGCTCGAGCAAATTCGTATGTTAAGTTATTGTTTTGTTAAGAGGAAGGCAGAAGACAGAAGTTTGCTGTCAAATCCGGGAAGTCTCTGGTTTTTGGGTTGTCCTGATCTGTAGAGTTGGAGTTAGAAGCTCTAAAATGTATGGTTCGAAATATTATTGAATTTCCTACAACGTTCGTGAAGGAATCGTGAGAATAAAATGATTGGAAGATGTTGTAATCATCAGGTTAAGTTTCGGGTTGCAGCAGGAAATTAAATCTGAACAAAGAAAGAGGTCATTTTAGGGATTAAGATACTGAGATATTTTCGAACCAATACGTTAGGAATCTCAGTTTCATGTCTTCATATGTTGTAATCATCAGGTTAAGTTTCGGGTTGCAGCAGGAAGTTATGGCTGTCTGAAAACAGGGCAGAAAATCTGAAAATGCTGGAAAATTTGAAAGTGTGTTTTCTTGTAGTTTTAAGGTTAGAAATCATGAGCTCGAGGTTCTAATACATGGATTTGGTTTGTTTGACAGGCCAAGAGGAGATAGGTCGAGTGTACGGGCTAAGATTCTAGTTCTATCACTATGAGTGACAAAACGAACTTCAAAAATGTTCTATATACTTGAATTATGTTTTAAGAAATACAAGTTTTGCTTGAATGAAAGGGTTTAGATGTTTATTGTTTTCCTTGAACACTTGTTTATGAGCATTCATGATTTCTTAGAAATGTTTTAAAGTGTTCATGTTGAACCTAAATGTCTTGATGAAATTTATACACGAGCATATGTTTATTGAATTCCCGAAGTTTATGGAAATGTTATGATTTCGAGCAAGTAAGTTTAGCAAGTATGTTTTTAAAGATTTCCAGTTTTATGAACAAGCTAAGTAAGCTTGAGTTTTATGAAAGAAAAGATAAGCAGGCATGTTCAAATGTTTTCATGTGATCTTCTGAGATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACATAGGTCATTTCTGTTGTCGACGTTGAGTGAACTCCGTGACAACAGCGCTGTCGTGAGTGTTGGGCGGGCCCCACTACATCGTAGAACAAACGTAGATTGTGACATGTTTTAAAAAGAGTTTATATCATTTACATGCCTTACGAGATTTTAACGATATACTTGTTGGTTTCCTGAAAGTCTATTATGATTCTACGTTTACTTTCAACGCTTGAATACAAATGCATATGCTCATAGTTTTCAGGTGACATGTTTTACAAGTTATAGATTTTAAACACAGTCACTCACTGAGCTTCATAGCTCATTCTTTCAATGTTTTCAAACTTTTAAGGTAGAGATCAAGCTCCTGGTACCTGAGTTACTGCCATAGTCTGCTAAAGCTCCATAAGTTGTAATACTTTGTACGTGGCTGGCGTTGTATAGCAAGTCCATATGTTTTGTAAATTATTTTGAGAGGACTATGTAATTGTAGTTGGTTGTACATTAGGGGTTGTATAAACAATGGTTTGTCTTGTGTTGTTGCTAATGCTCCTGACTTCTTACTTTTCAAAAGAGACTTATAAAGGGTTTCTTCTTGTGTATGTTTAATAGTTGTCCACTTTCCGCTGTGTTATGTTAAAGTGTTCCATATGCGAACATAGTATGTTTATCAGGAGAACAGGGTCAGCAGGTATTGTTAAGAGGTAAACAATGTTTGTTGGCTTCACGCCGCCTTTCGGGCTAAGTAGCAGGTAGTTCGGGAGGGGGTGTGACAGAATCCGACGCATCCGACATAGGATATGGAGGAATCCTGAAACAGTCTCTTGAAGGAAAAGAAGGGATAATACGTTTTTACTCTGGCGTCTGGAATGAGACCCAGAAAAATCACTCAGTTGTTAAAAAAGAAATTTTAGCAATTGTTTTATGTATCAAAAATTTCAAGGAGATCTAATTAACAAAAGGTTCAAAATTAAAACAGTTTCAAGAACCTCAAAATTCATTTTAGAAAAGGATGTAGAGAATCTTGTCTCAAAATAAATTTTGCAAGATGGCAAGCAATTTTATCATGCTTTGATTTCGAAATTCTGCCTATAAAAGGAGTGAAAACCCTTTTACAGATTATCTCACAAGTGAGTTCCTAACTCCAAAACCAAATTCTCTCTCTCTTTCTTCCTCTTCTTTAAAAGATAATAGGAAAAAAGATCATGACGAGCAGAAAGGGTAAAAACCCTGCAACACCCAAGGAAAAGGGAAAAAATTCAATTTCTTCATCGTCTCAATTTCCCAAGCTGATATCAATCGATGACTATCTCTCGGATTCTGATTTCACACTGGTGGTCAGACCAAGAGGAAGAACATCTCCTGGCATAAGCTTAAGGGAACCTCTAGAGTCATCGACTCCGACTCAAACTCCACCACAGCCATCGGCCAACCTTACCCGTCAGAGAAGACGACATGTCTCTCCGACAACGTGTGTACAAAGCTCTAGAAGAGCACCTTCAGTGACTCCCTCTCAACAGGGATCCTCATCAAGAGTTACACCAACTCCGTCTCAACCTTCTACGTCTCATAGACCAACAACCTTTGCGACAACCGTCGTTCCACAACAAAGGTTTGTACCTCGACTAGAGGTGAAAACCTATTTTGAAAACTCCAGTCAACTCTTTGAACCGGTTATTGAACAAGAATTCGAAGGAGAATCCATAGTCTCAATTATCAAAACCATTTTTCCAGAAGGTTTTCTGTTCATCCCAGAAGACCCTCTAAAGACCAGAAAATTTTACGAGCTGATCTTAATCGACACCAAATTTGTTGAGATCACTCATATTCCAGATAGAGATGATCTATCTAGGATCGCATTCTCTAAAATAAAGATTTTCAAAGTCCTGACTCCAACCGATTGGTATCAGAGCCAATAA

mRNA sequence

ATGTATAATGTCAATCCAACGTCGCAAGCTCAATCGCAAAGACACAAGAAAAGTCAAAGAAAAATCAAAAGATACTCTAACAGAAAGAAGGTTCCGTATGCTCCGCCTACAACATACAGAGAACATAGTGACTCAAAAAGGAAGATTTCTAGAAAAGATGGGAAGAGACCTCAATCCCATTATGAGAAGGCACGAAGAGGATCTAATAAGCAAGTCCAGTGCTACAAGTGTAAGAAGTTTGAGCATTATTCAATTAAATGCCCATTAAAGGGAAGAATCAACGAACTAAACATTGATGAAGAATTCAAGAAAGAATTACTCATGGCATTCGGTTCGGATTCTAGCAGCAATTCAGAAAGCACTAACGACGATATCCACGAACTAAGAGAAGAATCAGATACTTATTCCTCAGAAGAAGGAGAAATACATGATCTTGAATGTCAGGGAGGACGGCTACGCAACTGTTACAGCTGCATAAATGTTCTCAGTGAAGATCAAAAGCTACTCCTGGAACTCTTGGACAAAGTACCTGATGAACATATCAGAGAAACAATTCTCAAACAACTCCGTAACTCTTTCAAGAAAGAAGTTAAAGATGAAAAGAAGAAAAGAACTACTGACATCCTAGACATCACCCCAATAACAATCAATGATGTATTGGGAAAAATCAGTATCAAAATAGAAGTCTCAATGCAAGACCTACAATTTGAAATCAACAACCTAAAGGAAGAAGTTTCAAACCTCAGAAGAGAGTTAAGAAAAGAACTAACTAAGGTAAATTCTGAAGTAGCCATACTAAGAAAAGGAAAACAAAAGGTAGTAGAAATTCAAGAACCACAGGTCTCAGTTGATGAACAGCTGATATCAATCGATGACTATCTCTCGGATTCTGATTTCACACTGGTGGTCAGACCAAGAGGAAGAACATCTCCTGGCATAAGCTTAAGGGAACCTCTAGAGTCATCGACTCCGACTCAAACTCCACCACAGCCATCGGCCAACCTTACCCGTCAGAGAAGACGACATGTCTCTCCGACAACGTGTGTACAAAGCTCTAGAAGAGCACCTTCAGTGACTCCCTCTCAACAGGGATCCTCATCAAGAGTTACACCAACTCCGTCTCAACCTTCTACGTCTCATAGACCAACAACCTTTGCGACAACCGTCGTTCCACAACAAAGGTTTGTACCTCGACTAGAGGTGAAAACCTATTTTGAAAACTCCAGTCAACTCTTTGAACCGGTTATTGAACAAGAATTCGAAGGAGAATCCATAGTCTCAATTATCAAAACCATTTTTCCAGAAGGTTTTCTGTTCATCCCAGAAGACCCTCTAAAGACCAGAAAATTTTACGAGCTGATCTTAATCGACACCAAATTTGTTGAGATCACTCATATTCCAGATAGAGATGATCTATCTAGGATCGCATTCTCTAAAATAAAGATTTTCAAAGTCCTGACTCCAACCGATTGGTATCAGAGCCAATAA

Coding sequence (CDS)

ATGTATAATGTCAATCCAACGTCGCAAGCTCAATCGCAAAGACACAAGAAAAGTCAAAGAAAAATCAAAAGATACTCTAACAGAAAGAAGGTTCCGTATGCTCCGCCTACAACATACAGAGAACATAGTGACTCAAAAAGGAAGATTTCTAGAAAAGATGGGAAGAGACCTCAATCCCATTATGAGAAGGCACGAAGAGGATCTAATAAGCAAGTCCAGTGCTACAAGTGTAAGAAGTTTGAGCATTATTCAATTAAATGCCCATTAAAGGGAAGAATCAACGAACTAAACATTGATGAAGAATTCAAGAAAGAATTACTCATGGCATTCGGTTCGGATTCTAGCAGCAATTCAGAAAGCACTAACGACGATATCCACGAACTAAGAGAAGAATCAGATACTTATTCCTCAGAAGAAGGAGAAATACATGATCTTGAATGTCAGGGAGGACGGCTACGCAACTGTTACAGCTGCATAAATGTTCTCAGTGAAGATCAAAAGCTACTCCTGGAACTCTTGGACAAAGTACCTGATGAACATATCAGAGAAACAATTCTCAAACAACTCCGTAACTCTTTCAAGAAAGAAGTTAAAGATGAAAAGAAGAAAAGAACTACTGACATCCTAGACATCACCCCAATAACAATCAATGATGTATTGGGAAAAATCAGTATCAAAATAGAAGTCTCAATGCAAGACCTACAATTTGAAATCAACAACCTAAAGGAAGAAGTTTCAAACCTCAGAAGAGAGTTAAGAAAAGAACTAACTAAGGTAAATTCTGAAGTAGCCATACTAAGAAAAGGAAAACAAAAGGTAGTAGAAATTCAAGAACCACAGGTCTCAGTTGATGAACAGCTGATATCAATCGATGACTATCTCTCGGATTCTGATTTCACACTGGTGGTCAGACCAAGAGGAAGAACATCTCCTGGCATAAGCTTAAGGGAACCTCTAGAGTCATCGACTCCGACTCAAACTCCACCACAGCCATCGGCCAACCTTACCCGTCAGAGAAGACGACATGTCTCTCCGACAACGTGTGTACAAAGCTCTAGAAGAGCACCTTCAGTGACTCCCTCTCAACAGGGATCCTCATCAAGAGTTACACCAACTCCGTCTCAACCTTCTACGTCTCATAGACCAACAACCTTTGCGACAACCGTCGTTCCACAACAAAGGTTTGTACCTCGACTAGAGGTGAAAACCTATTTTGAAAACTCCAGTCAACTCTTTGAACCGGTTATTGAACAAGAATTCGAAGGAGAATCCATAGTCTCAATTATCAAAACCATTTTTCCAGAAGGTTTTCTGTTCATCCCAGAAGACCCTCTAAAGACCAGAAAATTTTACGAGCTGATCTTAATCGACACCAAATTTGTTGAGATCACTCATATTCCAGATAGAGATGATCTATCTAGGATCGCATTCTCTAAAATAAAGATTTTCAAAGTCCTGACTCCAACCGATTGGTATCAGAGCCAATAA

Protein sequence

MYNVNPTSQAQSQRHKKSQRKIKRYSNRKKVPYAPPTTYREHSDSKRKISRKDGKRPQSHYEKARRGSNKQVQCYKCKKFEHYSIKCPLKGRINELNIDEEFKKELLMAFGSDSSSNSESTNDDIHELREESDTYSSEEGEIHDLECQGGRLRNCYSCINVLSEDQKLLLELLDKVPDEHIRETILKQLRNSFKKEVKDEKKKRTTDILDITPITINDVLGKISIKIEVSMQDLQFEINNLKEEVSNLRRELRKELTKVNSEVAILRKGKQKVVEIQEPQVSVDEQLISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTTCVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFENSSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIPDRDDLSRIAFSKIKIFKVLTPTDWYQSQ

Homology

[Close]

BLAST of Tan0018658.1 vs. NCBI nr
Match: KAA0032916.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 4.1e-20
Identity = 81/206 (39.32%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 288 ISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTT 347
           +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R       PTT
Sbjct: 1   MSAENYAMDLQFEQVSRRR----QGSAQRTLTIQSDSSSLPPIPSTELLRPS----GPTT 60

Query: 348 CVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFEN 407
              S+ RA S  P    S S +   PS  S   RP  F           PR  +  YF N
Sbjct: 61  ---SNMRAAS--PDASSSRSAIPRNPSSYSQIVRPKIFQ----------PRPPINGYFTN 120

Query: 408 SSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIP 467
           ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+K  EITH+P
Sbjct: 121 TT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVP 180

Query: 468 DRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           D++D S+I +SK++IF+VLTP+ W Q
Sbjct: 181 DKNDPSKIIYSKLRIFRVLTPSYWKQ 182

[Close]

BLAST of Tan0018658.1 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-19
Identity = 78/215 (36.28%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 279 PQVSVDEQLISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQ 338
           P  S     +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R 
Sbjct: 46  PSQSSAPSPMSAENYAMDLQFEQVSRRR----QGSAKRTLTIQSDSSSLPPIPSTELLRP 105

Query: 339 RRRHVSPTTCVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPR 398
                 PTT        P+   +  G+SS  +  P  PS+        + +V  + F PR
Sbjct: 106 S----GPTT--------PNKRAASPGASSSRSAIPRNPSS-------YSQIVRPKIFQPR 165

Query: 399 LEVKTYFENSSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDT 458
             +  YF  ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+
Sbjct: 166 PPINGYFTKTT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDS 225

Query: 459 KFVEITHIPDRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           K  EITH+PD++D S+I +SK++IF+VLTP+ W Q
Sbjct: 226 KSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQ 236

[Close]

BLAST of Tan0018658.1 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-19
Identity = 80/206 (38.83%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 288 ISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTT 347
           +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R       PTT
Sbjct: 1   MSAENYAMDLQFEQVSRRR----QGSAQRTLTIQSDSSSLPPIPSTELLRPS----GPTT 60

Query: 348 CVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFEN 407
              S+ RA S  P    S S +   PS  S   RP  F           PR  +  YF  
Sbjct: 61  ---SNMRAAS--PDASSSRSAIPRNPSSYSQIVRPKIFQ----------PRPPINGYFTK 120

Query: 408 SSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIP 467
           ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+K  EITH+P
Sbjct: 121 TT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVP 180

Query: 468 DRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           D++D S+I +SK++IF+VLTP+ W Q
Sbjct: 181 DKNDPSKIIYSKLRIFRVLTPSYWKQ 182

[Close]

BLAST of Tan0018658.1 vs. NCBI nr
Match: KAA0032923.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-19
Identity = 80/206 (38.83%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 288 ISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTT 347
           +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R       PTT
Sbjct: 1   MSAENYAMDLQFEQVSRRR----QGSAQRTLTIQSDSSSLPPIPSTELLRPS----GPTT 60

Query: 348 CVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFEN 407
              S+ RA S  P    S S +   PS  S   RP  F           PR  +  YF  
Sbjct: 61  ---SNMRAAS--PDASSSRSAIPRNPSSYSQIVRPKIFQ----------PRPPINGYFTK 120

Query: 408 SSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIP 467
           ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+K  EITH+P
Sbjct: 121 TT-IVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVP 180

Query: 468 DRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           D++D S+I +SK++IF+VLTP+ W Q
Sbjct: 181 DKNDPSKIIYSKLRIFRVLTPSYWKQ 182

[Close]

BLAST of Tan0018658.1 vs. NCBI nr
Match: KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-19
Identity = 78/215 (36.28%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 279 PQVSVDEQLISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQ 338
           P  S     +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R 
Sbjct: 46  PSQSSAPSPMSAENYAMDLQFEQVSRRR----QGSAKRTLTIQSDSSSLPPIPSTALLRP 105

Query: 339 RRRHVSPTTCVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPR 398
                 PTT        P+   +  G+SS  +  P  PS+        + +V  + F PR
Sbjct: 106 S----GPTT--------PNKRAASPGASSSRSAIPRNPSS-------YSQIVRPKIFQPR 165

Query: 399 LEVKTYFENSSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDT 458
             +  YF  ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+
Sbjct: 166 PPINGYFTKTT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDS 225

Query: 459 KFVEITHIPDRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           K  EITH+PD++D S+I +SK++IF+VLTP+ W Q
Sbjct: 226 KSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQ 236

[Close]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL
Match: A0A5A7SS94 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003480 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-20
Identity = 81/206 (39.32%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 288 ISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTT 347
           +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R       PTT
Sbjct: 1   MSAENYAMDLQFEQVSRRR----QGSAQRTLTIQSDSSSLPPIPSTELLRPS----GPTT 60

Query: 348 CVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFEN 407
              S+ RA S  P    S S +   PS  S   RP  F           PR  +  YF N
Sbjct: 61  ---SNMRAAS--PDASSSRSAIPRNPSSYSQIVRPKIFQ----------PRPPINGYFTN 120

Query: 408 SSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIP 467
           ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+K  EITH+P
Sbjct: 121 TT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVP 180

Query: 468 DRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           D++D S+I +SK++IF+VLTP+ W Q
Sbjct: 181 DKNDPSKIIYSKLRIFRVLTPSYWKQ 182

[Close]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL
Match: A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.8e-20
Identity = 78/215 (36.28%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 279 PQVSVDEQLISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQ 338
           P  S     +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R 
Sbjct: 46  PSQSSAPSPMSAENYAMDLQFEQVSRRR----QGSAKRTLTIQSDSSSLPPIPSTELLRP 105

Query: 339 RRRHVSPTTCVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPR 398
                 PTT        P+   +  G+SS  +  P  PS+        + +V  + F PR
Sbjct: 106 S----GPTT--------PNKRAASPGASSSRSAIPRNPSS-------YSQIVRPKIFQPR 165

Query: 399 LEVKTYFENSSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDT 458
             +  YF  ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+
Sbjct: 166 PPINGYFTKTT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDS 225

Query: 459 KFVEITHIPDRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           K  EITH+PD++D S+I +SK++IF+VLTP+ W Q
Sbjct: 226 KSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQ 236

[Close]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL
Match: A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.8e-20
Identity = 80/206 (38.83%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 288 ISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTT 347
           +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R       PTT
Sbjct: 1   MSAENYAMDLQFEQVSRRR----QGSAQRTLTIQSDSSSLPPIPSTELLRPS----GPTT 60

Query: 348 CVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFEN 407
              S+ RA S  P    S S +   PS  S   RP  F           PR  +  YF  
Sbjct: 61  ---SNMRAAS--PDASSSRSAIPRNPSSYSQIVRPKIFQ----------PRPPINGYFTK 120

Query: 408 SSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIP 467
           ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+K  EITH+P
Sbjct: 121 TT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVP 180

Query: 468 DRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           D++D S+I +SK++IF+VLTP+ W Q
Sbjct: 181 DKNDPSKIIYSKLRIFRVLTPSYWKQ 182

[Close]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.8e-20
Identity = 80/206 (38.83%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 288 ISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQRRRHVSPTT 347
           +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R       PTT
Sbjct: 1   MSAENYAMDLQFEQVSRRR----QGSAQRTLTIQSDSSSLPPIPSTELLRPS----GPTT 60

Query: 348 CVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPRLEVKTYFEN 407
              S+ RA S  P    S S +   PS  S   RP  F           PR  +  YF  
Sbjct: 61  ---SNMRAAS--PDASSSRSAIPRNPSSYSQIVRPKIFQ----------PRPPINGYFTK 120

Query: 408 SSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDTKFVEITHIP 467
           ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+K  EITH+P
Sbjct: 121 TT-IVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVP 180

Query: 468 DRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           D++D S+I +SK++IF+VLTP+ W Q
Sbjct: 181 DKNDPSKIIYSKLRIFRVLTPSYWKQ 182

[Close]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-19
Identity = 78/215 (36.28%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 279 PQVSVDEQLISIDDYLSDSDFTLVVRPRGRTSPGISLREPLESSTPTQTPPQPSANLTRQ 338
           P  S     +S ++Y  D  F  V R R     G + R     S  +  PP PS  L R 
Sbjct: 46  PSQSSAPSPMSAENYAMDLQFEQVSRRR----QGSAKRTLTIQSDSSSLPPIPSTALLRP 105

Query: 339 RRRHVSPTTCVQSSRRAPSVTPSQQGSSSRVTPTPSQPSTSHRPTTFATTVVPQQRFVPR 398
                 PTT        P+   +  G+SS  +  P  PS+        + +V  + F PR
Sbjct: 106 S----GPTT--------PNKRAASPGASSSRSAIPRNPSS-------YSQIVRPKIFQPR 165

Query: 399 LEVKTYFENSSQLFEPVIEQEFEGESIVSIIKTIFPEGFLFIPEDPLKTRKFYELILIDT 458
             +  YF  ++ + +  IE EF+G S+  +   IFP GF F+PED  KTR FYE IL+D+
Sbjct: 166 PPINGYFTKTT-MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDS 225

Query: 459 KFVEITHIPDRDDLSRIAFSKIKIFKVLTPTDWYQ 494
           K  EITH+PD++D S+I +SK++IF+VLTP+ W Q
Sbjct: 226 KSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQ 236

The following BLAST results are available for this feature:

BLAST of Tan0018658.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018658.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032916.1	4.1e-20	39.32	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransp...	[more]
TYK28082.1	2.0e-19	36.28	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28077.1	2.0e-19	38.83	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032923.1	2.0e-19	38.83	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032918.1	3.5e-19	36.28	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SS94	2.0e-20	39.32	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DX32	9.8e-20	36.28	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DW87	9.8e-20	38.83	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P...	[more]
A0A5A7SR64	9.8e-20	38.83	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]
A0A5A7SQU5	1.7e-19	36.28	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Tan0018658.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 231..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..384
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..384
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 57..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0018658	Tan0018658	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018658.1-exon	Tan0018658.1-exon-LG03:3338354..3339211	exon
Tan0018658.1-exon	Tan0018658.1-exon-LG03:3343683..3344312	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018658.1-cds	Tan0018658.1-cds-LG03:3338354..3339211	CDS
Tan0018658.1-cds	Tan0018658.1-cds-LG03:3343683..3344312	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0018658.1	Tan0018658.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding