Tan0017891.1 (mRNA) Snake gourd v1

Overview


Name	Tan0017891.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Heavy metal transport/detoxification superfamily protein
Location	LG11: 2412763 .. 2413194 (-)
Sequence length	234
RNA-Seq Expression	Tan0017891.1
Synteny	Tan0017891.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATGTGGGTGTTTTTTCTGAGAGAAATTCTTGGAATTTGATTTCATAGTTCTAATGGATCTTTTGTATTTTTTTGGCCATATAGGTGGTGGAATTGAAGGTTTTTTTGCATTGTGAGGAGTGCATCAAGAAGATTCTCAAAGCCATCAAAAAAATTCAAGGTCTGTGTTCAATGTCTTGATCAATTTTCTCCTCTGGTTTAAGTTCAATAATGCTCAAATCAACGAGTCTTTAAGGGGTTTCTTTTCCCCTCTCTCTCTCTCTCTCCCCATTTGCAGATATAGAGACATATAATGTAGATATGCAGCTGAATAAGGTGATTGTTACAGGCAATGTCACTACAGAAGAAGTCATCAAAGTTCTTCAGAAAATTAGCAAGACAGCAATTCCATGGCAAGCTGATGAAGTCAACAACACCAATTACTAG

mRNA sequence

ATGGCTAATGTGGTGGAATTGAAGGTTTTTTTGCATTGTGAGGAGTGCATCAAGAAGATTCTCAAAGCCATCAAAAAAATTCAAGATATAGAGACATATAATGTAGATATGCAGCTGAATAAGGTGATTGTTACAGGCAATGTCACTACAGAAGAAGTCATCAAAGTTCTTCAGAAAATTAGCAAGACAGCAATTCCATGGCAAGCTGATGAAGTCAACAACACCAATTACTAG

Coding sequence (CDS)

ATGGCTAATGTGGTGGAATTGAAGGTTTTTTTGCATTGTGAGGAGTGCATCAAGAAGATTCTCAAAGCCATCAAAAAAATTCAAGATATAGAGACATATAATGTAGATATGCAGCTGAATAAGGTGATTGTTACAGGCAATGTCACTACAGAAGAAGTCATCAAAGTTCTTCAGAAAATTAGCAAGACAGCAATTCCATGGCAAGCTGATGAAGTCAACAACACCAATTACTAG

Protein sequence

MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIPWQADEVNNTNY

Homology

[Close]

BLAST of Tan0017891.1 vs. ExPASy Swiss-Prot
Match: Q84J88 (Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX=3702 GN=HIPP36 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-07
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 7   LKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIP 66
           L+V +HCE C +KI K + KI  + T N+D++  KV V GNV  E +IK + K  + A  
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRHAEL 93

Query: 67  WQADEVNNTN 77
           W     NN N
Sbjct: 94  WPTSMENNIN 103

[Close]

BLAST of Tan0017891.1 vs. ExPASy Swiss-Prot
Match: B3H6D0 (Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX=3702 GN=HIPP45 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-07
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  NVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISK 62
          ++VEL V + C+ C KK+ +AI K+  ++T  +D+   KV VTG V  EEV+K++++  +
Sbjct: 16 SIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGR 75

Query: 63 TAIPW 68
          TA  W
Sbjct: 76 TAEYW 80

[Close]

BLAST of Tan0017891.1 vs. ExPASy Swiss-Prot
Match: F4JZL7 (Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX=3702 GN=HIPP33 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 7  LKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +L KV V+GNV    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 WQADEVNNTN 77
          W A +  + N
Sbjct: 74 WGAPKGGSNN 83

[Close]

BLAST of Tan0017891.1 vs. ExPASy Swiss-Prot
Match: Q9M8K5 (Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX=3702 GN=HIPP32 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-05
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 7  LKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +  KV V+G+V    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSGKHAEI 73

Query: 67 WQADEVNN 75
          W A + NN
Sbjct: 74 WGAPKGNN 81

[Close]

BLAST of Tan0017891.1 vs. ExPASy Swiss-Prot
Match: Q94BT9 (Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-05
Identity = 22/70 (31.43%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          M+  V L+V + CE C+  + + + K++ +E+++VD++  KV V GNV  + V++ + K 
Sbjct: 1  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 60

Query: 61 SKTAIPWQAD 71
           K    W+A+
Sbjct: 61 GKKTAFWEAE 70

[Close]

BLAST of Tan0017891.1 vs. NCBI nr
Match: XP_004138408.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI
Sbjct: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 SKTAIPWQADEVNNTNY 78
           KTAIPWQ DE+NN NY
Sbjct: 61 RKTAIPWQDDELNNINY 77

[Close]

BLAST of Tan0017891.1 vs. NCBI nr
Match: XP_038884077.1 (copper transport protein ATX1 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 5.4e-28
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI
Sbjct: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTKEEVIKVLQKI 60

Query: 61 SKTAIPWQADEVNN 75
           KTAIPWQAD +NN
Sbjct: 61 RKTAIPWQADGLNN 74

[Close]

BLAST of Tan0017891.1 vs. NCBI nr
Match: KAE8646572.1 (hypothetical protein Csa_004951, partial [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 4  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKT 63
          VVELKVFLHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI KT
Sbjct: 1  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKT 60

Query: 64 AIPWQADEVNNTNY 78
          AIPWQ DE+NN NY
Sbjct: 61 AIPWQDDELNNINY 74

[Close]

BLAST of Tan0017891.1 vs. NCBI nr
Match: XP_022133451.1 (copper transport protein ATX1 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
           MANVVELKV LHCE+CIKKILKAIKKIQDIETYNVD QLNKV VTGNVTTEEVIKVL KI
Sbjct: 41  MANVVELKVGLHCEDCIKKILKAIKKIQDIETYNVDTQLNKVTVTGNVTTEEVIKVLHKI 100

Query: 61  SKTAIPWQADEVNN 75
           SKTAIPWQADEVNN
Sbjct: 101 SKTAIPWQADEVNN 114

[Close]

BLAST of Tan0017891.1 vs. NCBI nr
Match: XP_008456748.1 (PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          MANVVELKVFLHC+ECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI
Sbjct: 1  MANVVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 SKTAIPWQADEVNN 75
           KTA+PWQ DE+NN
Sbjct: 61 RKTAVPWQDDELNN 74

[Close]

BLAST of Tan0017891.1 vs. ExPASy TrEMBL
Match: A0A0A0K8N1 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-30
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI
Sbjct: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 SKTAIPWQADEVNNTNY 78
           KTAIPWQ DE+NN NY
Sbjct: 61 RKTAIPWQDDELNNINY 77

[Close]

BLAST of Tan0017891.1 vs. ExPASy TrEMBL
Match: A0A6J1BV52 (copper transport protein ATX1 OS=Momordica charantia OX=3673 GN=LOC111006024 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
           MANVVELKV LHCE+CIKKILKAIKKIQDIETYNVD QLNKV VTGNVTTEEVIKVL KI
Sbjct: 41  MANVVELKVGLHCEDCIKKILKAIKKIQDIETYNVDTQLNKVTVTGNVTTEEVIKVLHKI 100

Query: 61  SKTAIPWQADEVNN 75
           SKTAIPWQADEVNN
Sbjct: 101 SKTAIPWQADEVNN 114

[Close]

BLAST of Tan0017891.1 vs. ExPASy TrEMBL
Match: A0A1S3C423 (superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          MANVVELKVFLHC+ECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI
Sbjct: 1  MANVVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKI 60

Query: 61 SKTAIPWQADEVNN 75
           KTA+PWQ DE+NN
Sbjct: 61 RKTAVPWQDDELNN 74

[Close]

BLAST of Tan0017891.1 vs. ExPASy TrEMBL
Match: A0A5D3C2A2 (Superoxide dismutase 1 copper chaperone OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001360 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 4  VVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKT 63
          VVELKVFLHC+ECIKKILKAIKKIQDIETYNVDM++NKVIVTGNVT EEVIKVLQKI KT
Sbjct: 3  VVELKVFLHCDECIKKILKAIKKIQDIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKT 62

Query: 64 AIPWQADEVNN 75
          A+PWQ DE+NN
Sbjct: 63 AVPWQDDELNN 73

[Close]

BLAST of Tan0017891.1 vs. ExPASy TrEMBL
Match: A0A2N9J4M6 (HMA domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60308 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          M NVVELKV LHCEECIKKILKAIKK++DIETYNVD QLNKVIVTGN+TTEEVI+VLQKI
Sbjct: 1  MGNVVELKVGLHCEECIKKILKAIKKLEDIETYNVDTQLNKVIVTGNITTEEVIRVLQKI 60

Query: 61 SKTAIPWQADEVN 74
           K+A  W+ DE+N
Sbjct: 61 GKSASTWEGDEMN 73

[Close]

BLAST of Tan0017891.1 vs. TAIR 10
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-23
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MANVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKI 60
          MANVVELKV LHC+ECI+KILKAIKKI+DIE Y+VD QLNKV VTGNVT E+VI+VLQK+
Sbjct: 1  MANVVELKVNLHCDECIRKILKAIKKIEDIEAYDVDTQLNKVTVTGNVTEEQVIRVLQKV 60

Query: 61 SKTAIPWQAD 71
           K A+ W  D
Sbjct: 61 RKAAVKWDQD 70

[Close]

BLAST of Tan0017891.1 vs. TAIR 10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-08
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 7   LKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIP 66
           L+V +HCE C +KI K + KI  + T N+D++  KV V GNV  E +IK + K  + A  
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRHAEL 93

Query: 67  WQADEVNNTN 77
           W     NN N
Sbjct: 94  WPTSMENNIN 103

[Close]

BLAST of Tan0017891.1 vs. TAIR 10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.6e-08
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  NVVELKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISK 62
          ++VEL V + C+ C KK+ +AI K+  ++T  +D+   KV VTG V  EEV+K++++  +
Sbjct: 16 SIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGR 75

Query: 63 TAIPW 68
          TA  W
Sbjct: 76 TAEYW 80

[Close]

BLAST of Tan0017891.1 vs. TAIR 10
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 7  LKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +L KV V+GNV    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 WQADEVNNTN 77
          W A +  + N
Sbjct: 74 WGAPKGGSNN 83

[Close]

BLAST of Tan0017891.1 vs. TAIR 10
Match: AT5G19090.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 7  LKVFLHCEECIKKILKAIKKIQDIETYNVDMQLNKVIVTGNVTTEEVIKVLQKISKTAIP 66
          LKV +HC+ C +K+ K ++KI+ + T  +D +L KV V+GNV    +IK L K  K A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 WQADEVNNTN 77
          W A +  + N
Sbjct: 74 WGAPKGGSNN 83

The following BLAST results are available for this feature:

BLAST of Tan0017891.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J88	7.1e-07	41.43	Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX...	[more]
B3H6D0	9.2e-07	40.00	Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX...	[more]
F4JZL7	6.0e-06	40.00	Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX...	[more]
Q9M8K5	2.3e-05	39.71	Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX...	[more]
Q94BT9	3.9e-05	31.43	Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2	[more]

BLAST of Tan0017891.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138408.1	1.3e-29	90.91	protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus]	[more]
XP_038884077.1	5.4e-28	91.89	copper transport protein ATX1 [Benincasa hispida]	[more]
KAE8646572.1	9.1e-28	90.54	hypothetical protein Csa_004951, partial [Cucumis sativus]	[more]
XP_022133451.1	9.1e-28	93.24	copper transport protein ATX1 [Momordica charantia]	[more]
XP_008456748.1	9.1e-28	89.19	PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo]	[more]

BLAST of Tan0017891.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N1	6.2e-30	90.91	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV...	[more]
A0A6J1BV52	4.4e-28	93.24	copper transport protein ATX1 OS=Momordica charantia OX=3673 GN=LOC111006024 PE=...	[more]
A0A1S3C423	4.4e-28	89.19	superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 ...	[more]
A0A5D3C2A2	3.2e-26	88.73	Superoxide dismutase 1 copper chaperone OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A2N9J4M6	1.1e-23	80.82	HMA domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60308 PE=4...	[more]

BLAST of Tan0017891.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05365.1	2.5e-23	74.29	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	5.0e-08	41.43	Heavy metal transport/detoxification superfamily protein	[more]
AT3G56891.1	6.6e-08	40.00	Heavy metal transport/detoxification superfamily protein	[more]
AT5G19090.1	4.3e-07	40.00	Heavy metal transport/detoxification superfamily protein	[more]
AT5G19090.2	4.3e-07	40.00	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 8..62 e-value: 3.0E-11 score: 43.6
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 11..66 score: 9.296249
None	No IPR available	GENE3D	3.30.70.100		coord: 2..65 e-value: 1.2E-14 score: 56.2
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 2..68
None	No IPR available	PANTHER	PTHR22814:SF297	HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN	coord: 2..68
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 4..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0017891	Tan0017891	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017891.1-cds	Tan0017891.1-cds-LG11:2412763..2412911	CDS
Tan0017891.1-cds	Tan0017891.1-cds-LG11:2413029..2413104	CDS
Tan0017891.1-cds	Tan0017891.1-cds-LG11:2413186..2413194	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017891.1-exon	Tan0017891.1-exon-LG11:2412763..2412911	exon
Tan0017891.1-exon	Tan0017891.1-exon-LG11:2413029..2413104	exon
Tan0017891.1-exon	Tan0017891.1-exon-LG11:2413186..2413194	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0017891.1	Tan0017891.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding