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Tan0016152.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACACAGAAGGAACGAAGCTGGAATCGCACAAGGGGGCGCAGAGAGAGAAGAAGGTTCGTTTCAATTTCCTCTGTGTTACGGTCCTCTGCTGGTTTTAATTTGATCTTCGTTTCTCGAAACCTATACAATGTTAGATTAGGGTTAGGATTTTTAGTTCCCTATTTACCAGTCCTGCTCAAGCTGTTCGAGGATTTGGCTTTCTTTTTTCTATCGTTTTCGCCTAGGGTTTTTGGAAGTTATGTGTTCGTGTTAATCCTCTTTTCTTTGGAAAAGAAAAGAAAATAGTTTAAACTAAGTTTGATGTATTTGTGTTAGTGTGTTAAATGGAACTTAACTGGATCGATGTTACACATCTACTAATTTTGTATTTTGTGATATCCAGAACATAAATGAAGTTTATTTTTCTTTGGTTTGAATTTGCTAACTCAAATCATTGAGCAGGTAAGCCATGAAGCACAACAATGTTATCCCTAGTGGGCACTTCAGGAAACATTGGCAAAATTATGTTAAAACTTGGTTCAACCAACCTGCTCGGAAAACAAGGAGAAGGAATGGTGAGTACTTGGGGTTTCTGTTAGTTCATCGTGGTTAAATGTTGTATTGTATTGGATTGTTCTAACTGATATTTATTTCTCTTATGTAAATCGTCACTAGCTCGTCAGGAAAAGGCTGTGAAAACTTTCCCTCGGCCTACTGCTGGACCACTTCGACCTATTGTTCATGGACAGACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAATTGAAGGTGGGATTATTTTTCAGCTTTTGGAATATTTTGGATGACGTGCAATTATAATTCAGTTAATTCTGTGTTTCGTTTTTTTTTTGACAGATGAATTATTGAAACTGCATCATCATTTTTTTTAAGTATAAACGAACTGGAGTTTTATTTGAAAGCCTTTTTTTTTGCTCGGGCTATGTACTTGGTAAAATTGATTTTTTGGAAGTCTTGCAAGCATGACATGGTGTTTTTAAGTTAAATTTTCAGAATATAAGCACGGTTGTGGATGTCGATTAATGCATATCTTATTGATAGACCCTGATTACATAGGTGTATGAGAGATGGGAACTCTCAAATTGCTGTTGTAGATAAATAAAATTGAGGCTTAGGCCTATCATTTATCTAGAGCATACTAGAGTTGAGTGTCGAATTCAAGAAAATGTTGAACATTTGATGATCATTTGGATTCAAACCATTCCTCTTTCGATTTTTTTCAAAGATTGTTGACAATTTTTTTCGCAAACCAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGGAACCGCTCCCTGGAGAGTCTTCAAGCTAATGTACAGAGGTTGAAGACCTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAATTCAAGGTAACTCTTCCAAGTTCCAACTGTCAAAGTAATACCATTCATTAGTTGCACCATCTTTTTTATTTGTTGGGCTGCCTTGATCTCTGATCAAACATATATCTGTTGATGTAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCTACCCAGGTCCAGGGCTCTTACATGTCTATTGGACTAGAGAAGCCATCAGTTGAGCTTGTGAAGGTCACAGAAGAGATGAAATCTTTCAAGGCCTATGACAAGCTTCGTATTGAACGAACGAACGCCCGCCATGTTGGTGCTCGGTTGAAGAAGGCTGCCGAAGCAGAGAAGGAAGAGAAGAAGTAAATGGTTCCAAGGTTTTTAACTGCGGCGCCTATATGTTTTGAATGAAAATTCAAGTTTGCTATAGTGTTCGGCATTTATATTTAGTATCTTTTTCCCTGCTTTATATGTGCAAACCTGAGTTATGAGTTCAATTTTGAAATGATTAGAGATTTTTTTAAAGATGAATATCGAACATTCTCGGATTTCATAGATGTTGCCTCTTTTTGCTTCTTATTCATGCGTTTTTGAGAGGTTATTTTGTGACTGAAATATATTTTTAGTCCCTACGTTTTGGGGTGGTTCATAT ACACAGAAGGAACGAAGCTGGAATCGCACAAGGGGGCGCAGAGAGAGAAGAAGGTAAGCCATGAAGCACAACAATGTTATCCCTAGTGGGCACTTCAGGAAACATTGGCAAAATTATGTTAAAACTTGGTTCAACCAACCTGCTCGGAAAACAAGGAGAAGGAATGCTCGTCAGGAAAAGGCTGTGAAAACTTTCCCTCGGCCTACTGCTGGACCACTTCGACCTATTGTTCATGGACAGACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAATTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGGAACCGCTCCCTGGAGAGTCTTCAAGCTAATGTACAGAGGTTGAAGACCTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAATTCAAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCTACCCAGGTCCAGGGCTCTTACATGTCTATTGGACTAGAGAAGCCATCAGTTGAGCTTGTGAAGGTCACAGAAGAGATGAAATCTTTCAAGGCCTATGACAAGCTTCGTATTGAACGAACGAACGCCCGCCATGTTGGTGCTCGGTTGAAGAAGGCTGCCGAAGCAGAGAAGGAAGAGAAGAAGTAAATGGTTCCAAGGTTTTTAACTGCGGCGCCTATATGTTTTGAATGAAAATTCAAGTTTGCTATAGTGTTCGGCATTTATATTTAGTATCTTTTTCCCTGCTTTATATGTGCAAACCTGAGTTATGAGTTCAATTTTGAAATGATTAGAGATTTTTTTAAAGATGAATATCGAACATTCTCGGATTTCATAGATGTTGCCTCTTTTTGCTTCTTATTCATGCGTTTTTGAGAGGTTATTTTGTGACTGAAATATATTTTTAGTCCCTACGTTTTGGGGTGGTTCATAT ATGAAGCACAACAATGTTATCCCTAGTGGGCACTTCAGGAAACATTGGCAAAATTATGTTAAAACTTGGTTCAACCAACCTGCTCGGAAAACAAGGAGAAGGAATGCTCGTCAGGAAAAGGCTGTGAAAACTTTCCCTCGGCCTACTGCTGGACCACTTCGACCTATTGTTCATGGACAGACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAATTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGGAACCGCTCCCTGGAGAGTCTTCAAGCTAATGTACAGAGGTTGAAGACCTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAATTCAAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCTACCCAGGTCCAGGGCTCTTACATGTCTATTGGACTAGAGAAGCCATCAGTTGAGCTTGTGAAGGTCACAGAAGAGATGAAATCTTTCAAGGCCTATGACAAGCTTCGTATTGAACGAACGAACGCCCGCCATGTTGGTGCTCGGTTGAAGAAGGCTGCCGAAGCAGAGAAGGAAGAGAAGAAGTAA MKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKVTEEMKSFKAYDKLRIERTNARHVGARLKKAAEAEKEEKK Homology
BLAST of Tan0016152.1 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 1.8e-94 Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1) HSP 1 Score: 341.3 bits (874), Expect = 7.8e-93 Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 5.0e-92 Identity = 169/206 (82.04%), Postives = 187/206 (90.78%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 6.6e-92 Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 7.5e-80 Identity = 151/206 (73.30%), Postives = 171/206 (83.01%), Query Frame = 0
BLAST of Tan0016152.1 vs. NCBI nr
Match: XP_022958723.1 (60S ribosomal protein L13-3-like [Cucurbita moschata]) HSP 1 Score: 394.4 bits (1012), Expect = 5.9e-106 Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Tan0016152.1 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]) HSP 1 Score: 393.7 bits (1010), Expect = 1.0e-105 Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Tan0016152.1 vs. NCBI nr
Match: XP_004143667.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protein L13-3-like [Cucumis melo var. makuwa] >KGN50340.1 hypothetical protein Csa_000560 [Cucumis sativus]) HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105 Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Tan0016152.1 vs. NCBI nr
Match: XP_022929155.1 (60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical protein SDJN03_24090, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017097.1 hypothetical protein SDJN02_22209 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105 Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Tan0016152.1 vs. NCBI nr
Match: XP_022995473.1 (60S ribosomal protein L13-3-like [Cucurbita maxima] >XP_023532397.1 60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105 Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy TrEMBL
Match: A0A6J1H3W1 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111459864 PE=3 SV=1) HSP 1 Score: 394.4 bits (1012), Expect = 2.9e-106 Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy TrEMBL
Match: A0A1S3CTG8 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 4.9e-106 Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy TrEMBL
Match: A0A5A7UNR2 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00250 PE=3 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106 Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy TrEMBL
Match: A0A0A0KKX2 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106 Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Tan0016152.1 vs. ExPASy TrEMBL
Match: A0A6J1ETG8 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106 Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Tan0016152.1 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 ) HSP 1 Score: 346.7 bits (888), Expect = 1.3e-95 Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Tan0016152.1 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 ) HSP 1 Score: 346.7 bits (888), Expect = 1.3e-95 Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Tan0016152.1 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 ) HSP 1 Score: 346.7 bits (888), Expect = 1.3e-95 Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Tan0016152.1 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein ) HSP 1 Score: 341.3 bits (874), Expect = 5.5e-94 Identity = 169/206 (82.04%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Tan0016152.1 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 ) HSP 1 Score: 340.1 bits (871), Expect = 1.2e-93 Identity = 170/206 (82.52%), Postives = 188/206 (91.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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