Tan0013750.6 (mRNA) Snake gourd v1

Overview


Name	Tan0013750.6
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase MARCH2-like isoform X1
Location	LG07: 3878214 .. 3882876 (+)
Sequence length	1749
RNA-Seq Expression	Tan0013750.6
Synteny	Tan0013750.6

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAGAATAAGAATTTCAACCGCAATGAACACAATAAAAAAAGACAGGATATTTCATAGGAATAATTCAAGAAAGTTCTCATTTGTCTTTTTATTTTTTATTTTTTATTTTTTTCTGTAAGTTGGAAAAAATAAATCAAAGGGGTCGGGTCTCTTTCGATGTGGGAGTGAGATTTGGCGCCTGAATTGCTAAAGCAATATCCTTGTGTTTGTTGAAAGCCATCAAATTACGTGGATCCATATACTCTTCTCATAAATACGTAATTTCCTTGCGTATATAAATTTGGTTTTTCTTTTCTTCTTCTTTGTTTTTCAGTTCATTCAGCGTCTAATCCATTTTTTTTTTATCTCACAAGACTAATCAACCAGTATTCACGACGCAATTTCAGAACCCATTTTTTCTTTGCTTTTCAATTCTCACCTAAAAAAGAGAAAAGTTGGGTTGAAAATTGAAATTGAAATTTTCTCTGTTCATTTTTTCCCATTTTCAGCTCTCTTTCTACTCTGCTTCAACTGTAGAATCTTCAATCCGTCAAATCTAAGTCTACCCAGGTACGACCCCTTTTGATTCTATTCGCTTTTGTTCTCGATTTTGCTACTGTTCTCTCTGTTAACCTCGTTTGTGATTTTGTTCTCGATTGCTGTGTGTAATGCAATTGTTTCGATGGGCTTTTGTGGCTCAGTCGTTTAATTTGTTTGGACTGATTGAAGTTTGGTTGGAGAAAATTATTTCGCTTCAATTTGTTTGGTGGGCTTGGATTTCTGAAATTGGGTTTTGTGAATTGAGGCTGGTTCGTGATTTTCGCTTTGTTTTGGAGTGAATTTTTAAGTTCAATTGTGACATGTAATGCAAATTTTGATTGTATTTGTGTCTCAGTTGTTTGTTTGGACTGGGAGAAATTTTGATAGGTGGAGATTTGGCTTCAATTGGTTGGTGGGTTTGTTTCTCTCTTTATTTCTTTTTCTTTACTGGTGTTGTGGGATGAAGACTGAGTTAAAGAAACTTTGTATTCAATTTAGGGTGAGAGAAATTGGAGAAAGGGATGATGCTCAGAAATGTCAGCTAAGGAATTTTGTTCAATTGATTCAAGTTTGTGGAGTTTGGAATTTGAATGACCTTTCAAAGATGACGGATTGCCATTCGAACGATCCAAAGGCCAACACCATTGCCAATCAGAACGATGAAACCGACCTTGAGAAGCAGAGGGTTGCTCAGCCATTAGCATCAGAGCCCTCTACCAGTGATGCTGATGATCATACACCATTGACAATTGTTGTTTCTAATGGGGAGCCCAAATCAATCTCTGAGGTTCCTGGGACTCCTCAAGAGGAATTATTGCCTTGTGCTGTTTCCCCCAAAAAGGAGCTCTTGTCTACAACTTCTAGTTCTGATGAGCAGTGCAGGTACATTTGAAATGCTGCTTTTCCCTGAAAAAGGCTTTTCTAGTTGTTCTGTTCATTTCTGTTGGTCCATTTTGGCATCACTTTTAGTTAGTTCCTCCTCCTTCCTCCTCTCTTCCTCATCTTGTTGTTATTTATGTTGTTTGTTTCATTGCTTGTCAGCCATAAAACATTAGATAGTCCCAACTTTGATTGCTGAAAATTGATGCTTTCTATGGTTTGTTAAATCACCAATGAATCCAAAAGATTAATCCGAGAGTCAAATATGTGATCTATTAATGTAAATTTTTTTTCTTTTGCTGGGGTTGATATCATGTTGAACTATGATTAAATCTAAAAGTTTTAGTTGATGGGATATATTTACTTTTTTTATACATAGTCTAAGACTAAAACCATCAACATGAGTATAACTCAACAGGTAAGGCATATACTCCTTAGAGGTTTAAGTCTCCACCCCTACATTTGTTGCACTAACGAAATCGTAATGCTATTACTTCTTCTTTTGGAAATCTTACCTAAGTTGTACATTATAAATAACAGTTTTTAAATACTGTTGTCTTTCCATGTAATTTGCATTATAATGGAGTATGTCCACAGTTACCATTGGCTTCATTTATCTGGTTAATGTGTTGTAAAGGAAGTTGAGGCCATTAAGCCTGAGTACTATTATTCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGTAAGTTAGTCTTTTTGAGGATGACATTCATTGACTCAACAGAATCATAGTGGAGGCATTTTGAAATGCTATTTTGCTAACTTTTGCAGGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGGTGTAGGTATTCTGTAGCTTTCGGTGGCAATGCTTTTGATTAGTACTTTTCAATTCCTAGCCTCTTCCATCTTTATTAACTCTAATTGTAAAACTTATAAAATCAAACGCCTCAATGAATATTGAATCAGTATTTTTGTCCTGACTACAGTGTTAGTGTTATTAGTTGATGATCAACATCAGTGTCTTAGTTTTGCATTTGCTACAGTCCCAATAACCATTTGGTTTTTTTTGAAAATTGTGCTTGTTTTCTCATCATTTCTCTACAATTTTCTACAATTGCTTTCATCTTTCTTAAAAAACTATTGAATTCTTAGCAAAATTTCAAAAACAAAAATAAGTTTTTGAAAAATACAGGTAAAAAGTGGATAACAAAACAAGGAAACCCCGAGGTGGAACTAGTATTTATAGGCTTAATTGTCAAAAACCAAATGGTTATTTAAACAGGGCCTACATTTTCTTGCACTTCCATTTCCCACATTAGGAAAATTCTATCATGGCATTTTCATCTCTAATCTTTGCTTATGAGTATTCCTTTAATTTTGACCAAGATGACTTGAACCTATTCTCTCTAAGAACTTTGTTGTTTAGAAGGTCCTTTTTGACCACTAGGCCAAGTCATGGTGGTTGATGTGTCAAACATATAAAATTGCATTAGTGGATTAGTGGTTTATTCAGATTTGAATTGATATAGAAAAAAAGTATTGTAGGCTGAAAACAACTGGTTTATCATTCACAATGCTTCCTCTCCTCTCTAAACTTAGAAATGTTAGCTTTTTAATGAAATACCTTGATAAGAAAGAGGGAGGAGACGTGTAAAGTGGCAAGGAACCATTCACCCTCAAAACTATGTACAAACAAACCTAACTTCTGAACAACTAATTACATGGCTTTTAAAATTTGTTAAGGTTTTGTTTTGATCATGTTAGGGTACTAATAGGGATTTAGGGATAGTAGTAGTATGATATGGGTAATTAGTTAGGGAGTTAGTTAATGTTTGAACATTCTTTTTCGGCTCGCTTCGTTGCTTCATTGGTATGTTCTCCTTCCTCTTGTGGTGTTGCTTTTCCGACTCTGTCCTCGCCGGTGATTTCTCCCTCCTCCCTTTCGGAACAAGATAAACCAAGTATAAGACACTTGGAACCTCCCTTTTGAGTATGCTAACCCAACCCCTAAAAACCACTCAACAATTGCTTACCTTTCCCTCAATCCCACTCCCTCTATTTATAACCAAAAACACTAACTAACTCCCTAACTAACTCCCACTCCCTCTTGAGTATGCATACTCAAGAGGAAGGAGAACATACCAATGAAGCAACGAAGCGAGCCGAAAAAGAATGTTCAAACACTAACTAACTCCTTAACTAATTACCCTAATGCCCCTACTAATACCATACTACTACTATCCCTAAATCTCTATTAGTACCCTAACAGATCGAAAGATACGTTTTCTTTTGCTTTGTATCGTTGCTACCTATAAATTCAAACTATTGATTCGTGAGAATCGCCGCTTAAAACTATATATTTAGCATTAAACTTATGACCTTGATGGAAGGATATGGTATTGGAACTAACCTGAATTTCGATAATTCCTTATATTTGACAAGCACAGACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACTCAAGATACTGAAAGGGTAACAAGAATCTCACTTTTCCTGCTTGTTTCGTGAGTAGTCAAAAACATCAACCTTCTTCATAATTATTTATGCAGCAGCACTGTTTCAGTCCACTTTGGCTGGCTTTTGCCATCCTCATAGGAGGTCTCCTACTGGACATTCTTATATCCATCACCCTCGGCGTTTCGGCATTGCCCGTAAATATAATCATTGGTATGTTCATAACTTCTGTCGATCGAGCTATATCTAGTTTCGTGTTGTGCTTTTTTATGGTTATTGAAACCTTGAAGAACAGGAGTTATTGTTGTGCTTGGACTTGGAACTGTGTTTCGGCTTGCCCTGGAGTTCTTTCAGGAGTGGAATTCAACCAGAGGATCGCAAAGAGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTAAGTCTTTGACTGTTTGTTAAAAAAACATGATAAATAAATGAAGTGAAAATATATTTTTTATTCTTGTCTTTTCCCAGATGTATTAACCTCTTGATCAAACATATTAGTAATGGATATTGTGTTCTAATTGTAAATTTGACAATAAATTAGTAAATAGTTTTAGAGAGATTGCAAGTGATCAATAATAGAATATTATGTTTTGACAACGTTTTCTTAATTGTAAATTTTATATTCGTCAAAGTCGG

mRNA sequence

TGGAAGAATAAGAATTTCAACCGCAATGAACACAATAAAAAAAGACAGGATATTTCATAGGAATAATTCAAGAAAGTTCTCATTTGTCTTTTTATTTTTTATTTTTTATTTTTTTCTGTAAGTTGGAAAAAATAAATCAAAGGGGTCGGGTCTCTTTCGATGTGGGAGTGAGATTTGGCGCCTGAATTGCTAAAGCAATATCCTTGTGTTTGTTGAAAGCCATCAAATTACGTGGATCCATATACTCTTCTCATAAATACGTAATTTCCTTGCGTATATAAATTTGGTTTTTCTTTTCTTCTTCTTTGTTTTTCAGTTCATTCAGCGTCTAATCCATTTTTTTTTTATCTCACAAGACTAATCAACCAGTATTCACGACGCAATTTCAGAACCCATTTTTTCTTTGCTTTTCAATTCTCACCTAAAAAAGAGAAAAGTTGGGTTGAAAATTGAAATTGAAATTTTCTCTGTTCATTTTTTCCCATTTTCAGCTCTCTTTCTACTCTGCTTCAACTGTAGAATCTTCAATCCGTCAAATCTAAGTCTACCCAGGGTGAGAGAAATTGGAGAAAGGGATGATGCTCAGAAATGTCAGCTAAGGAATTTTGTTCAATTGATTCAAGTTTGTGGAGTTTGGAATTTGAATGACCTTTCAAAGATGACGGATTGCCATTCGAACGATCCAAAGGCCAACACCATTGCCAATCAGAACGATGAAACCGACCTTGAGAAGCAGAGGGTTGCTCAGCCATTAGCATCAGAGCCCTCTACCAGTGATGCTGATGATCATACACCATTGACAATTGTTGTTTCTAATGGGGAGCCCAAATCAATCTCTGAGGTTCCTGGGACTCCTCAAGAGGAATTATTGCCTTGTGCTGTTTCCCCCAAAAAGGAGCTCTTGTCTACAACTTCTAGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACTCAAGATACTGAAAGGCAGCACTGTTTCAGTCCACTTTGGCTGGCTTTTGCCATCCTCATAGGAGGTCTCCTACTGGACATTCTTATATCCATCACCCTCGGCGTTTCGGCATTGCCCGTAAATATAATCATTGGTATGTTCATAACTTCTGTCGATCGAGCTATATCTAGTTTCGTGTTGTGCTTTTTTATGGTTATTGAAACCTTGAAGAACAGGAGTTATTGTTGTGCTTGGACTTGGAACTGTGTTTCGGCTTGCCCTGGAGTTCTTTCAGGAGTGGAATTCAACCAGAGGATCGCAAAGAGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTAAGTCTTTGACTGTTTGTTAAAAAAACATGATAAATAAATGAAGTGAAAATATATTTTTTATTCTTGTCTTTTCCCAGATGTATTAACCTCTTGATCAAACATATTAGTAATGGATATTGTGTTCTAATTGTAAATTTGACAATAAATTAGTAAATAGTTTTAGAGAGATTGCAAGTGATCAATAATAGAATATTATGTTTTGACAACGTTTTCTTAATTGTAAATTTTATATTCGTCAAAGTCGG

Coding sequence (CDS)

ATGACGGATTGCCATTCGAACGATCCAAAGGCCAACACCATTGCCAATCAGAACGATGAAACCGACCTTGAGAAGCAGAGGGTTGCTCAGCCATTAGCATCAGAGCCCTCTACCAGTGATGCTGATGATCATACACCATTGACAATTGTTGTTTCTAATGGGGAGCCCAAATCAATCTCTGAGGTTCCTGGGACTCCTCAAGAGGAATTATTGCCTTGTGCTGTTTCCCCCAAAAAGGAGCTCTTGTCTACAACTTCTAGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACTCAAGATACTGAAAGGCAGCACTGTTTCAGTCCACTTTGGCTGGCTTTTGCCATCCTCATAGGAGGTCTCCTACTGGACATTCTTATATCCATCACCCTCGGCGTTTCGGCATTGCCCGTAAATATAATCATTGGTATGTTCATAACTTCTGTCGATCGAGCTATATCTAGTTTCGTGTTGTGCTTTTTTATGGTTATTGAAACCTTGAAGAACAGGAGTTATTGTTGTGCTTGGACTTGGAACTGTGTTTCGGCTTGCCCTGGAGTTCTTTCAGGAGTGGAATTCAACCAGAGGATCGCAAAGAGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTAAGTCTTTGA

Protein sequence

MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSISEVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFFMVIETLKNRSYCCAWTWNCVSACPGVLSGVEFNQRIAKSGIKCHYWVLSSYIVSL

Homology

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BLAST of Tan0013750.6 vs. NCBI nr
Match: XP_038875308.1 (E3 ubiquitin-protein ligase MARCHF2 isoform X3 [Benincasa hispida])

HSP 1 Score: 364.4 bits (934), Expect = 9.0e-97
Identity = 191/235 (81.28%), Postives = 201/235 (85.53%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLAS--EPSTSDADDHTPLTIVVSNGEPKS 60
           M+DCHSND KANT ANQN++ DLEKQRVAQP +S  E ST D DD+T LTIVVS GE K 
Sbjct: 1   MSDCHSNDVKANTGANQNNDGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKP 60

Query: 61  ISEVPGT----PQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGL 120
           ISEVPG      QE LLPC VSPKKELLSTTSSSDEQCRICQQEKEEVLIELGC+CRGGL
Sbjct: 61  ISEVPGVGTLCSQEGLLPCEVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCNCRGGL 120

Query: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHC 180
           AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQD +RQHC
Sbjct: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRQHC 180

Query: 181 FSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           FSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIG+ +      +    L FF
Sbjct: 181 FSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFF 235

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BLAST of Tan0013750.6 vs. NCBI nr
Match: XP_023534486.1 (E3 ubiquitin-protein ligase MARCH2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 2.0e-96
Identity = 183/229 (79.91%), Postives = 199/229 (86.90%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M+DCH ND K NT A++N+E DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KSIS
Sbjct: 1   MSDCHLNDVKGNTSADKNNEADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSIS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+EELLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREELLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ERQ  FSP+WL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERQRYFSPIWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVN+IIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNLIIGVIVVLGLGTVLRLALEFF 226

[Close]

BLAST of Tan0013750.6 vs. NCBI nr
Match: XP_038875306.1 (uncharacterized protein LOC120067793 isoform X1 [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-96
Identity = 187/216 (86.57%), Postives = 194/216 (89.81%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLAS--EPSTSDADDHTPLTIVVSNGEPKS 60
           M+DCHSND KANT ANQN++ DLEKQRVAQP +S  E ST D DD+T LTIVVS GE K 
Sbjct: 1   MSDCHSNDVKANTGANQNNDGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKP 60

Query: 61  ISEVPGT----PQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGL 120
           ISEVPG      QE LLPC VSPKKELLSTTSSSDEQCRICQQEKEEVLIELGC+CRGGL
Sbjct: 61  ISEVPGVGTLCSQEGLLPCEVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCNCRGGL 120

Query: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHC 180
           AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQD +RQHC
Sbjct: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRQHC 180

Query: 181 FSPLWLAFAILIGGLLLDILISITLGVSALPVNIII 211
           FSPLWLAFAILIGGLLLDILISITLGVSALPVNIII
Sbjct: 181 FSPLWLAFAILIGGLLLDILISITLGVSALPVNIII 216

[Close]

BLAST of Tan0013750.6 vs. NCBI nr
Match: XP_022995601.1 (E3 ubiquitin-protein ligase MARCH2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 3.4e-96
Identity = 183/229 (79.91%), Postives = 198/229 (86.46%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M+DCH ND K NT A +N+E DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KS+S
Sbjct: 1   MSDCHLNDVKGNTSAEKNNEADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSVS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+E+LLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREKLLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ERQ  FSPLWL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERQRYFSPLWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVNIIIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNIIIGVIVVLGLGTVLRLALEFF 226

[Close]

BLAST of Tan0013750.6 vs. NCBI nr
Match: KAG6605619.1 (hypothetical protein SDJN03_02936, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035530.1 hypothetical protein SDJN02_02326, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 2.2e-95
Identity = 182/229 (79.48%), Postives = 197/229 (86.03%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M DCH ND K NT A++N+  DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KSIS
Sbjct: 1   MLDCHLNDVKGNTSADKNNGADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSIS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+EELLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREELLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ERQ  FSP+WL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERQRYFSPIWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVN+IIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNLIIGVIVVLGLGTVLRLALEFF 226

[Close]

BLAST of Tan0013750.6 vs. ExPASy TrEMBL
Match: A0A6J1K2D4 (E3 ubiquitin-protein ligase MARCH2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491089 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.7e-96
Identity = 183/229 (79.91%), Postives = 198/229 (86.46%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M+DCH ND K NT A +N+E DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KS+S
Sbjct: 1   MSDCHLNDVKGNTSAEKNNEADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSVS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+E+LLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREKLLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ERQ  FSPLWL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERQRYFSPLWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVNIIIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNIIIGVIVVLGLGTVLRLALEFF 226

[Close]

BLAST of Tan0013750.6 vs. ExPASy TrEMBL
Match: A0A6J1H2W4 (E3 ubiquitin-protein ligase MARCH2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459604 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.8e-95
Identity = 182/229 (79.48%), Postives = 197/229 (86.03%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M DCH ND K NT A++N+  DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KSIS
Sbjct: 1   MLDCHLNDLKGNTSADKNNGADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSIS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+EELLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREELLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ERQ  FSP+WL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERQSYFSPIWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVN+IIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNLIIGVIVVLGLGTVLRLALEFF 226

[Close]

BLAST of Tan0013750.6 vs. ExPASy TrEMBL
Match: A0A6J1K8G6 (E3 ubiquitin-protein ligase MARCH2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491089 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 5.3e-95
Identity = 182/229 (79.48%), Postives = 199/229 (86.90%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M+DCH ND K NT A +N+E DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KS+S
Sbjct: 1   MSDCHLNDVKGNTSAEKNNEADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSVS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+E+LLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREKLLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ER++ FSPLWL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERRY-FSPLWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVNIIIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNIIIGVIVVLGLGTVLRLALEFF 225

[Close]

BLAST of Tan0013750.6 vs. ExPASy TrEMBL
Match: A0A6J1E3C4 (E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026101 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 5.3e-95
Identity = 184/234 (78.63%), Postives = 195/234 (83.33%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M++C SND K +TIAN +DE+DLEKQR AQP ASEPS SDADDHT LTIVVS GEPK +S
Sbjct: 1   MSECPSNDVKTSTIANSSDESDLEKQRGAQPSASEPSASDADDHTRLTIVVSTGEPKPVS 60

Query: 61  EVPGT-----PQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLA 120
           EVP T       EE  P  VSPKKELLS  SSSDEQCRICQQEKEE LIELGC CRGGLA
Sbjct: 61  EVPTTTATRLSHEEESPGIVSPKKELLSMASSSDEQCRICQQEKEEALIELGCQCRGGLA 120

Query: 121 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCF 180
           KAHRTCIDTWFRTKGSNRCEICQV+AANVSPPQSHHGTNYWIWRIDPTYRTQD ERQHCF
Sbjct: 121 KAHRTCIDTWFRTKGSNRCEICQVIAANVSPPQSHHGTNYWIWRIDPTYRTQDPERQHCF 180

Query: 181 SPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           SPLWLAFAILIGGLLLD+LISITLGVSALPVNIIIG+ +      +    L FF
Sbjct: 181 SPLWLAFAILIGGLLLDVLISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFF 234

[Close]

BLAST of Tan0013750.6 vs. ExPASy TrEMBL
Match: A0A6J1H4V9 (E3 ubiquitin-protein ligase MARCH2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459604 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.9e-94
Identity = 181/229 (79.04%), Postives = 197/229 (86.03%), Query Frame = 0


Query: 1   MTDCHSNDPKANTIANQNDETDLEKQRVAQPLASEPSTSDADDHTPLTIVVSNGEPKSIS 60
           M DCH ND K NT A++N+  DLEKQRV  P A++PSTSD DDHTPLTIVVSNGE KSIS
Sbjct: 1   MLDCHLNDLKGNTSADKNNGADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSIS 60

Query: 61  EVPGTPQEELLPCAVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120
           EV   P+EELLPCAVSP KELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT
Sbjct: 61  EV---PREELLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRT 120

Query: 121 CIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWL 180
           CIDTWFR+KGSNRCEICQVVAANVSPPQSHH TNYWIWRIDPTYRTQ+ ER + FSP+WL
Sbjct: 121 CIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERSY-FSPIWL 180

Query: 181 AFAILIGGLLLDILISITLGVSALPVNIIIGMFITSVDRAISSFVLCFF 230
           AFAILIGGLLLDIL+SITLG+SALPVN+IIG+ +      +    L FF
Sbjct: 181 AFAILIGGLLLDILVSITLGISALPVNLIIGVIVVLGLGTVLRLALEFF 225

[Close]

BLAST of Tan0013750.6 vs. TAIR 10
Match: AT2G45530.1 (RING/U-box superfamily protein )

HSP 1 Score: 229.2 bits (583), Expect = 4.2e-60
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 22  DLEKQRVAQPLASEP--STSDADDHTPLTIVVSNGEPKSISEVPGTPQEELLPCAVSPKK 81
           DLEKQ+  Q     P   +  A++   LTIVV NG+         + +EEL+   + P+K
Sbjct: 11  DLEKQQQQQQKDKSPQKQSESANESNHLTIVVCNGD---------SSREELVG-QIPPEK 70

Query: 82  EL-LSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQ 141
           E+ LS   SS EQCR+C Q+KEEVLIELGC CRGGLAKAHR+CID WFRTKGSN+CEICQ
Sbjct: 71  EVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQ 130

Query: 142 VVAANVSPPQSHHGTNYWIWRIDPTYRTQDTERQHCFSPLWLAFAILIGGLLLDILISIT 201
           VVA NV+PP++   TNYW+WRIDP+YR ++ ER  CFSPLW+AF+ILIGGL+LD+LISIT
Sbjct: 131 VVAVNVTPPETQPTTNYWVWRIDPSYRQEERER-GCFSPLWVAFSILIGGLMLDVLISIT 190

Query: 202 LGVSALPVNIIIGMFI 215
           LGVSALPVNIIIG+ +
Sbjct: 191 LGVSALPVNIIIGVIV 195

[Close]

BLAST of Tan0013750.6 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-11
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 85  TSSSDEQCRICQQEKEEV---LIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVA 144
           T+  ++ CRIC    E      IELGC C+  LA AHR C +TWF+ KG   CEICQ VA
Sbjct: 77  TAPPEKDCRICHLGVETSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVA 136

[Close]

BLAST of Tan0013750.6 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 6.2e-11
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 86  SSSDEQCRICQQE------KEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQV 145
           S S+  CRIC         +  V IELGC C+  LA AH+ C +TWF+ KG+  CE+C  
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

[Close]

BLAST of Tan0013750.6 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-09
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 89  DEQCRICQQEKEE-----VLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAAN 148
           DE+    ++E+EE     + ++LGC C+G L  AH  C +TWF+ KG+  CEIC  +A N
Sbjct: 110 DEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALN 169

Query: 149 VSPPQSH 151
           V+  QS+
Sbjct: 170 VAGEQSN 176

[Close]

BLAST of Tan0013750.6 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 9.8e-09
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 83  STTSSSDEQCRICQQEKEEVLIE------LGCHCRGGLAKAHRTCIDTWFRTKGSNRCEI 142
           S   S ++ CRIC    E    E      LGC C+  L   H+ C DTWF+ KG+  CEI
Sbjct: 69  SIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEI 128

Query: 143 CQVVAAN 144
           C+ +A N
Sbjct: 129 CRSIAQN 135

The following BLAST results are available for this feature:

BLAST of Tan0013750.6 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013750.6 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875308.1	9.0e-97	81.28	E3 ubiquitin-protein ligase MARCHF2 isoform X3 [Benincasa hispida]	[more]
XP_023534486.1	2.0e-96	79.91	E3 ubiquitin-protein ligase MARCH2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_038875306.1	3.4e-96	86.57	uncharacterized protein LOC120067793 isoform X1 [Benincasa hispida]	[more]
XP_022995601.1	3.4e-96	79.91	E3 ubiquitin-protein ligase MARCH2-like isoform X1 [Cucurbita maxima]	[more]
KAG6605619.1	2.2e-95	79.48	hypothetical protein SDJN03_02936, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0013750.6 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K2D4	1.7e-96	79.91	E3 ubiquitin-protein ligase MARCH2-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1H2W4	1.8e-95	79.48	E3 ubiquitin-protein ligase MARCH2-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1K8G6	5.3e-95	79.48	E3 ubiquitin-protein ligase MARCH2-like isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1E3C4	5.3e-95	78.63	E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1H4V9	5.9e-94	79.04	E3 ubiquitin-protein ligase MARCH2-like isoform X2 OS=Cucurbita moschata OX=3662...	[more]

BLAST of Tan0013750.6 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45530.1	4.2e-60	61.73	RING/U-box superfamily protein	[more]
AT2G37950.1	1.6e-11	50.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	6.2e-11	44.62	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.0e-09	41.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	9.8e-09	40.30	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 91..138 e-value: 3.9E-15 score: 66.3
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 92..137 e-value: 9.3E-11 score: 41.7
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 84..144 score: 19.51239
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 77..146 e-value: 1.0E-14 score: 55.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 20..214
None	No IPR available	PANTHER	PTHR46214:SF16	E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1	coord: 20..214
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 92..138 e-value: 7.40873E-12 score: 57.3372
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 87..140

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0013750	Tan0013750	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013750.6-five_prime_utr	Tan0013750.6-five_prime_utr-LG07:3878214..3878765	five_prime_UTR
Tan0013750.6-five_prime_utr	Tan0013750.6-five_prime_utr-LG07:3879234..3879339	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013750.6-exon	Tan0013750.6-exon-LG07:3878214..3878765	exon
Tan0013750.6-exon	Tan0013750.6-exon-LG07:3879234..3879617	exon
Tan0013750.6-exon	Tan0013750.6-exon-LG07:3880289..3880423	exon
Tan0013750.6-exon	Tan0013750.6-exon-LG07:3880513..3880555	exon
Tan0013750.6-exon	Tan0013750.6-exon-LG07:3882165..3882221	exon
Tan0013750.6-exon	Tan0013750.6-exon-LG07:3882299..3882876	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013750.6-cds	Tan0013750.6-cds-LG07:3879340..3879617	CDS
Tan0013750.6-cds	Tan0013750.6-cds-LG07:3880289..3880423	CDS
Tan0013750.6-cds	Tan0013750.6-cds-LG07:3880513..3880555	CDS
Tan0013750.6-cds	Tan0013750.6-cds-LG07:3882165..3882221	CDS
Tan0013750.6-cds	Tan0013750.6-cds-LG07:3882299..3882640	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013750.6-three_prime_utr	Tan0013750.6-three_prime_utr-LG07:3882641..3882876	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0013750.6	Tan0013750.6-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding