Tan0004440.5 (mRNA) Snake gourd v1

Overview


Name	Tan0004440.5
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	LG05: 67789564 .. 67791305 (+)
Sequence length	1403
RNA-Seq Expression	Tan0004440.5
Synteny	Tan0004440.5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATCAACAAAATTCCCTCTGTTCATACTTGCTTTTCTTCTCCCTCTCTGTATACTTTATTTTCTTCATATCTGATGTTATGGTATCAGAGACCTAGTCTTGCGACTTGTTGGTTGATCGATGGAGACGTCTGAAGTAAATTCTGATTTGTTAAAAAATAATCAGGTATCATTGATAATCAATCCTGGAAACAAAGTCTCTATTGTGAAATTAAGCAACAATAACTTTCTTCTCTGGAAATTTCAAGTTGAATTTGTACTTGAAGGCTATTGATTAATGGAAACACATGTAGGTGAGAACTCAGAGCCACTTCCTAAACTCTTACAAGTAAGTGAGAACTTTACTATTATTAGTAAACCGAATCCTGTTTATGGTTCAATGGAAAAGACGACAAATTAATTTACTCTTGGTTACTTCACTATATGACAGGAGAGATATTAGAACAGATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAATATTAACAGAGGAGGAAGATCTTCATGGAACAATAGGAACAAACTACAGTGCCAACTTTGTAATAAGTTTGGCCACACATCAATCAAATGCTACTCACATTATGGTCCTCCTTAATTGAACACTGTCAATCAGAATAATATTCCTTCATTTGGTAATTTTGGGTCGAATAAATTTTCTCCCTATGGTACTCAATCTTCCCCAATAGCTGCTATGGTTACCACACCCAATTTTAATCAGGATTGCAACTGGTATCCCGACTCTGGTGCAACAAATCATCCCACAAATAACTTTGAAAATCTTTCTGCAAGCTCAGAGTACCTTGGCATGGACATGTTGGGAATGGAGCAAGGTTTGCCTATCACTCATCTTGGTTATGTTATATTTCTTCTCCTTCTAAACGTACTTTCCATCTTAACAATCTGTTGTGTAATAAAACTGAGTAACACTAGCAAATTGATTACGACTTAACTGGCTACAAGCTATTACAATAGTAAGTAATTGTGCAAATATTGTATATAGCAACCAAATCAAAACTCAAGAATAAAAAATTGCAAATAGTCGAGACATGCTTACTAAGATGAAGACAATTATTCGCTCTGCAGGTTTGCAAGCAGACTATTGATAACACATTATTGCTAGTTTTATGTTAATTTCAGAGCTTTGATGTGTTTAAATCACTTAATTTCAGGTACAAAGCATAAATAAGACAATTGGAGACATTTTAGATCACTCGGGATCGAATCGAGGCTTTTTAAACTAGTAGACCTGAGATGATGGCGTTGCAACGTCGAGCTTGCTGTTTTTGTGCATAGAAGGTGTTGGGATATGTGCCATAAAACTTATGTAATGTTGATGAAATAAATAAAGAGTTATTCATTTTGATAAAATTA

mRNA sequence

TACAAATCAACAAAATTCCCTCTGTTCATACTTGCTTTTCTTCTCCCTCTCTGTATACTTTATTTTCTTCATATCTGATGTTATGGTATCAGAGACCTAGTCTTGCGACTTGTTGGTTGATCGATGGAGACGTCTGAAGTAAATTCTGATTTGTTAAAAAATAATCAGGTATCATTGATAATCAATCCTGGAAACAAAGTCTCTATTGTGAAATTAAGCAACAATAACTTTCTTCTCTGGAAATTTCAAGTTGAATTTGTACTTGAAGGCTATTGATTAATGGAAACACATGTAGGTGAGAACTCAGAGCCACTTCCTAAACTCTTACAAGTAAGTGAGAACTTTACTATTATTAGTAAACCGAATCCTGTTTATGGTTCAATGGAAAAGACGACAAATTAATTTACTCTTGGTTACTTCACTATATGACAGGAGAGATATTAGAACAGATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAATATTAACAGAGGAGGAAGATCTTCATGGAACAATAGGAACAAACTACAGTGCCAACTTTGTAATAAGTTTGGCCACACATCAATCAAATGCTACTCACATTATGGTCCTCCTTAATTGAACACTGTCAATCAGAATAATATTCCTTCATTTGGTAATTTTGGGTCGAATAAATTTTCTCCCTATGGTACTCAATCTTCCCCAATAGCTGCTATGGTTACCACACCCAATTTTAATCAGGATTGCAACTGGTATCCCGACTCTGGTGCAACAAATCATCCCACAAATAACTTTGAAAATCTTTCTGCAAGCTCAGAGTACCTTGGCATGGACATGTTGGGAATGGAGCAAGGTACAAAGCATAAATAAGACAATTGGAGACATTTTAGATCACTCGGGATCGAATCGAGGCTTTTTAAACTAGTAGACCTGAGATGATGGCGTTGCAACGTCGAGCTTGCTGTTTTTGTGCATAGAAGGTGTTGGGATATGTGCCATAAAACTTATGTAATGTTGATGAAATAAATAAAGAGTTATTCATTTTGATAAAATTA

Coding sequence (CDS)

ATGACAGGAGAGATATTAGAACAGATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAA

Protein sequence

MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDAVGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQNRLRTL

Homology

[Close]

BLAST of Tan0004440.5 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-24
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M  +IL QMLHCT +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++
Sbjct: 241 MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQ 300

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KPIS +DHI+Y+L+ LG  Y+SMI VIS +    SVQDVM+LLLT  ++IE
Sbjct: 301 CVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIE 360

[Close]

BLAST of Tan0004440.5 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-24
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +
Sbjct: 106 MSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQ 165

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ E
Sbjct: 166 CVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNE 225

Query: 121 SKTIDIYGTLSSTHLLTQ 136
           SK I     L S +++TQ
Sbjct: 226 SKLIS-ETALPSVNIVTQ 242

[Close]

BLAST of Tan0004440.5 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-24
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +
Sbjct: 106 MSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQ 165

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ E
Sbjct: 166 CVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNE 225

Query: 121 SKTIDIYGTLSSTHLLTQ 136
           SK I     L S +++TQ
Sbjct: 226 SKLIS-ETALPSVNIVTQ 242

[Close]

BLAST of Tan0004440.5 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-23
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ EIL QM+HC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +S  EYF KI++
Sbjct: 101 MSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQ 160

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KP+S +DHI+Y+L  LG  Y+SMI +IS +    S+Q+VM+LLLT  ++ E
Sbjct: 161 CVDALASINKPVSSDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNE 220

Query: 121 SKTI 122
           SK I
Sbjct: 221 SKLI 224

[Close]

BLAST of Tan0004440.5 vs. NCBI nr
Match: KAA0046195.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ +IL QMLH T +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++
Sbjct: 82  MSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQ 141

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KPIS +DHI+Y+L+ LG  Y+S+I +IS +    SVQD M+LLLT  ++IE
Sbjct: 142 CVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE 201

Query: 121 SKTIDIYGTLSSTHLLTQNR 138
           SK I    +L + ++ T  R
Sbjct: 202 SK-ITSEVSLPTVNMTTHTR 220

[Close]

BLAST of Tan0004440.5 vs. ExPASy TrEMBL
Match: A0A5A7TUB3 (Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001440 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M  +IL QMLHCT +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++
Sbjct: 241 MGEDILNQMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQ 300

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KPIS +DHI+Y+L+ LG  Y+SMI VIS +    SVQDVM+LLLT  ++IE
Sbjct: 301 CVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIE 360

[Close]

BLAST of Tan0004440.5 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +
Sbjct: 106 MSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQ 165

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ E
Sbjct: 166 CVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNE 225

Query: 121 SKTIDIYGTLSSTHLLTQ 136
           SK I     L S +++TQ
Sbjct: 226 SKLIS-ETALPSVNIVTQ 242

[Close]

BLAST of Tan0004440.5 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ EIL QMLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +
Sbjct: 106 MSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQ 165

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ E
Sbjct: 166 CVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNE 225

Query: 121 SKTIDIYGTLSSTHLLTQ 136
           SK I     L S +++TQ
Sbjct: 226 SKLIS-ETALPSVNIVTQ 242

[Close]

BLAST of Tan0004440.5 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.3e-24
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ EIL QM+HC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +S  EYF KI++
Sbjct: 101 MSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQ 160

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KP+S +DHI+Y+L  LG  Y+SMI +IS +    S+Q+VM+LLLT  ++ E
Sbjct: 161 CVDALASINKPVSSDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNE 220

Query: 121 SKTI 122
           SK I
Sbjct: 221 SKLI 224

[Close]

BLAST of Tan0004440.5 vs. ExPASy TrEMBL
Match: A0A5D3CRZ7 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00160 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 1   MTGEILEQMLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKK 60
           M+ +IL QMLH T +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++
Sbjct: 82  MSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQ 141

Query: 61  CVDA---VGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 120
           CVDA   + KPIS +DHI+Y+L+ LG  Y+S+I +IS +    SVQD M+LLLT  ++IE
Sbjct: 142 CVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE 201

Query: 121 SKTIDIYGTLSSTHLLTQNR 138
           SK I    +L + ++ T  R
Sbjct: 202 SK-ITSEVSLPTVNMTTHTR 220

[Close]

BLAST of Tan0004440.5 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 29/106 (27.36%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 15  SKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISI 74
           S+ IW  +   F +   A+ +++ S L+    G +   +Y+ K+KK  D+   V  P++ 
Sbjct: 95  SRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTD 154

Query: 75  EDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 118
            + +MYVL+ L P ++++I VI  +  + S  D  T+L    +R++
Sbjct: 155 RNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLK 200

The following BLAST results are available for this feature:

BLAST of Tan0004440.5 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004440.5 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045111.1	2.3e-24	54.10	putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236...	[more]
KAA0048297.1	5.0e-24	50.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	5.0e-24	50.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0053143.1	1.9e-23	50.81	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0046195.1	2.1e-22	47.14	putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 p...	[more]

BLAST of Tan0004440.5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUB3	1.1e-24	54.10	Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7U233	2.4e-24	50.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	2.4e-24	50.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UB21	9.3e-24	50.81	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CRZ7	1.0e-22	47.14	Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0004440.5 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	2.3e-06	27.36	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..112 e-value: 7.8E-10 score: 38.6
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 4..123
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 4..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0004440	Tan0004440	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004440.5-five_prime_utr	Tan0004440.5-five_prime_utr-LG05:67789564..67789988	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004440.5-exon	Tan0004440.5-exon-LG05:67789564..67790764	exon
Tan0004440.5-exon	Tan0004440.5-exon-LG05:67791104..67791305	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004440.5-cds	Tan0004440.5-cds-LG05:67789989..67790414	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004440.5-three_prime_utr	Tan0004440.5-three_prime_utr-LG05:67790415..67790764	three_prime_UTR
Tan0004440.5-three_prime_utr	Tan0004440.5-three_prime_utr-LG05:67791104..67791305	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0004440.5	Tan0004440.5-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0016740	transferase activity