Tan0004440 (gene) Snake gourd v1

Overview


Name	Tan0004440
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	LG05: 67789564 .. 67791305 (+)
RNA-Seq Expression	Tan0004440
Synteny	Tan0004440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATCAACAAAATTCCCTCTGTTCATACTTGCTTTTCTTCTCCCTCTCTGTATACTTTATTTTCTTCATATCTGATGTTATGGTATCAGAGACCTAGTCTTGCGACTTGTTGGTTGATCGATGGAGACGTCTGAAGTAAATTCTGATTTGTTAAAAAATAATCAGGTATCATTGATAATCAATCCTGGAAACAAAGTCTCTATTGTGAAATTAAGCAACAATAACTTTCTTCTCTGGAAATTTCAAGTTGAATTTGTACTTGAAGGCTATTGATTAATGGAAACACATGTAGGTGAGAACTCAGAGCCACTTCCTAAACTCTTACAAGTAAGTGAGAACTTTACTATTATTAGTAAACCGAATCCTGTTTATGGTTCAATGGAAAAGACGACAAATTAATTTACTCTTGGTTACTTCACTATATGACAGGAGAGATATTAGAACAGATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAATATTAACAGAGGAGGAAGATCTTCATGGAACAATAGGAACAAACTACAGTGCCAACTTTGTAATAAGTTTGGCCACACATCAATCAAATGCTACTCACATTATGGTCCTCCTTAATTGAACACTGTCAATCAGAATAATATTCCTTCATTTGGTAATTTTGGGTCGAATAAATTTTCTCCCTATGGTACTCAATCTTCCCCAATAGCTGCTATGGTTACCACACCCAATTTTAATCAGGATTGCAACTGGTATCCCGACTCTGGTGCAACAAATCATCCCACAAATAACTTTGAAAATCTTTCTGCAAGCTCAGAGTACCTTGGCATGGACATGTTGGGAATGGAGCAAGGTTTGCCTATCACTCATCTTGGTTATGTTATATTTCTTCTCCTTCTAAACGTACTTTCCATCTTAACAATCTGTTGTGTAATAAAACTGAGTAACACTAGCAAATTGATTACGACTTAACTGGCTACAAGCTATTACAATAGTAAGTAATTGTGCAAATATTGTATATAGCAACCAAATCAAAACTCAAGAATAAAAAATTGCAAATAGTCGAGACATGCTTACTAAGATGAAGACAATTATTCGCTCTGCAGGTTTGCAAGCAGACTATTGATAACACATTATTGCTAGTTTTATGTTAATTTCAGAGCTTTGATGTGTTTAAATCACTTAATTTCAGGTACAAAGCATAAATAAGACAATTGGAGACATTTTAGATCACTCGGGATCGAATCGAGGCTTTTTAAACTAGTAGACCTGAGATGATGGCGTTGCAACGTCGAGCTTGCTGTTTTTGTGCATAGAAGGTGTTGGGATATGTGCCATAAAACTTATGTAATGTTGATGAAATAAATAAAGAGTTATTCATTTTGATAAAATTA

mRNA sequence

TACAAATCAACAAAATTCCCTCTGTTCATACTTGCTTTTCTTCTCCCTCTCTGTATACTTTATTTTCTTCATATCTGATGTTATGGTATCAGAGACCTAGTCTTGCGACTTGTTGGTTGATCGATGGAGACGTCTGAAGTAAATTCTGATTTGTTAAAAAATAATCAGGTGAGAACTCAGAGCCACTTCCTAAACTCTTACAAGAGAGATATTAGAACAGATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAATATTAACAGAGGAGGAAGATCTTCATGGAACAATAGGAACAAACTACAGTGCCAACTTTGTAATAAGTTTGGCCACACATCAATCAAATGCTACTCACATTATGGTCCTCCTTAATTGAACACTGTCAATCAGAATAATATTCCTTCATTTGGTAATTTTGGGTCGAATAAATTTTCTCCCTATGGTACTCAATCTTCCCCAATAGCTGCTATGGTTACCACACCCAATTTTAATCAGGATTGCAACTGGTATCCCGACTCTGGTGCAACAAATCATCCCACAAATAACTTTGAAAATCTTTCTGCAAGCTCAGAGTACCTTGGCATGGACATGTTGGGAATGGAGCAAGGTACAAAGCATAAATAAGACAATTGGAGACATTTTAGATCACTCGGGATCGAATCGAGGCTTTTTAAACTAGTAGACCTGAGATGATGGCGTTGCAACGTCGAGCTTGCTGTTTTTGTGCATAGAAGGTGTTGGGATATGTGCCATAAAACTTATGTAATGTTGATGAAATAAATAAAGAGTTATTCATTTTGATAAAATTA

Coding sequence (CDS)

ATGCTTCACTGTACGTATTCTAAGAAAATTTGGTCTTGCTTACTTCAAAATTTCAACTCTAGAAACTTAGCTCAGGTAATGAAGATGAAATCGACTTTACAAAATTTTAAGAAAGGAGGTTTATCTTCGAATGAATATTTTTCAAAAATTAAGAAGTGTGTAGATGCAGTAGGCAAGCCTATATCGATTGAAGATCATATCATGTACGTTTTATCTAGTCTTGGTCCTGGATATGAGTCAATGATTTATGTTATTTCTGTTAAAGTTTTTTATGAAAGTGTGCAAGATGTGATGACTCTTCTTCTTACTCATGGGAATCGGATAGAAAGTAAAACAATTGACATATATGGTACTTTGTCGTCAACACATCTTTTGACTCAAAATCGGTTGAGGACACTCTAA

Protein sequence

MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDAVGKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYGTLSSTHLLTQNRLRTL

Homology

[Close]

BLAST of Tan0004440 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-22
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           MLHCT +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++CVDA   +
Sbjct: 249 MLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASI 308

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESK 112
            KPIS +DHI+Y+L+ LG  Y+SMI VIS +    SVQDVM+LLLT  ++IESK
Sbjct: 309 NKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIESK 362

[Close]

BLAST of Tan0004440 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           MLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   +
Sbjct: 114 MLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASI 173

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYG 120
            KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ ESK I    
Sbjct: 174 NKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ET 233

Query: 121 TLSSTHLLTQ 128
            L S +++TQ
Sbjct: 234 ALPSVNIVTQ 242

[Close]

BLAST of Tan0004440 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           MLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   +
Sbjct: 114 MLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASI 173

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYG 120
            KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ ESK I    
Sbjct: 174 NKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ET 233

Query: 121 TLSSTHLLTQ 128
            L S +++TQ
Sbjct: 234 ALPSVNIVTQ 242

[Close]

BLAST of Tan0004440 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           M+HC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +S  EYF KI++CVDA   +
Sbjct: 109 MVHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASI 168

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTI 114
            KP+S +DHI+Y+L  LG  Y+SMI +IS +    S+Q+VM+LLLT  ++ ESK I
Sbjct: 169 NKPVSSDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLI 224

[Close]

BLAST of Tan0004440 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-20
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVD---AV 60
           M+HC  ++++W  L   + SRNLA+VM++KS L+N KKG L   +YF K+K  VD   A 
Sbjct: 23  MIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAA 82

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYG 120
           GK +++EDHIM++L+ L   +ES + VIS +   +++Q+V +LLL+H  R E  +I+  G
Sbjct: 83  GKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDG 142

Query: 121 TLSSTHLLTQNR 130
           TL S +L  Q +
Sbjct: 143 TLPSVNLTQQTK 154

[Close]

BLAST of Tan0004440 vs. ExPASy TrEMBL
Match: A0A5A7TUB3 (Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001440 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           MLHCT +K+IW  L   ++SR LA+ M+ K+ L N KKG +S  EYF KI++CVDA   +
Sbjct: 249 MLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALASI 308

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESK 112
            KPIS +DHI+Y+L+ LG  Y+SMI VIS +    SVQDVM+LLLT  ++IESK
Sbjct: 309 NKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIESK 362

[Close]

BLAST of Tan0004440 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           MLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   +
Sbjct: 114 MLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASI 173

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYG 120
            KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ ESK I    
Sbjct: 174 NKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ET 233

Query: 121 TLSSTHLLTQ 128
            L S +++TQ
Sbjct: 234 ALPSVNIVTQ 242

[Close]

BLAST of Tan0004440 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           MLHC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +   EYF KI +CVDA   +
Sbjct: 114 MLHCKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASI 173

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYG 120
            KP+S +DHI+Y+L+ LG  Y+SMI VIS +    SVQ+VM+LLLT  ++ ESK I    
Sbjct: 174 NKPVSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ET 233

Query: 121 TLSSTHLLTQ 128
            L S +++TQ
Sbjct: 234 ALPSVNIVTQ 242

[Close]

BLAST of Tan0004440 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.3e-21
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---V 60
           M+HC  +K+IW  L   F+SR LAQ M+ K+ L N KKG +S  EYF KI++CVDA   +
Sbjct: 109 MVHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASI 168

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTI 114
            KP+S +DHI+Y+L  LG  Y+SMI +IS +    S+Q+VM+LLLT  ++ ESK I
Sbjct: 169 NKPVSSDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLI 224

[Close]

BLAST of Tan0004440 vs. ExPASy TrEMBL
Match: A0A6J1C8R2 (dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.1e-21
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MLHCTYSKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVD---AV 60
           M+HC  ++++W  L   + SRNLA+VM++KS L+N KKG L   +YF K+K  VD   A 
Sbjct: 23  MIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKKGNLPLKDYFQKVKALVDSLAAA 82

Query: 61  GKPISIEDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIESKTIDIYG 120
           GK +++EDHIM++L+ L   +ES + VIS +   +++Q+V +LLL+H  R E  +I+  G
Sbjct: 83  GKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYSLLLSHEGRNERNSINTDG 142

Query: 121 TLSSTHLLTQNR 130
           TL S +L  Q +
Sbjct: 143 TLPSVNLTQQTK 154

[Close]

BLAST of Tan0004440 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 29/106 (27.36%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 7   SKKIWSCLLQNFNSRNLAQVMKMKSTLQNFKKGGLSSNEYFSKIKKCVDA---VGKPISI 66
           S+ IW  +   F +   A+ +++ S L+    G +   +Y+ K+KK  D+   V  P++ 
Sbjct: 95  SRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTD 154

Query: 67  EDHIMYVLSSLGPGYESMIYVISVKVFYESVQDVMTLLLTHGNRIE 110
            + +MYVL+ L P ++++I VI  +  + S  D  T+L    +R++
Sbjct: 155 RNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLK 200

The following BLAST results are available for this feature:

BLAST of Tan0004440 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045111.1	2.6e-22	54.39	putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236...	[more]
KAA0048297.1	2.9e-21	49.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	2.9e-21	49.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0053143.1	1.1e-20	50.00	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
XP_022136882.1	1.9e-20	42.42	dr1-associated corepressor homolog isoform X1 [Momordica charantia]	[more]

BLAST of Tan0004440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUB3	1.3e-22	54.39	Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7U233	1.4e-21	49.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	1.4e-21	49.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UB21	5.3e-21	50.00	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1C8R2	9.1e-21	42.42	dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Tan0004440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	2.1e-06	27.36	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..112 e-value: 7.8E-10 score: 38.6
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 4..123
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 4..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004440.1	Tan0004440.1	mRNA
Tan0004440.2	Tan0004440.2	mRNA
Tan0004440.3	Tan0004440.3	mRNA
Tan0004440.4	Tan0004440.4	mRNA
Tan0004440.5	Tan0004440.5	mRNA
Tan0004440.6	Tan0004440.6	mRNA
Tan0004440.7	Tan0004440.7	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0016740	transferase activity