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Tan0002588.2 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGCCTAACATTCACAGCTGCAGGCTGAAGCAGGCGGGATAAATTGTTTGCGACGACGAAAAACCCCAACTGCGAAAGAAGCCAAGCAACAATAGCAGCTCCGTCTCTGTAGGAACTATGGCTGTCGAAGCTGACACGTCTGGAGGCTTGGATGAAGTTCACAGCGACGTTCTAGAGGAATCCAGACAAGCTTGCTACAAGGTTTTCTCTCTCAATCACTCTCTTATTCTCTACAATTTCTGTTTCATAAGAATGCTCGAGTGTTAATATGGCAATTGAATGCATCTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGTCTTCTTTACCCCGCCGAGTGTAAAGCCTCGAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATGCCACTTCCCGATCGTTTGAGATTTCAATATCATGTTTGTTCTTAGAGTTTATGGTCTAATAGGTTTTGGTTTATGGTGTTTATGTTCTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTAATACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGATTGTGGCGGAACAACTTTGGCGGTCAGAGTCTTATGACTATCGTTATTTATTTATTTTTCTTCTCTTACTTTGTATAGAGATGATTGTGGCAATAGATTTCATAATAATGTCAATCTTCTTACCAACTTACAAAAGCCTATTCCCTTCCTTTGATATATATCAGAGTCTTATGACCATGATGTACTAACTAAACATAAGTTACGTAACAAGGCCATAAAAATTTGTGAGTTTGTTATCTAATTTAGTCTTGGTATTGGTAGTTG AAAAGCCTAACATTCACAGCTGCAGGCTGAAGCAGGCGGGATAAATTGTTTGCGACGACGAAAAACCCCAACTGCGAAAGAAGCCAAGCAACAATAGCAGCTCCGTCTCTGTAGGAACTATGGCTGTCGAAGCTGACACGTCTGGAGGCTTGGATGAAGTTCACAGCGACGTTCTAGAGGAATCCAGACAAGCTTGCTACAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGTCTTCTTTACCCCGCCGAGTGTAAAGCCTCGAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTAATACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGATTGTGGCGGAACAACTTTGGCGGTCAGAGTCTTATGACTATCGTTATTTATTTATTTTTCTTCTCTTACTTTGTATAGAGATGATTGTGGCAATAGATTTCATAATAATGTCAATCTTCTTACCAACTTACAAAAGCCTATTCCCTTCCTTTGATATATATCAGAGTCTTATGACCATGATGTACTAACTAAACATAAGTTACGTAACAAGGCCATAAAAATTTGTGAGTTTGTTATCTAATTTAGTCTTGGTATTGGTAGTTG ATGGCTGTCGAAGCTGACACGTCTGGAGGCTTGGATGAAGTTCACAGCGACGTTCTAGAGGAATCCAGACAAGCTTGCTACAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGTCTTCTTTACCCCGCCGAGTGTAAAGCCTCGAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTAATACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGA MAVEADTSGGLDEVHSDVLEESRQACYKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS Homology
BLAST of Tan0002588.2 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida]) HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45 Identity = 97/114 (85.09%), Postives = 99/114 (86.84%), Query Frame = 0
BLAST of Tan0002588.2 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia]) HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45 Identity = 97/114 (85.09%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Tan0002588.2 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima]) HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44 Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Tan0002588.2 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa]) HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44 Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0
BLAST of Tan0002588.2 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 188.3 bits (477), Expect = 3.2e-44 Identity = 94/114 (82.46%), Postives = 97/114 (85.09%), Query Frame = 0
BLAST of Tan0002588.2 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45 Identity = 97/114 (85.09%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Tan0002588.2 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 7.0e-45 Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Tan0002588.2 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44 Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0
BLAST of Tan0002588.2 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44 Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 0
BLAST of Tan0002588.2 vs. ExPASy TrEMBL
Match: A0A6J1EDW1 (cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC111433269 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44 Identity = 94/114 (82.46%), Postives = 97/114 (85.09%), Query Frame = 0
BLAST of Tan0002588.2 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein ) HSP 1 Score: 139.8 bits (351), Expect = 1.2e-33 Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of Tan0002588.2 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein ) HSP 1 Score: 139.8 bits (351), Expect = 1.2e-33 Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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