Tan0002588 (gene) Snake gourd v1

Overview


Name	Tan0002588
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	cytochrome c oxidase assembly factor 6
Location	LG09: 67342202 .. 67343122 (-)
RNA-Seq Expression	Tan0002588
Synteny	Tan0002588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGCCTAACATTCACAGCTGCAGGCTGAAGCAGGCGGGATAAATTGTTTGCGACGACGAAAAACCCCAACTGCGAAAGAAGCCAAGCAACAATAGCAGCTCCGTCTCTGTAGGAACTATGGCTGTCGAAGCTGACACGTCTGGAGGCTTGGATGAAGTTCACAGCGACGTTCTAGAGGAATCCAGACAAGCTTGCTACAAGGTTTTCTCTCTCAATCACTCTCTTATTCTCTACAATTTCTGTTTCATAAGAATGCTCGAGTGTTAATATGGCAATTGAATGCATCTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGTCTTCTTTACCCCGCCGAGTGTAAAGCCTCGAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATGCCACTTCCCGATCGTTTGAGATTTCAATATCATGTTTGTTCTTAGAGTTTATGGTCTAATAGGTTTTGGTTTATGGTGTTTATGTTCTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTAATACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGATTGTGGCGGAACAACTTTGGCGGTCAGAGTCTTATGACTATCGTTATTTATTTATTTTTCTTCTCTTACTTTGTATAGAGATGATTGTGGCAATAGATTTCATAATAATGTCAATCTTCTTACCAACTTACAAAAGCCTATTCCCTTCCTTTGATATATATCAGAGTCTTATGACCATGATGTACTAACTAAACATAAGTTACGTAACAAGGCCATAAAAATTTGTGAGTTTGTTATCTAATTTAGTCTTGGTATTGGTAGTTG

mRNA sequence

AAAAGCCTAACATTCACAGCTGCAGGCTGAAGCAGGCGGGATAAATTGTTTGCGACGACGAAAAACCCCAACTGCGAAAGAAGCCAAGCAACAATAGCAGCTCCGTCTCTGTAGGAACTATGGCTGTCGAAGCTGACACGTCTGGAGGCTTGGATGAAGTTCACAGCGACGTTCTAGAGGAATCCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGTCTTCTTTACCCCGCCGAGTGTAAAGCCTCGAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTAATACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGATTGTGGCGGAACAACTTTGGCGGTCAGAGTCTTATGACTATCGTTATTTATTTATTTTTCTTCTCTTACTTTGTATAGAGATGATTGTGGCAATAGATTTCATAATAATGTCAATCTTCTTACCAACTTACAAAAGCCTATTCCCTTCCTTTGATATATATCAGAGTCTTATGACCATGATGTACTAACTAAACATAAGTTACGTAACAAGGCCATAAAAATTTGTGAGTTTGTTATCTAATTTAGTCTTGGTATTGGTAGTTG

Coding sequence (CDS)

ATGGCTGTCGAAGCTGACACGTCTGGAGGCTTGGATGAAGTTCACAGCGACGTTCTAGAGGAATCCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCCACTGAAATTGCTTCTGTTGGTCTTCTTTACCCCGCCGAGTGTAAAGCCTCGAGGGCTGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTAATACTTCCGCAGCCTTACACTTTTAAGCCCACTAGTTGA

Protein sequence

MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECKASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS

Homology

[Close]

BLAST of Tan0002588 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.5e-55
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAVEAD SGGLDEVHSDVL ESRQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           A RA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT+
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Tan0002588 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAVEAD SGGLDEVHSDVL  SRQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Tan0002588 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 6.5e-54
Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA+E D SGG +EVH+DVL E RQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Tan0002588 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAVEAD+SGG DEVH+DVL ESRQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Tan0002588 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 105/114 (92.11%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGG +EVH+DVL E RQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Tan0002588 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.8e-55
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAVEAD SGGLDEVHSDVL  SRQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Tan0002588 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA+E D SGG +EVH+DVL E RQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Tan0002588 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAVEAD+SGG DEVH+DVL ESRQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Tan0002588 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MAVEAD+SGG DEVH+DVL ESRQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           A RA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPLILPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of Tan0002588 vs. ExPASy TrEMBL
Match: A0A6J1EDW1 (cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC111433269 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.0e-54
Identity = 105/114 (92.11%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA E D SGG +EVH+DVL E RQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTS 115
           ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL+LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Tan0002588 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA++   S   ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 114
            SR +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of Tan0002588 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEADTSGGLDEVHSDVLEESRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60
           MA++   S   ++VH DVL ++R ACYKARDAFYAC+EKES KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 114
            SR +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of Tan0002588 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002588 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878579.1	4.5e-55	94.74	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_022134674.1	1.0e-54	94.74	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_022973432.1	6.5e-54	92.11	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]
XP_008443871.1	1.1e-53	91.23	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_022926034.1	1.4e-53	92.11	cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypoth...	[more]

BLAST of Tan0002588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	4.8e-55	94.74	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1I7I2	3.1e-54	92.11	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]
A0A1S3B9T5	5.3e-54	91.23	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	5.3e-54	91.23	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1EDW1	7.0e-54	92.11	cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Tan0002588 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	1.2e-42	68.14	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	1.2e-42	68.14	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 3..69 e-value: 1.5E-5 score: 26.8
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 5..69 e-value: 1.2E-14 score: 54.3
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 4..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002588.1	Tan0002588.1	mRNA
Tan0002588.2	Tan0002588.2	mRNA
Tan0002588.3	Tan0002588.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV