Spg022420.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg022420.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Dynein light chain, type 1/2
Location	scaffold2: 5207335 .. 5208451 (+)
Sequence length	831
RNA-Seq Expression	Spg022420.1
Synteny	Spg022420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAAACCATTTAAACTAAGAATGGAAAAGAAAACAAAAACGACACAATAAATTCAGTGGTCAATTCAATAAAGGCCTCTGTCTGCAGTAGCAGCTCAATTTGGATTGACCATCAACAGTTCCATATCTCACCCACATGGCTCAACACACCCACCCACCTCCTCCATCACTCCCATAGCTCTCAATCTTACAAATCCATGGCTTCCCATCAAACTTCACACCAACCCCTATTATCACCTCCCTCATCCATGGACCCCCACCGTAGAAACCAACCCACCGCCGCCTCCGCCTCCGCCGCCGCCGCCGCTGCCGCTGCCTCTCCACACCCAACATCACCAAAACCAAATCCCACAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTTGATTCCATTTCTCTTCACTCCAAGCCCAAAATGGTCGGCCCCAGAACAGTGCAAAAAGTAGCCAAAAAACCCAACGAAAACCCCAATGATTCCGAAGAAAAACTCGAACGCATGATCAACTGTATCAACGCCAAAGAAAGGGAAATGAAACAGCTCTTACAGGAACACGAACATCTCACTCGCAGGCTCTCTGTTTCGCTGTCTTCATCGCGGAGTGGAAGAAGAAGATCAATCTGTGGCTCACAGATTCAGCTAGCAGACGTTTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCGCGAGAAAGACCCACGACAGTATGGAAAAGTTCACTTCAAAATCGCTCGCGTTGAGTCTGAAGAAGGTAGATAGAATCATAGAAATCAATTAGTTTATCATTTCCCACTTCTTTTTTCTTGTTCTGAATTGGATTTGAGGGTTTGTTTGTTCAGAATGTTGATTTTGGTTGGTTGATTTTGACAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACACATTCAGTGGGTGGATTTCTGTACTTTTCCATGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACAAAGAGCCAATTAGAAATACTGAATCGCTGTGATCATGTTTAG

mRNA sequence

ATGGCTTCCCATCAAACTTCACACCAACCCCTATTATCACCTCCCTCATCCATGGACCCCCACCGTAGAAACCAACCCACCGCCGCCTCCGCCTCCGCCGCCGCCGCCGCTGCCGCTGCCTCTCCACACCCAACATCACCAAAACCAAATCCCACAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTTGATTCCATTTCTCTTCACTCCAAGCCCAAAATGGTCGGCCCCAGAACAGTGCAAAAAGTAGCCAAAAAACCCAACGAAAACCCCAATGATTCCGAAGAAAAACTCGAACGCATGATCAACTGTATCAACGCCAAAGAAAGGGAAATGAAACAGCTCTTACAGGAACACGAACATCTCACTCGCAGGCTCTCTGTTTCGCTGTCTTCATCGCGGAGTGGAAGAAGAAGATCAATCTGTGGCTCACAGATTCAGCTAGCAGACGTTTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCGCGAGAAAGACCCACGACAGTATGGAAAAGTTCACTTCAAAATCGCTCGCGTTGAGTCTGAAGAAGAATGTTGATTTTGGTTGGTTGATTTTGACAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACACATTCAGTGGGTGGATTTCTGTACTTTTCCATGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACAAAGAGCCAATTAGAAATACTGAATCGCTGTGATCATGTTTAG

Coding sequence (CDS)

ATGGCTTCCCATCAAACTTCACACCAACCCCTATTATCACCTCCCTCATCCATGGACCCCCACCGTAGAAACCAACCCACCGCCGCCTCCGCCTCCGCCGCCGCCGCCGCTGCCGCTGCCTCTCCACACCCAACATCACCAAAACCAAATCCCACAACCCCTTTGTCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTTGATTCCATTTCTCTTCACTCCAAGCCCAAAATGGTCGGCCCCAGAACAGTGCAAAAAGTAGCCAAAAAACCCAACGAAAACCCCAATGATTCCGAAGAAAAACTCGAACGCATGATCAACTGTATCAACGCCAAAGAAAGGGAAATGAAACAGCTCTTACAGGAACACGAACATCTCACTCGCAGGCTCTCTGTTTCGCTGTCTTCATCGCGGAGTGGAAGAAGAAGATCAATCTGTGGCTCACAGATTCAGCTAGCAGACGTTTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCGCGAGAAAGACCCACGACAGTATGGAAAAGTTCACTTCAAAATCGCTCGCGTTGAGTCTGAAGAAGAATGTTGATTTTGGTTGGTTGATTTTGACAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACACATTCAGTGGGTGGATTTCTGTACTTTTCCATGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACAAAGAGCCAATTAGAAATACTGAATCGCTGTGATCATGTTTAG

Protein sequence

MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDNLSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENPNDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVDFGWLILTGIRWGLRAGMALYCGEEFWVICDTFSGWISVLFHGSKALHSALQNHCTKSQLEILNRCDHV

Homology

[Close]

BLAST of Spg022420.1 vs. NCBI nr
Match: XP_022972898.1 (uncharacterized protein LOC111471403 [Cucurbita maxima])

HSP 1 Score: 303.9 bits (777), Expect = 1.4e-78
Identity = 172/233 (73.82%), Postives = 185/233 (79.40%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASHQTSHQ LLSPP  MD HRR QPT       AAA   SPHPTSPK +P TPLSDSDN
Sbjct: 15  MASHQTSHQRLLSPPPKMDLHRRTQPT-----TPAAATTVSPHPTSPKLDPITPLSDSDN 74

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSPKV  +SLHS PKMVGPRTV K AKKPNE P         NDSEEK ERMIN
Sbjct: 75  LSKSHPPSPKVVPVSLHSNPKMVGPRTVHKQAKKPNETPRQHSTTEKFNDSEEKFERMIN 134

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSAD
Sbjct: 135 CITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSAD 194

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSMEKFTSKSLALSLK+  D  +G  W  + G  +G
Sbjct: 195 MPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFG 242

[Close]

BLAST of Spg022420.1 vs. NCBI nr
Match: KAG6587507.1 (Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.5 bits (776), Expect = 1.8e-78
Identity = 172/233 (73.82%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASHQTS Q LLSPPS MD HRR QPT       AAA A SPHPTSPK +PTTPLSDSDN
Sbjct: 1   MASHQTSLQRLLSPPSKMDLHRRTQPT-----TPAAATAVSPHPTSPKLDPTTPLSDSDN 60

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSPKV  +SLHS PKMVGPRTV K+AKKPNE P         NDSEEK ERMIN
Sbjct: 61  LSKSHPPSPKVVPVSLHSNPKMVGPRTVHKLAKKPNETPRQHSTTEKFNDSEEKFERMIN 120

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSAD
Sbjct: 121 CITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSAD 180

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSM+ FTSKSLALSLK+  D  +G  W  + G  +G
Sbjct: 181 MPPFMQIHAVDCARKAHDSMQNFTSKSLALSLKQEFDGSYGPAWHCIVGKSFG 228

[Close]

BLAST of Spg022420.1 vs. NCBI nr
Match: XP_022933432.1 (uncharacterized protein LOC111440848 [Cucurbita moschata])

HSP 1 Score: 303.5 bits (776), Expect = 1.8e-78
Identity = 172/233 (73.82%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASHQTS Q LLSPPS MD HRR QPT       AAA A SPHPTSPK +PTTPLSDSDN
Sbjct: 15  MASHQTSLQRLLSPPSKMDLHRRTQPT-----TPAAATAVSPHPTSPKLDPTTPLSDSDN 74

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSPKV  +SLHS PKMVGPRTV K+AKKPNE P         NDSEEK ERMIN
Sbjct: 75  LSKSHPPSPKVVPVSLHSNPKMVGPRTVHKLAKKPNETPRQHSTTEKFNDSEEKFERMIN 134

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSAD
Sbjct: 135 CITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSAD 194

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSM+ FTSKSLALSLK+  D  +G  W  + G  +G
Sbjct: 195 MPPFMQIHAVDCARKAHDSMQNFTSKSLALSLKQEFDGSYGPAWHCIVGKSFG 242

[Close]

BLAST of Spg022420.1 vs. NCBI nr
Match: XP_038879954.1 (uncharacterized protein LOC120071657 [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 7.0e-78
Identity = 176/233 (75.54%), Postives = 188/233 (80.69%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASH TS     S   SMDPHRRNQP A  A+A    A  SPHPTSPK +PTTPLSDSDN
Sbjct: 1   MASHNTS-----SSSKSMDPHRRNQPPA--AAAVVTPAVVSPHPTSPKLDPTTPLSDSDN 60

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKS+PPSPKVDSISLHS PKMVGP TVQKVAKKPNE P         NDSEE+ ERMIN
Sbjct: 61  LSKSNPPSPKVDSISLHSHPKMVGPITVQKVAKKPNETPQEHSTTEKFNDSEERYERMIN 120

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI AKEREMKQLL+EHEHLTRRLSVSLSSSRSGRR+SIC SQIQLADVFANNGV++VSAD
Sbjct: 121 CITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRKSICVSQIQLADVFANNGVKVVSAD 180

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARKTHDSMEKFTSKSLAL+LKK  D  +G  W  + G  +G
Sbjct: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 226

[Close]

BLAST of Spg022420.1 vs. NCBI nr
Match: KAG6587511.1 (hypothetical protein SDJN03_16076, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-73
Identity = 148/196 (75.51%), Postives = 161/196 (82.14%), Query Frame = 0


Query: 82  MVGPRTVQKVAKKPNENP---------NDSEEKLERMINCINAKEREMKQLLQEHEHLTR 141
           MVGPRTV K+AKKPNE P         NDSEEK ERMINCI  KEREMKQLL +H+HLTR
Sbjct: 1   MVGPRTVHKLAKKPNETPRQHSTTEKFNDSEEKFERMINCITTKEREMKQLLVDHQHLTR 60

Query: 142 RLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARKTHDSME 201
           RLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSADMPPFMQIHAVDCARK HDSM+
Sbjct: 61  RLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSADMPPFMQIHAVDCARKAHDSMQ 120

Query: 202 KFTSKSLALSLKKNVDFGWLILTGIRWGLRAGMALYCGEEFWVICDTFSGWISVLFHGSK 261
            FTSKSLALSLK+  D  +           AGMALYCGE+FW+ICDTFSGWI V F GSK
Sbjct: 121 NFTSKSLALSLKQEFDGSY----------GAGMALYCGEKFWIICDTFSGWIPVFFPGSK 180

Query: 262 ALHSALQNHCTKSQLE 269
           ALHSALQNHCTKSQLE
Sbjct: 181 ALHSALQNHCTKSQLE 186

[Close]

BLAST of Spg022420.1 vs. ExPASy TrEMBL
Match: A0A6J1IBG1 (uncharacterized protein LOC111471403 OS=Cucurbita maxima OX=3661 GN=LOC111471403 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 6.8e-79
Identity = 172/233 (73.82%), Postives = 185/233 (79.40%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASHQTSHQ LLSPP  MD HRR QPT       AAA   SPHPTSPK +P TPLSDSDN
Sbjct: 15  MASHQTSHQRLLSPPPKMDLHRRTQPT-----TPAAATTVSPHPTSPKLDPITPLSDSDN 74

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSPKV  +SLHS PKMVGPRTV K AKKPNE P         NDSEEK ERMIN
Sbjct: 75  LSKSHPPSPKVVPVSLHSNPKMVGPRTVHKQAKKPNETPRQHSTTEKFNDSEEKFERMIN 134

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSAD
Sbjct: 135 CITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSAD 194

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSMEKFTSKSLALSLK+  D  +G  W  + G  +G
Sbjct: 195 MPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFG 242

[Close]

BLAST of Spg022420.1 vs. ExPASy TrEMBL
Match: A0A6J1EZR5 (uncharacterized protein LOC111440848 OS=Cucurbita moschata OX=3662 GN=LOC111440848 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 8.9e-79
Identity = 172/233 (73.82%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASHQTS Q LLSPPS MD HRR QPT       AAA A SPHPTSPK +PTTPLSDSDN
Sbjct: 15  MASHQTSLQRLLSPPSKMDLHRRTQPT-----TPAAATAVSPHPTSPKLDPTTPLSDSDN 74

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSPKV  +SLHS PKMVGPRTV K+AKKPNE P         NDSEEK ERMIN
Sbjct: 75  LSKSHPPSPKVVPVSLHSNPKMVGPRTVHKLAKKPNETPRQHSTTEKFNDSEEKFERMIN 134

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI  KEREMKQLL +H+HLTRRLSVSLSSSRSGRR+SICGSQIQLA++FANNGV++VSAD
Sbjct: 135 CITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSAD 194

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSM+ FTSKSLALSLK+  D  +G  W  + G  +G
Sbjct: 195 MPPFMQIHAVDCARKAHDSMQNFTSKSLALSLKQEFDGSYGPAWHCIVGKSFG 242

[Close]

BLAST of Spg022420.1 vs. ExPASy TrEMBL
Match: A0A6J1E0M2 (uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC111429742 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 4.1e-68
Identity = 162/234 (69.23%), Postives = 178/234 (76.07%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MASH+TS        SS+DP+RRN P AA+A++    AA SP+PTS K +P TPLSDSD 
Sbjct: 1   MASHETS--------SSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDK 60

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPS           PKMVGPRTVQ VAKKPNE P         NDSEEK ERMIN
Sbjct: 61  LSKSHPPS-----------PKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMIN 120

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSG-RRRSICGSQIQLADVFANNGVRLVSA 180
           CI AKEREMKQLL+EHEHLTRRLSVSLSSSRSG RRRSICGSQI+LADVFANNGV++VSA
Sbjct: 121 CITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSA 180

Query: 181 DMPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           DMPPFMQIHAVDCARK HDSMEKFTSKSLAL+LKK  D  +G  W  + G  +G
Sbjct: 181 DMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 215

[Close]

BLAST of Spg022420.1 vs. ExPASy TrEMBL
Match: A0A5A7UPX5 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002210 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 152/233 (65.24%), Postives = 165/233 (70.82%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MA+H T+     S   SMDPH RNQP  A A A    A  SPHPTSPK +P TPLSDSDN
Sbjct: 1   MATHNTT-----SSSKSMDPHLRNQPPDA-AVAVVTPAVVSPHPTSPKLDPPTPLSDSDN 60

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSP             VGPRT QKVAKK NE P         N SEE+ E MIN
Sbjct: 61  LSKSHPPSP-------------VGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMIN 120

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI AKEREMKQLL+EHEH+TRRLS+SLSSSRSGRRRS  GSQIQL DVFA NG ++VSAD
Sbjct: 121 CITAKEREMKQLLKEHEHVTRRLSISLSSSRSGRRRSFYGSQIQLGDVFAKNGAKVVSAD 180

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSMEKFTSKSLAL+LKK  D  +G  W  + G  +G
Sbjct: 181 MPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 214

[Close]

BLAST of Spg022420.1 vs. ExPASy TrEMBL
Match: A0A1S3BVI8 (uncharacterized protein LOC103493957 OS=Cucumis melo OX=3656 GN=LOC103493957 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 152/233 (65.24%), Postives = 165/233 (70.82%), Query Frame = 0


Query: 1   MASHQTSHQPLLSPPSSMDPHRRNQPTAASASAAAAAAAASPHPTSPKPNPTTPLSDSDN 60
           MA+H T+     S   SMDPH RNQP  A A A    A  SPHPTSPK +P TPLSDSDN
Sbjct: 1   MATHNTT-----SSSKSMDPHLRNQPPDA-AVAVVTPAVVSPHPTSPKLDPPTPLSDSDN 60

Query: 61  LSKSHPPSPKVDSISLHSKPKMVGPRTVQKVAKKPNENP---------NDSEEKLERMIN 120
           LSKSHPPSP             VGPRT QKVAKK NE P         N SEE+ E MIN
Sbjct: 61  LSKSHPPSP-------------VGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMIN 120

Query: 121 CINAKEREMKQLLQEHEHLTRRLSVSLSSSRSGRRRSICGSQIQLADVFANNGVRLVSAD 180
           CI AKEREMKQLL+EHEH+TRRLS+SLSSSRSGRRRS  GSQIQL DVFA NG ++VSAD
Sbjct: 121 CITAKEREMKQLLKEHEHVTRRLSISLSSSRSGRRRSFYGSQIQLGDVFAKNGAKVVSAD 180

Query: 181 MPPFMQIHAVDCARKTHDSMEKFTSKSLALSLKKNVD--FG--WLILTGIRWG 221
           MPPFMQIHAVDCARK HDSMEKFTSKSLAL+LKK  D  +G  W  + G  +G
Sbjct: 181 MPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 214

[Close]

BLAST of Spg022420.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-07
Identity = 46/158 (29.11%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 78  SKPKMVGPRTVQKVAKKPNENPNDSEEKLERMINCINAKEREMKQLLQEHEHLTRRLSVS 137
           SK  ++ P++  K+   P   P+ S++++E     + + +     ++++   L    S +
Sbjct: 25  SKHSLINPKSKPKI---PISTPSISQQEVEEK-PIVQSNKSHQNHVMRDIFELETTCSRN 84

Query: 138 LSSSRSG-----RRRSI------CGSQIQLADVFANNGVRLVSADMPPFMQIHAVDCARK 197
               + G      R+S+        ++I+ A       VR+++ADMP FMQ HA  CAR 
Sbjct: 85  NERKKGGGAAEEGRKSVSHVERDTAARIEAAAEMLT--VRILAADMPGFMQAHAFRCARM 144

Query: 198 THDSMEKFTSKSLALSLKKNVDFG----WLILTGIRWG 221
           T DS+EKF+SK +A +LKK  D G    W  + G  +G
Sbjct: 145 TLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

The following BLAST results are available for this feature:

BLAST of Spg022420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972898.1	1.4e-78	73.82	uncharacterized protein LOC111471403 [Cucurbita maxima]	[more]
KAG6587507.1	1.8e-78	73.82	Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022933432.1	1.8e-78	73.82	uncharacterized protein LOC111440848 [Cucurbita moschata]	[more]
XP_038879954.1	7.0e-78	75.54	uncharacterized protein LOC120071657 [Benincasa hispida]	[more]
KAG6587511.1	1.8e-73	75.51	hypothetical protein SDJN03_16076, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg022420.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBG1	6.8e-79	73.82	uncharacterized protein LOC111471403 OS=Cucurbita maxima OX=3661 GN=LOC111471403...	[more]
A0A6J1EZR5	8.9e-79	73.82	uncharacterized protein LOC111440848 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1E0M2	4.1e-68	69.23	uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A5A7UPX5	9.9e-62	65.24	Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BVI8	9.9e-62	65.24	uncharacterized protein LOC103493957 OS=Cucumis melo OX=3656 GN=LOC103493957 PE=...	[more]

BLAST of Spg022420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	2.4e-07	29.11	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 18..208
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 18..208

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg022420	Spg022420	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022420.1-five_prime_utr	Spg022420.1-five_prime_utr-scaffold2:5207335..5207532	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022420.1-cds	Spg022420.1-cds-scaffold2:5207533..5208147	CDS
Spg022420.1-cds	Spg022420.1-cds-scaffold2:5208236..5208451	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg022420.1	Spg022420.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding