Spg021601.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg021601.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold9: 5935449 .. 5939160 (-)
Sequence length	1755
RNA-Seq Expression	Spg021601.1
Synteny	Spg021601.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAGTCAAATTGAGAACCAACATATTGCCGAATCAAGTCAAACCCGAGTCATAAAAAATCATGACAAAGGAAATACTACAGTGCAAGATGATCAACCACAGTGTTTTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATAATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCAAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCATTGAGACATGTGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTTGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAATCGTTAGCATGTTCGAGCTCACCAATACTGAACAACGAAAGGGTGAACTTGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGTAAAAATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTTTACATCCTTAAAGGTATAAAGTCTCGCACCTTTGAGGAACTAGCAACTCACGCTCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACGAAGAGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACAAATGGAATGCATCACTTAACTTTAAAGGAAAGACAAAAGAAAATCTATCCTTTCGCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAAGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAATAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAGACTTCAACCCAAGAGGAAAGGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCTTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACTTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAGTCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACTGCGGCGAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAAAATATAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATTTTGAACTACGTTATGACTTGATCCCTTTTCGTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAGGTTCAGTCTCTGCAAATAAAAAAAAATGTAACAAATATTGAAGCGCGATAAGACAAATTTAAGAAACTCATCACTACTGGGGGCAACACAACAAATGGAAGTTGTGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAAAAAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGGTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTCTCACGCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCATTTCGCTGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCACGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACATTGCTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTACACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTATTGTGCTACATTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTGTGCTGTTTTTTTTTTCTCCAAGTTTGAAAGTTTGCACCCTCTGCTGTTGCGCGCTGCTCCCTTCTCTCTCGCGGTTTGAAGGTTCTGACACTGCACTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA

mRNA sequence

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAGTCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACTGCGGCGAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGCTACGAGTTGGATGAAAAAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGGTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTCTCACGCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTACACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTATTGTGCTACATTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA

Coding sequence (CDS)

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAGTCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACTGCGGCGAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGCTACGAGTTGGATGAAAAAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGGTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTCTCACGCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTACACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTATTGTGCTACATTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA

Protein sequence

MGSTAHCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFELDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQVRCSTHPKFAVPSSKFERFSRAPLLQFIPPSSKVLTRFVAVPSPQVRRFSCGSLQFLLPKFEGSHTLRCSSFLKVLEGLTRGSHALRCSSFSPKFSKVLTRFAAVPSSKVRSTRFVAVPSFQFRRFSRVSLQFILSISKVPTRCAAVPSLKFEVPSLKFEGSHVFRCSSFSPRFSCTALQFLLPKFEGFHTLRYSSFSPSSKVLTLRCFLHHVRRFSRYTTSLFLLQVRRFSRYAASFSKFEGSHATLECVIVLHSSLSSKDPTLRCCVASFTKFEGSHAALLRCSFSKFEGSHAALLPSPSSKVFMLRSAALLRYFLKSEEHVLVLVQRRGGGKSTRNMSLYSCRRAWW

Homology

[Close]

BLAST of Spg021601.1 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-32
Identity = 88/165 (53.33%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I + D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 91  LEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 150

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +EE+QCPTST+ R SAF+RLS+STSKK +PSTS FD LK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTN 255

[Close]

BLAST of Spg021601.1 vs. NCBI nr
Match: KAA0063719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-32
Identity = 89/165 (53.94%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I E D+  +  K+VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 156 LEDHPKEILEVTACHTTSIAEVDNNYDSYKEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 215

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +EE+QCPTST+ R S F+RLS+STSKK +PSTS FD LK+TNDQ +R+M  L+ 
Sbjct: 216 LSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKFLKA 275

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Sbjct: 276 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTLKPRFIIFTN 320

[Close]

BLAST of Spg021601.1 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 9.4e-32
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 508 LEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 567

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS FD LK+TNDQ +R+M +L+ 
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRFIIFTN 672

[Close]

BLAST of Spg021601.1 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 9.4e-32
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 508 LEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 567

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS FD LK+TNDQ +R+M +L+ 
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRFIIFTN 672

[Close]

BLAST of Spg021601.1 vs. NCBI nr
Match: KAA0041771.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-31
Identity = 85/154 (55.19%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 81  IEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFT 140
           I E D+  +  +++DNS + +QRT VFDRIKP TTR SVFQR+SMA  KEE+QCPTST+ 
Sbjct: 356 IVEVDNNYDSYEEMDNSNEIKQRTFVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYA 415

Query: 141 RPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPS 200
           R SAF+RLS+STSKK +P TS FD LK+TNDQ +R+M  L+ K F E N  +K+ S + S
Sbjct: 416 RTSAFKRLSISTSKKHRPLTSAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVSS 475

Query: 201 RMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQ 235
           RMKRKFSV INTE +  +K    I  NL++   +
Sbjct: 476 RMKRKFSVDINTEDSLTVKPRFIIFTNLINEGDE 509

[Close]

BLAST of Spg021601.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-32
Identity = 88/165 (53.33%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I + D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 91  LEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 150

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +EE+QCPTST+ R SAF+RLS+STSKK +PSTS FD LK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTN 255

[Close]

BLAST of Spg021601.1 vs. ExPASy TrEMBL
Match: A0A5A7VDY3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002440 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-32
Identity = 89/165 (53.94%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I E D+  +  K+VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 156 LEDHPKEILEVTACHTTSIAEVDNNYDSYKEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 215

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +EE+QCPTST+ R S F+RLS+STSKK +PSTS FD LK+TNDQ +R+M  L+ 
Sbjct: 216 LSMATKEEENQCPTSTYARTSTFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKFLKA 275

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Sbjct: 276 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTLKPRFIIFTN 320

[Close]

BLAST of Spg021601.1 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-32
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 508 LEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 567

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS FD LK+TNDQ +R+M +L+ 
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRFIIFTN 672

[Close]

BLAST of Spg021601.1 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-32
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 63  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQR 122
           +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR
Sbjct: 508 LEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 567

Query: 123 MSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLEL 182
           +SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS FD LK+TNDQ +R+M +L+ 
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627

Query: 183 KLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN 228
           K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRFIIFTN 672

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BLAST of Spg021601.1 vs. ExPASy TrEMBL
Match: A0A5A7TJH2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001260 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.9e-32
Identity = 85/154 (55.19%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 81  IEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFT 140
           I E D+  +  +++DNS + +QRT VFDRIKP TTR SVFQR+SMA  KEE+QCPTST+ 
Sbjct: 356 IVEVDNNYDSYEEMDNSNEIKQRTFVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYA 415

Query: 141 RPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPS 200
           R SAF+RLS+STSKK +P TS FD LK+TNDQ +R+M  L+ K F E N  +K+ S + S
Sbjct: 416 RTSAFKRLSISTSKKHRPLTSAFDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVSS 475

Query: 201 RMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQ 235
           RMKRKFSV INTE +  +K    I  NL++   +
Sbjct: 476 RMKRKFSVDINTEDSLTVKPRFIIFTNLINEGDE 509

The following BLAST results are available for this feature:

BLAST of Spg021601.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	3.2e-32	53.33	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0063719.1	3.2e-32	53.94	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	9.4e-32	52.73	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	9.4e-32	52.73	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0041771.1	1.2e-31	55.19	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg021601.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021601.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	1.6e-32	53.33	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7VDY3	1.6e-32	53.94	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UI09	4.5e-32	52.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	4.5e-32	52.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TJH2	5.9e-32	55.19	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg021601.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg021601	Spg021601	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg021601.1-cds	Spg021601.1-cds-scaffold9:5935449..5935672	CDS
Spg021601.1-cds	Spg021601.1-cds-scaffold9:5935812..5936180	CDS
Spg021601.1-cds	Spg021601.1-cds-scaffold9:5936293..5936814	CDS
Spg021601.1-cds	Spg021601.1-cds-scaffold9:5937183..5937545	CDS
Spg021601.1-cds	Spg021601.1-cds-scaffold9:5938884..5939160	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg021601.1	Spg021601.1-protein	polypeptide