Spg017466.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg017466.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SWIM-type domain-containing protein
Location	scaffold4: 39798046 .. 39807268 (+)
Sequence length	1443
RNA-Seq Expression	Spg017466.1
Synteny	Spg017466.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTCTTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGACCGTTTTTGAATAGTTTTAAAGGTGGTGGTTGCATGGTAATAAATTGCAGCTCGTTTTCTTCTTGATTTATAACTCATATCCGAAAACTTCATCTCCCTCAAACAGCATCCTTCTATCTCAAACTCTCACTATCAAAATTTTAAAATCATCCCATTGAAGCCAACTTTTGTTTATCTGTGTGGAGATCGAATTTTACAATCACAACGAAGGAGCACGTCTTATTCATTAGTGGTATTTTCTATATTTCTACTTGTTGCTAATTACTTTGTATATTTTTTCTTGTTGCTAAATCCTTTGTATTCTCATGTATTATTTGTAGTGATAATGAGTTATGAATATTGTTTTGTATAGGAGAGACGCCGGAAAAGTAGAAGGGTTGTTGAAGCCAGCCGTGTGCATCTCTAATATTGTTTTGTTGGTCCTCTAATTTTTTTTCTTTTTTTTTTTCATTGTATTTGACGTCCATTTTTTTTTTCTGTTTTACTAGTGTTTTTATTTTTTTTACAGGACCAAAGTCTACTGATAAAAAAAAAGTTAACTACGATCTTTGAGCGCGAGGTTTAAATACAGTGTAGGATTTTTTCTATTTTTTCATTGTACTTTACGTCCGTTTTTTTTCTTGTTTTAGGTGTGTTTTTATACTGATTTTTTTTAGGACCTAACTCACAGATAAAAAAAAAAGTTGTCGACGATCTTTTGAGAGAGAAGATTTAAATACAGTGTAGGATTTTTTCTTAAGCATGTAAAAGGAATATACATTTTTTGTTTGCACTTATGTTGGAGAAAATAGACATTTGTATAAGTTTACAAATATGTGATGCATGAAAGTCGAGATTTATTTGCTGAGTTTATAATAAATGTTAGTCTTGATATGGTTTTGTTGAGGAAAATATTGATTTTTTTTTTCAAAATATAGAAGTTCTTTTTAAAATTTTGATATTTTTCAAAATACAGAAGTTGTTTTCCAAAGTATAGAAGCTTTAGTTTTTTCTCAATATATACAAAAGTGTGAAAATAAATCCTCATGAAGTTAATTGGTTCGAGTAGTTTGTTTAGGGTTTTTTATTCTAAAGTGTTAAAATAGAAAAATAATTTGTTGAATTGCATTATTCAAAATGGAAAAGAAGGGTTTTTAGGAAAAAAAAAATAGTTTCTAAGGTATTGAGAATGAATGTCATATTTGTTATGATTTTGTTAATATGATGCTTGGTTATCTTTTTACAGCAAAAACGTTAGATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGTATGTATTAATCAATAAAGTGTAAAATATTATTATTAGGGGAATGTTTATTAAATAATTTGTTGAAAAATATATATGGTAACGAACATAGTTAATATATACATTAATGCATGGAATTTATGTTTCTATAACAGTAATTATTTTCAATAGATGATATTTATTTTTTACATATAGAAATTATCCAAAAGAAGATTCAATTTTAATATAATTGATTGGATACAACAATCATCTTTTAAAATATAAATAATGTGTATATGTTGATAAAGTAGTAAAAAGGGTAAAAATAATTTGTTGAATTGCATTATTCAAAATGGAAAACAAGGGTTTTTAGAAAAAAAAAAAAAAATAGTTTCTAAGGTATTGAGAATAAATGTCATATTTGTTATGATATTGTTAAGCAAAATATTGAAATAAATTAATATGATGCTTGGTTGTCTTTTTACAGCAAAAACGTTAGATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGTATGTATTAATCAATAAAGTGTAAAATATTATTATTAGGGGAATGTTTATTAAATAATTTGTTGAAAAATATATATGGTAACGAACATAGTTAATATATACTAATGTATATATTAATATGGTAACGAACATAGTTAATATGGTAACGAACATACTAATGCATGGAATTTATGTTTCTATAACAGTAATTATTTTCAATAGATGATATTTATTTTTTACATATAGAAATTATCCAAAAGAAGATTCAATTTTAATATAATTGATTGGATACAACAATCATCTTTTAAAATATAAATAATGTGTATATGTTGATAAAATAGTAAAAAGGGGAAAATCATATTGTTTAAATTTGTCATAAACCAATACTTTTGTAGAAGTTCCTATGCTAAATTCGAAGCAATAGTGATCAAATAATTAAGATATGGATATTTTGAAAAAATAATTTGAAGTTCATATGCATTTAAACTACTAAAACCCTAAACCCTAAAAAACTACTAAAACCCTAAAAAACCCTAAACCCAACGAAGAAAACCCTAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCACTAAAACCATAAATTCTTAAAAACCCTAAATCTTCTAAACCCTAAAACTAAAACCCTAAAACCAAAACCTCTAAAAACCCTAACCCCTAAAACTCCTAACCCCTAAAACCCTAAACCCAAAACCCCTAAAAACCCTAAACCCTAAAACTCCTAACCCCTAAAACCCTATAACCAAAGCCCCTAAACACTAAAATTATCAAACTTTCAACAGGTATATTAGTAGACTATAAGCTAAACACTCAAAATCCAATTATAACCTTAAACCCTAAAACTAATCCCAACAAAGAAAACCCTAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCACTAAAACCATAAATTCTTAAAAACCCTAAATCTTCTAAACCCTAAAACTAAGACCCTAAAACCAAAACCTCTAAAAACCCTAACCCCTAAAACTCCTAACCCCTAAAACCCTAAAACCAAAACCCCTAAAAACCCTAAACCCTAAAACTCCTAACCCCTAAAACCCTATAACCAAAGCCCCTAAACACTAAAATTATCAAACTTTCAACAGGTATATTAGTAGACTATAAGCTAAACACTCAAAATCCAATTATAACCTTAAACCCTAAAAGTAATCCCAACAAAGAAAACCCTAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCACTAAAACCATAAATTCTTAAAAACCCTAAATCTTCTAAACCCTAAAACTAAAACCCTAAAACCAAAACCTCTAAAAACCCTAACCCCTAAAACTCCTAACCCCTAAAACCCTATAACCAAAACCCCTAAACACTAAAATTATCAAACTTTCAAAAGGTATATTAGTAGACTATAGGCTAAACACTCAAAATCCAAATATAACCTTAAACCCTAAAAACTAACCCCAACAAAGAAAACCATAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCAGTAAAACCTTAAATTCTTAAAAACCCTAAACCCTAAATCTTCTAAACCCTAAAACTAAAACCCTAAAACCAAAACCCCTAAAAACCCTAAACCCTAAAACCGAAACCCCTAAACCCTAAAATTATTAAACTTTCGAAATGTATATTAGTAAACACTCAAAATCCAAACATAACCATAAACCCTAAACCTTGAATTCTAACCACTAAAACCCTACCCTAAAGCCTAAATCTTAACCACCAAAACCCTAAACCCCTAAACCCTAAACCCAAAATCTTAACCACCAAAACCCTAAAACCCTACCCTAAAGCCTAAATCTTAACCACCAAAACCCTAAACCCCTAAACCCTAAACCCAGAATCTTAACCACCAAAACCTTTAAACCCGAAAAACGCTAAACCATAAAATACTAAGTCCTTAAAACCCCAAAAATCTCTAGACCTAAACTCTAAAACTCTAAAGACCTAGAGGACGTTGTCTAAGAATCATAAGCATTAAAAACCGTAATTCGAGAAATATCCCAAATCTTGTGTGAAATTCATAAGAATTAAAAACCATAATCCATAATTTTAGTATGTTTTAGTTGTTGACTTAGTTACTATTTCCTTCCAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTTGGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGATTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGGTATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCTGAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACAGAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAGATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTACGGTGTGCATGAAATCCCTTCATTTTTCACAGAGTTGGACATGAGAGCTATCGATTCCCTTCCTAACACGGGCATTGAAAGAGAAGCAAGAGGAGACGATTCATTGGTGAAAGGGATGATATATAAGTCGAAGAACGACTTAATGAACGCCGTTAAAAGCTACTCTATCATTCGACATCAACACTTTGACGTCGTTGAGTCGAAGAAAAAGGTGTGGGCAGTCAAATGTAAACGATACGGCGAAGGTTGTATGTGGCGCCTTCGTGCCTGTTGCCTTAAGAAACATGGCCAATTTGAAATCACACAATACAATGGGCCACATTCGTGTGTTTATGCTAGGTTGAGTCAAGACCATAGACAACTAGACTCAAACCTCATTGCAGCTGAAGTCCACAGCGTCGTCAAGAGCAATCCATCTATAGACATTCGAACATTACAGGAAATCGTAGTGCAAAAGTACGGATATTCTTTAAAATATTCGAAGGTATGGGATGGGAAGAAGAAAGCTATACAAAATGTCTTTGGAGATTGGGATGAATCGTATACGTTATTGCCATCTTGGACCAATATCCTAATGCTAACAAATCCTGGTACAAAAGTTGAATGGAGGTGGTACGAGACGGAGGGGAATAATAATGAAATAATATTTCGCAGTGTTTTCTGGTCGTTCGGTCCGGTTATCGAGGGTTTCAAACATTGTAGACCATTGCTTCAAATCGACGGAACACATCTGTATGGAAAATATAAGGGCAAGTTGTTGATTGCTACATCCGTTGATGCAGACGGACACATATACCCCGTTGCATATGCCATCGTACCAGAAGAAAGTTCCGATACATGGGGTTGGTTTTTAAAAACGCTCCGACAACATGTGGTCGGTGCGAGGGCCGATGGGATGTGTCTGATTTCAGATAGGCATAAGGGTATCATCTCGGCTGTACGTGACAAGGAGAACGGTTGGACTAATGCACACCATCGATTTTGTTTGCGACATCTTGCAAGCAACTTCAATGAACGGTACAAAGACAAGGTTTTGAAGAAGTTGGTGTACCGGGCTGGTTCGAAGTTTACAGTTACTAAGTTCAACCGTTGCATGCAAGAGCTTCAATCAATTAATAAGGAGTGCATGAGATTCTTTACTTCCTTAGATCCGACGCAGTGGACACAATCACACGATGGAGGACATCGCTATGGTTGGTTGACAACGAACGTAGCCGAGTGCACCAATGGGGTCTTAAAAGGAGCTAGAAAATTGCCCATCACTGCATTAGTTCAAGCCACATTCTATCGAACAGTAACATATTTCGCCACCCGACGACATGAAATACAGAAGTCTCTAAATTCTGGACAACAATTCACACGGTAAAAAATTTATATAACCCATAGTTCATAAGTTCTGCTTCATGAAACTCGATAATAATTTATGTCATTATGTTAGGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTATGATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAAAATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTTATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGTTCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAGACGAATGCAATAGTCTGTGAATGTTTCCAAACTTTTTGTTGCTATGTATTTAATATGTGTAACTTAAGTATTTATTTATGTGGATTAAAAATCACTCTATTACATGTGTGCAAACTCGCCTTCTTATTATTAATGAAACTAACATTAACTGTTAATATACTTAAATGTTGTTAGATGGGAGACAATGATATTACGACGGGTCCGTATGATCCATCAGTGCTACACCTACAGGCCAGTCATCGATCCGAACTGGTTTGGGAGGATGTCTACATCAATGCCATGCATTGTAGACGTCGCGAGGCCGTGTTGAAGAGGTTTTCTACTCCAGACCCTCGTATTGAGCCCTACTTACGGGCTTCTGGCTTTTATGGGGTATCATGCATTAGATTCATCCAGCTGGATTGGCACCTGATTACGACCATGGTCGAGCGTTGGCGCCAGGAGACACACACTTTCCACCTTCCACATGGGGAGTGTACAATCACGCTACAGGATGTCGCAATACAATTCGGGCTTCCTATAGACGGCAAAGCTTTGATCGGATTAGTGAACGCAGACTGGTCATTTATATGTCAAGACTTGATGGGTGTTACTCCTGGGAACCGTATGCTGGATGGAGGTCGCATAAGTCTATCATGGTTGGCCGAACAGTTTGACAATTTCACCCATCTTCCAGAGGATGCCGATGAACAAGACCTCCGACGGTACGCTCGAGCATACATTTTATCGCTCATCGGAGGCATGCTATTTCCTGATAAGTCCAACTCGAAAGTCCATCTAATGTATCTTTCGTTGCTTGAGGATTTTGATGAGGCTGGTACATATAGTTGGGGTGCGGGCTGTCTCGCCTGGTTGTATAGGAACCTTTGCAAAGGTTCAGTTATTGATGCAAGGGACCTAGGTGGTTCCCTAATTTTGTTGCAATTATGGACGTGGGATCGATTCCCGACGTTAGCACCGCGACGACGTCACCGGTTCGAGTACCAACTAGGAGATCGGCCTTTGGCAGTCCGGTAAAAACCTTTCGCGAATACAACTATATTTCTTTGTGTAAAACATGATACAACAAAACTAATATTCAATATTGTACTTTGTAGGTGGAATGATGAATTTTCAGTGATCAGGACGCCAACACATGTCCTAGTCCAATACAGATATATGTTGGACACGATTAGGCCAGATCAGGTATAGTTATGTTTACACAGTAATTTATTTATTTTTATCAACTTCTTCATTCCTAATTATGAATCTCAACTACAATTGCATTTTATCGTTGTGTAGATTATATGGGAGCCGTATCAACACCTCATTAATATGTTACCAGAGTACTGTCTAATCGGTCAGGACATTTGGACTAGCAGAAGTCCACTCATTTGCTTATTCGCAGTAGAGTGGCATTTCCCTGATCGTGTTATGAGACAGTTTGGGTGGGTGCAGCATATCCCCATACATTGTAACACAGACATGGTCCTGCACTCGTACAACTTACGAGGTCGTCATGAACGGGATTGGACTACTTATCTAGCTCCATCCATTCAAATATGGGAAGGGCGACGAGATATTATTATTCACGGGCAACCAACTGATGGGGGTGTTGATGTGAACCCACAATACGATCACTGGTTCGCAACTATCAGTCGTCGGTACCTCACGAAGGCAGGAGCCTCGTACCACTTCTTGGTAAGATTTCGTTAAAATAAGTAAGTTGAAAATATTACGTTATTATAAACTATGAACGTTCCATTGATTTCATTTTTTGTGTTCTAGTGTCAGGACCCCATAATGACGGAAGCACATAGAAGGGCCCTCCAACATATAACGAATATATACCACATCATACGTGAAAATGGAGGTGCCCCGGGTCAAAATGAAGATGATCCTATCCACCAACAAGCTGCTCCAGTGCAACAAGAGTATTACCCACAGGAGCAACACGTTGATGTAAATGATCATATCCAACAACAAACTGCCCCAGCTCAGCACCAATATGACCCACAGGAGCAACGTGTTGATCTCACTCAACAACATGATGATCCCCCATTGTTCCCATACGTGCCTTCACCACCCCTGATGTTTGAACAAACATTCCCAGAACTCTTCTCTTCCCCTAATTTCATGTTGCAAACACCTACATTCTTTGGAAATTGGGAAGAAGGTCAGTCTTCACATACTTACCATGCTCCGGAAGAACAGTATGTGACGTATCAAAATCCAAATCAGGGAATACACATCAGGGATGCAGGTGATACGACAAATACAAGAGGTCGGGGTGATCGAGGCCAATACGTAACTCACCGATCACGAGCTAGGCGCCATAGGACCCCATCTTCTAGTGAAGACCCATAA

mRNA sequence

ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTCTTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGACCATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTTGGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGATTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGGTATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCTGAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACAGAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAGATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTATGATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAAAATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTTATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGTTCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAGACGAATGCAATAG

Coding sequence (CDS)

ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTCTTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGACCATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTTGGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGATTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGGTATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCTGAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACAGAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAGATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTATGATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAAAATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTTATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGTTCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAGACGAATGCAATAG

Protein sequence

MRRSVKSRLYKRRDIVGKRNARDSVRNLWRDVTSRVSCRDATVLEPQRFSAPSHRQSSIVIHQSSVTSVFIFQTIESLILKFVEKNSKNIHTQGRCLKIIFSIIVIMEYVGFICYMGGNIVHGLNGIEYDVGPSVMINFHRDIAFEDFIQGLCNGLSIDRTRGLEVIFRYETKGFEGSTYYAPVSLRSEVDLRFMMTHAPSLPSRVELFISQPNNVSITPEVDYTHGQYYIPEQDYSQEVEGEDNLQLDDQNIHFSQNDGDGDDDDDDDYIPEQDSMVVTNDDVGTESDNDSTDEASDDSVEEAPQMYAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITMKGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHRASRRMQ

Homology

[Close]

BLAST of Spg017466.1 vs. NCBI nr
Match: RVW52006.1 (hypothetical protein CK203_068088 [Vitis vinifera])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-44
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 619 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 678

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 679 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMDVYACCYTPQFNPIPHQAYWPEPNFPIVH 738

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 739 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 786

[Close]

BLAST of Spg017466.1 vs. NCBI nr
Match: RVX19406.1 (hypothetical protein CK203_008540 [Vitis vinifera])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-44
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 592 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 651

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 652 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMEVYACCYTPQFNPIPHQAYWPEPNFPIVH 711

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 712 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 759

[Close]

BLAST of Spg017466.1 vs. NCBI nr
Match: RVW92351.1 (hypothetical protein CK203_032440 [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-41
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           Y I+ +  +E+RA+ H +++F     I +VTT+ +   M KG     VRL + +C CNKW
Sbjct: 561 YTINKMTKYESRASGHTVNIFHRSNEIFEVTTAPHGFHMDKGNNIQIVRLKERTCTCNKW 620

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +  C    +D  +F+  +Y++  Y  CY PQF PIPDQ+ WPEP+   V 
Sbjct: 621 QSFGIPCSHVLVVCTRARIDSWQFIDKHYRMDVYACCYTPQFNPIPDQAYWPEPNFPIVH 680

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR 469
            + + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNR
Sbjct: 681 HNPTLVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNR 722

[Close]

BLAST of Spg017466.1 vs. NCBI nr
Match: RVW83159.1 (hypothetical protein CK203_044939 [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 674 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 733

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 734 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 793

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 794 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 839

[Close]

BLAST of Spg017466.1 vs. NCBI nr
Match: RVW42770.1 (hypothetical protein CK203_079903 [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 471 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 530

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 531 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 590

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 591 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 636

[Close]

BLAST of Spg017466.1 vs. ExPASy TrEMBL
Match: A0A438KDW5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-45
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 592 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 651

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 652 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMEVYACCYTPQFNPIPHQAYWPEPNFPIVH 711

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 712 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 759

[Close]

BLAST of Spg017466.1 vs. ExPASy TrEMBL
Match: A0A438EWG2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-45
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 619 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 678

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 679 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMDVYACCYTPQFNPIPHQAYWPEPNFPIVH 738

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 739 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 786

[Close]

BLAST of Spg017466.1 vs. ExPASy TrEMBL
Match: A0A438I6L2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_032440 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-41
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           Y I+ +  +E+RA+ H +++F     I +VTT+ +   M KG     VRL + +C CNKW
Sbjct: 561 YTINKMTKYESRASGHTVNIFHRSNEIFEVTTAPHGFHMDKGNNIQIVRLKERTCTCNKW 620

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +  C    +D  +F+  +Y++  Y  CY PQF PIPDQ+ WPEP+   V 
Sbjct: 621 QSFGIPCSHVLVVCTRARIDSWQFIDKHYRMDVYACCYTPQFNPIPDQAYWPEPNFPIVH 680

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR 469
            + + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNR
Sbjct: 681 HNPTLVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNR 722

[Close]

BLAST of Spg017466.1 vs. ExPASy TrEMBL
Match: A0A438HFK5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 674 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 733

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 734 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 793

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 794 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 839

[Close]

BLAST of Spg017466.1 vs. ExPASy TrEMBL
Match: A0A438FUH8 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_057381 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0


Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 504 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 563

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 564 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 623

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 624 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 669

[Close]

BLAST of Spg017466.1 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-09
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 354 VRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPD 413
           V+L D +C C +++    PC HA+A C E+ ++ L++V   Y +  Y   Y  +F P+P+
Sbjct: 652 VQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKFSPVPE 711

Query: 414 QSCWPEPSG 423
            S WPE  G
Sbjct: 712 LSAWPEAYG 720

The following BLAST results are available for this feature:

BLAST of Spg017466.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW52006.1	1.8e-44	50.60	hypothetical protein CK203_068088 [Vitis vinifera]	[more]
RVX19406.1	1.8e-44	50.60	hypothetical protein CK203_008540 [Vitis vinifera]	[more]
RVW92351.1	4.1e-41	48.77	hypothetical protein CK203_032440 [Vitis vinifera]	[more]
RVW83159.1	3.6e-37	46.39	hypothetical protein CK203_044939 [Vitis vinifera]	[more]
RVW42770.1	3.6e-37	46.39	hypothetical protein CK203_079903 [Vitis vinifera]	[more]

BLAST of Spg017466.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg017466.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KDW5	8.5e-45	50.60	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 P...	[more]
A0A438EWG2	8.5e-45	50.60	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 P...	[more]
A0A438I6L2	2.0e-41	48.77	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_032440 P...	[more]
A0A438HFK5	1.7e-37	46.39	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 P...	[more]
A0A438FUH8	1.7e-37	46.39	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_057381 P...	[more]

BLAST of Spg017466.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	3.4e-09	36.23	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 359..386 e-value: 1.6E-8 score: 44.4
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 347..382 e-value: 6.0E-7 score: 29.0
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 352..384 score: 9.025227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..302

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg017466	Spg017466	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg017466.1-cds	Spg017466.1-cds-scaffold4:39798046..39798267	CDS
Spg017466.1-cds	Spg017466.1-cds-scaffold4:39799503..39799560	CDS
Spg017466.1-cds	Spg017466.1-cds-scaffold4:39802332..39802971	CDS
Spg017466.1-cds	Spg017466.1-cds-scaffold4:39804413..39804934	CDS
Spg017466.1-cds	Spg017466.1-cds-scaffold4:39806020..39806020	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg017466.1-three_prime_utr	Spg017466.1-three_prime_utr-scaffold4:39806021..39806107	three_prime_UTR
Spg017466.1-three_prime_utr	Spg017466.1-three_prime_utr-scaffold4:39806204..39806602	three_prime_UTR
Spg017466.1-three_prime_utr	Spg017466.1-three_prime_utr-scaffold4:39806690..39807268	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg017466.1	Spg017466.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding