Spg017466 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017466
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Locationscaffold4: 39798046 .. 39807268 (+)
RNA-Seq ExpressionSpg017466
SyntenySpg017466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTCTTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGACCGTTTTTGAATAGTTTTAAAGGTGGTGGTTGCATGGTAATAAATTGCAGCTCGTTTTCTTCTTGATTTATAACTCATATCCGAAAACTTCATCTCCCTCAAACAGCATCCTTCTATCTCAAACTCTCACTATCAAAATTTTAAAATCATCCCATTGAAGCCAACTTTTGTTTATCTGTGTGGAGATCGAATTTTACAATCACAACGAAGGAGCACGTCTTATTCATTAGTGGTATTTTCTATATTTCTACTTGTTGCTAATTACTTTGTATATTTTTTCTTGTTGCTAAATCCTTTGTATTCTCATGTATTATTTGTAGTGATAATGAGTTATGAATATTGTTTTGTATAGGAGAGACGCCGGAAAAGTAGAAGGGTTGTTGAAGCCAGCCGTGTGCATCTCTAATATTGTTTTGTTGGTCCTCTAATTTTTTTTCTTTTTTTTTTTCATTGTATTTGACGTCCATTTTTTTTTTCTGTTTTACTAGTGTTTTTATTTTTTTTACAGGACCAAAGTCTACTGATAAAAAAAAAGTTAACTACGATCTTTGAGCGCGAGGTTTAAATACAGTGTAGGATTTTTTCTATTTTTTCATTGTACTTTACGTCCGTTTTTTTTCTTGTTTTAGGTGTGTTTTTATACTGATTTTTTTTAGGACCTAACTCACAGATAAAAAAAAAAGTTGTCGACGATCTTTTGAGAGAGAAGATTTAAATACAGTGTAGGATTTTTTCTTAAGCATGTAAAAGGAATATACATTTTTTGTTTGCACTTATGTTGGAGAAAATAGACATTTGTATAAGTTTACAAATATGTGATGCATGAAAGTCGAGATTTATTTGCTGAGTTTATAATAAATGTTAGTCTTGATATGGTTTTGTTGAGGAAAATATTGATTTTTTTTTTCAAAATATAGAAGTTCTTTTTAAAATTTTGATATTTTTCAAAATACAGAAGTTGTTTTCCAAAGTATAGAAGCTTTAGTTTTTTCTCAATATATACAAAAGTGTGAAAATAAATCCTCATGAAGTTAATTGGTTCGAGTAGTTTGTTTAGGGTTTTTTATTCTAAAGTGTTAAAATAGAAAAATAATTTGTTGAATTGCATTATTCAAAATGGAAAAGAAGGGTTTTTAGGAAAAAAAAAATAGTTTCTAAGGTATTGAGAATGAATGTCATATTTGTTATGATTTTGTTAATATGATGCTTGGTTATCTTTTTACAGCAAAAACGTTAGATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGTATGTATTAATCAATAAAGTGTAAAATATTATTATTAGGGGAATGTTTATTAAATAATTTGTTGAAAAATATATATGGTAACGAACATAGTTAATATATACATTAATGCATGGAATTTATGTTTCTATAACAGTAATTATTTTCAATAGATGATATTTATTTTTTACATATAGAAATTATCCAAAAGAAGATTCAATTTTAATATAATTGATTGGATACAACAATCATCTTTTAAAATATAAATAATGTGTATATGTTGATAAAGTAGTAAAAAGGGTAAAAATAATTTGTTGAATTGCATTATTCAAAATGGAAAACAAGGGTTTTTAGAAAAAAAAAAAAAAATAGTTTCTAAGGTATTGAGAATAAATGTCATATTTGTTATGATATTGTTAAGCAAAATATTGAAATAAATTAATATGATGCTTGGTTGTCTTTTTACAGCAAAAACGTTAGATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGTATGTATTAATCAATAAAGTGTAAAATATTATTATTAGGGGAATGTTTATTAAATAATTTGTTGAAAAATATATATGGTAACGAACATAGTTAATATATACTAATGTATATATTAATATGGTAACGAACATAGTTAATATGGTAACGAACATACTAATGCATGGAATTTATGTTTCTATAACAGTAATTATTTTCAATAGATGATATTTATTTTTTACATATAGAAATTATCCAAAAGAAGATTCAATTTTAATATAATTGATTGGATACAACAATCATCTTTTAAAATATAAATAATGTGTATATGTTGATAAAATAGTAAAAAGGGGAAAATCATATTGTTTAAATTTGTCATAAACCAATACTTTTGTAGAAGTTCCTATGCTAAATTCGAAGCAATAGTGATCAAATAATTAAGATATGGATATTTTGAAAAAATAATTTGAAGTTCATATGCATTTAAACTACTAAAACCCTAAACCCTAAAAAACTACTAAAACCCTAAAAAACCCTAAACCCAACGAAGAAAACCCTAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCACTAAAACCATAAATTCTTAAAAACCCTAAATCTTCTAAACCCTAAAACTAAAACCCTAAAACCAAAACCTCTAAAAACCCTAACCCCTAAAACTCCTAACCCCTAAAACCCTAAACCCAAAACCCCTAAAAACCCTAAACCCTAAAACTCCTAACCCCTAAAACCCTATAACCAAAGCCCCTAAACACTAAAATTATCAAACTTTCAACAGGTATATTAGTAGACTATAAGCTAAACACTCAAAATCCAATTATAACCTTAAACCCTAAAACTAATCCCAACAAAGAAAACCCTAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCACTAAAACCATAAATTCTTAAAAACCCTAAATCTTCTAAACCCTAAAACTAAGACCCTAAAACCAAAACCTCTAAAAACCCTAACCCCTAAAACTCCTAACCCCTAAAACCCTAAAACCAAAACCCCTAAAAACCCTAAACCCTAAAACTCCTAACCCCTAAAACCCTATAACCAAAGCCCCTAAACACTAAAATTATCAAACTTTCAACAGGTATATTAGTAGACTATAAGCTAAACACTCAAAATCCAATTATAACCTTAAACCCTAAAAGTAATCCCAACAAAGAAAACCCTAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCACTAAAACCATAAATTCTTAAAAACCCTAAATCTTCTAAACCCTAAAACTAAAACCCTAAAACCAAAACCTCTAAAAACCCTAACCCCTAAAACTCCTAACCCCTAAAACCCTATAACCAAAACCCCTAAACACTAAAATTATCAAACTTTCAAAAGGTATATTAGTAGACTATAGGCTAAACACTCAAAATCCAAATATAACCTTAAACCCTAAAAACTAACCCCAACAAAGAAAACCATAAAAAACCTAAACCCTTACAAACTACTAAAACCCTAAACCCTAAAAAACCATAAACCCTACATCTCAACCAGTAAAACCTTAAATTCTTAAAAACCCTAAACCCTAAATCTTCTAAACCCTAAAACTAAAACCCTAAAACCAAAACCCCTAAAAACCCTAAACCCTAAAACCGAAACCCCTAAACCCTAAAATTATTAAACTTTCGAAATGTATATTAGTAAACACTCAAAATCCAAACATAACCATAAACCCTAAACCTTGAATTCTAACCACTAAAACCCTACCCTAAAGCCTAAATCTTAACCACCAAAACCCTAAACCCCTAAACCCTAAACCCAAAATCTTAACCACCAAAACCCTAAAACCCTACCCTAAAGCCTAAATCTTAACCACCAAAACCCTAAACCCCTAAACCCTAAACCCAGAATCTTAACCACCAAAACCTTTAAACCCGAAAAACGCTAAACCATAAAATACTAAGTCCTTAAAACCCCAAAAATCTCTAGACCTAAACTCTAAAACTCTAAAGACCTAGAGGACGTTGTCTAAGAATCATAAGCATTAAAAACCGTAATTCGAGAAATATCCCAAATCTTGTGTGAAATTCATAAGAATTAAAAACCATAATCCATAATTTTAGTATGTTTTAGTTGTTGACTTAGTTACTATTTCCTTCCAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTTGGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGATTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGGTATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCTGAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACAGAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAGATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTACGGTGTGCATGAAATCCCTTCATTTTTCACAGAGTTGGACATGAGAGCTATCGATTCCCTTCCTAACACGGGCATTGAAAGAGAAGCAAGAGGAGACGATTCATTGGTGAAAGGGATGATATATAAGTCGAAGAACGACTTAATGAACGCCGTTAAAAGCTACTCTATCATTCGACATCAACACTTTGACGTCGTTGAGTCGAAGAAAAAGGTGTGGGCAGTCAAATGTAAACGATACGGCGAAGGTTGTATGTGGCGCCTTCGTGCCTGTTGCCTTAAGAAACATGGCCAATTTGAAATCACACAATACAATGGGCCACATTCGTGTGTTTATGCTAGGTTGAGTCAAGACCATAGACAACTAGACTCAAACCTCATTGCAGCTGAAGTCCACAGCGTCGTCAAGAGCAATCCATCTATAGACATTCGAACATTACAGGAAATCGTAGTGCAAAAGTACGGATATTCTTTAAAATATTCGAAGGTATGGGATGGGAAGAAGAAAGCTATACAAAATGTCTTTGGAGATTGGGATGAATCGTATACGTTATTGCCATCTTGGACCAATATCCTAATGCTAACAAATCCTGGTACAAAAGTTGAATGGAGGTGGTACGAGACGGAGGGGAATAATAATGAAATAATATTTCGCAGTGTTTTCTGGTCGTTCGGTCCGGTTATCGAGGGTTTCAAACATTGTAGACCATTGCTTCAAATCGACGGAACACATCTGTATGGAAAATATAAGGGCAAGTTGTTGATTGCTACATCCGTTGATGCAGACGGACACATATACCCCGTTGCATATGCCATCGTACCAGAAGAAAGTTCCGATACATGGGGTTGGTTTTTAAAAACGCTCCGACAACATGTGGTCGGTGCGAGGGCCGATGGGATGTGTCTGATTTCAGATAGGCATAAGGGTATCATCTCGGCTGTACGTGACAAGGAGAACGGTTGGACTAATGCACACCATCGATTTTGTTTGCGACATCTTGCAAGCAACTTCAATGAACGGTACAAAGACAAGGTTTTGAAGAAGTTGGTGTACCGGGCTGGTTCGAAGTTTACAGTTACTAAGTTCAACCGTTGCATGCAAGAGCTTCAATCAATTAATAAGGAGTGCATGAGATTCTTTACTTCCTTAGATCCGACGCAGTGGACACAATCACACGATGGAGGACATCGCTATGGTTGGTTGACAACGAACGTAGCCGAGTGCACCAATGGGGTCTTAAAAGGAGCTAGAAAATTGCCCATCACTGCATTAGTTCAAGCCACATTCTATCGAACAGTAACATATTTCGCCACCCGACGACATGAAATACAGAAGTCTCTAAATTCTGGACAACAATTCACACGGTAAAAAATTTATATAACCCATAGTTCATAAGTTCTGCTTCATGAAACTCGATAATAATTTATGTCATTATGTTAGGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTATGATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAAAATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTTATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGTTCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAGACGAATGCAATAGTCTGTGAATGTTTCCAAACTTTTTGTTGCTATGTATTTAATATGTGTAACTTAAGTATTTATTTATGTGGATTAAAAATCACTCTATTACATGTGTGCAAACTCGCCTTCTTATTATTAATGAAACTAACATTAACTGTTAATATACTTAAATGTTGTTAGATGGGAGACAATGATATTACGACGGGTCCGTATGATCCATCAGTGCTACACCTACAGGCCAGTCATCGATCCGAACTGGTTTGGGAGGATGTCTACATCAATGCCATGCATTGTAGACGTCGCGAGGCCGTGTTGAAGAGGTTTTCTACTCCAGACCCTCGTATTGAGCCCTACTTACGGGCTTCTGGCTTTTATGGGGTATCATGCATTAGATTCATCCAGCTGGATTGGCACCTGATTACGACCATGGTCGAGCGTTGGCGCCAGGAGACACACACTTTCCACCTTCCACATGGGGAGTGTACAATCACGCTACAGGATGTCGCAATACAATTCGGGCTTCCTATAGACGGCAAAGCTTTGATCGGATTAGTGAACGCAGACTGGTCATTTATATGTCAAGACTTGATGGGTGTTACTCCTGGGAACCGTATGCTGGATGGAGGTCGCATAAGTCTATCATGGTTGGCCGAACAGTTTGACAATTTCACCCATCTTCCAGAGGATGCCGATGAACAAGACCTCCGACGGTACGCTCGAGCATACATTTTATCGCTCATCGGAGGCATGCTATTTCCTGATAAGTCCAACTCGAAAGTCCATCTAATGTATCTTTCGTTGCTTGAGGATTTTGATGAGGCTGGTACATATAGTTGGGGTGCGGGCTGTCTCGCCTGGTTGTATAGGAACCTTTGCAAAGGTTCAGTTATTGATGCAAGGGACCTAGGTGGTTCCCTAATTTTGTTGCAATTATGGACGTGGGATCGATTCCCGACGTTAGCACCGCGACGACGTCACCGGTTCGAGTACCAACTAGGAGATCGGCCTTTGGCAGTCCGGTAAAAACCTTTCGCGAATACAACTATATTTCTTTGTGTAAAACATGATACAACAAAACTAATATTCAATATTGTACTTTGTAGGTGGAATGATGAATTTTCAGTGATCAGGACGCCAACACATGTCCTAGTCCAATACAGATATATGTTGGACACGATTAGGCCAGATCAGGTATAGTTATGTTTACACAGTAATTTATTTATTTTTATCAACTTCTTCATTCCTAATTATGAATCTCAACTACAATTGCATTTTATCGTTGTGTAGATTATATGGGAGCCGTATCAACACCTCATTAATATGTTACCAGAGTACTGTCTAATCGGTCAGGACATTTGGACTAGCAGAAGTCCACTCATTTGCTTATTCGCAGTAGAGTGGCATTTCCCTGATCGTGTTATGAGACAGTTTGGGTGGGTGCAGCATATCCCCATACATTGTAACACAGACATGGTCCTGCACTCGTACAACTTACGAGGTCGTCATGAACGGGATTGGACTACTTATCTAGCTCCATCCATTCAAATATGGGAAGGGCGACGAGATATTATTATTCACGGGCAACCAACTGATGGGGGTGTTGATGTGAACCCACAATACGATCACTGGTTCGCAACTATCAGTCGTCGGTACCTCACGAAGGCAGGAGCCTCGTACCACTTCTTGGTAAGATTTCGTTAAAATAAGTAAGTTGAAAATATTACGTTATTATAAACTATGAACGTTCCATTGATTTCATTTTTTGTGTTCTAGTGTCAGGACCCCATAATGACGGAAGCACATAGAAGGGCCCTCCAACATATAACGAATATATACCACATCATACGTGAAAATGGAGGTGCCCCGGGTCAAAATGAAGATGATCCTATCCACCAACAAGCTGCTCCAGTGCAACAAGAGTATTACCCACAGGAGCAACACGTTGATGTAAATGATCATATCCAACAACAAACTGCCCCAGCTCAGCACCAATATGACCCACAGGAGCAACGTGTTGATCTCACTCAACAACATGATGATCCCCCATTGTTCCCATACGTGCCTTCACCACCCCTGATGTTTGAACAAACATTCCCAGAACTCTTCTCTTCCCCTAATTTCATGTTGCAAACACCTACATTCTTTGGAAATTGGGAAGAAGGTCAGTCTTCACATACTTACCATGCTCCGGAAGAACAGTATGTGACGTATCAAAATCCAAATCAGGGAATACACATCAGGGATGCAGGTGATACGACAAATACAAGAGGTCGGGGTGATCGAGGCCAATACGTAACTCACCGATCACGAGCTAGGCGCCATAGGACCCCATCTTCTAGTGAAGACCCATAA

mRNA sequence

ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTCTTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGACCATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTTGGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGATTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGGTATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCTGAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACAGAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAGATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTATGATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAAAATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTTATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGTTCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAGACGAATGCAATAG

Coding sequence (CDS)

ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTCTTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGACCATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTTGGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGATTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGGTATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCTGAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACAGAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAGATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTATGATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAAAATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTTATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGTTCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAGACGAATGCAATAG

Protein sequence

MRRSVKSRLYKRRDIVGKRNARDSVRNLWRDVTSRVSCRDATVLEPQRFSAPSHRQSSIVIHQSSVTSVFIFQTIESLILKFVEKNSKNIHTQGRCLKIIFSIIVIMEYVGFICYMGGNIVHGLNGIEYDVGPSVMINFHRDIAFEDFIQGLCNGLSIDRTRGLEVIFRYETKGFEGSTYYAPVSLRSEVDLRFMMTHAPSLPSRVELFISQPNNVSITPEVDYTHGQYYIPEQDYSQEVEGEDNLQLDDQNIHFSQNDGDGDDDDDDDYIPEQDSMVVTNDDVGTESDNDSTDEASDDSVEEAPQMYAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITMKGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHRASRRMQ
Homology
[Close]
BLAST of Spg017466 vs. NCBI nr
Match: RVW52006.1 (hypothetical protein CK203_068088 [Vitis vinifera])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-44
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 619 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 678

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 679 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMDVYACCYTPQFNPIPHQAYWPEPNFPIVH 738

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 739 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 786

[Close]
BLAST of Spg017466 vs. NCBI nr
Match: RVX19406.1 (hypothetical protein CK203_008540 [Vitis vinifera])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-44
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 592 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 651

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 652 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMEVYACCYTPQFNPIPHQAYWPEPNFPIVH 711

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 712 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 759

[Close]
BLAST of Spg017466 vs. NCBI nr
Match: RVW92351.1 (hypothetical protein CK203_032440 [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-41
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           Y I+ +  +E+RA+ H +++F     I +VTT+ +   M KG     VRL + +C CNKW
Sbjct: 561 YTINKMTKYESRASGHTVNIFHRSNEIFEVTTAPHGFHMDKGNNIQIVRLKERTCTCNKW 620

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +  C    +D  +F+  +Y++  Y  CY PQF PIPDQ+ WPEP+   V 
Sbjct: 621 QSFGIPCSHVLVVCTRARIDSWQFIDKHYRMDVYACCYTPQFNPIPDQAYWPEPNFPIVH 680

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR 469
            + + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNR
Sbjct: 681 HNPTLVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNR 722

[Close]
BLAST of Spg017466 vs. NCBI nr
Match: RVW83159.1 (hypothetical protein CK203_044939 [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 674 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 733

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 734 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 793

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 794 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 839

[Close]
BLAST of Spg017466 vs. NCBI nr
Match: RVW42770.1 (hypothetical protein CK203_079903 [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 471 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 530

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 531 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 590

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 591 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 636

[Close]
BLAST of Spg017466 vs. ExPASy TrEMBL
Match: A0A438KDW5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-45
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 592 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 651

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 652 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMEVYACCYTPQFNPIPHQAYWPEPNFPIVH 711

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 712 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 759

[Close]
BLAST of Spg017466 vs. ExPASy TrEMBL
Match: A0A438EWG2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-45
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW
Sbjct: 619 YAINKITKYQSRANGHTANIFHRSNEIFEVTTAPHGFHMDKGNNIQIVKLKERTCTCNKW 678

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A C    +D  +FV  +Y++  Y  CY PQF PIP Q+ WPEP+   V 
Sbjct: 679 QSFGIPCSHVLAVCARARIDSWQFVDKHYRMDVYACCYTPQFNPIPHQAYWPEPNFPIVH 738

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR 475
           P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Sbjct: 739 PNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNR 786

[Close]
BLAST of Spg017466 vs. ExPASy TrEMBL
Match: A0A438I6L2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_032440 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-41
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           Y I+ +  +E+RA+ H +++F     I +VTT+ +   M KG     VRL + +C CNKW
Sbjct: 561 YTINKMTKYESRASGHTVNIFHRSNEIFEVTTAPHGFHMDKGNNIQIVRLKERTCTCNKW 620

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +  C    +D  +F+  +Y++  Y  CY PQF PIPDQ+ WPEP+   V 
Sbjct: 621 QSFGIPCSHVLVVCTRARIDSWQFIDKHYRMDVYACCYTPQFNPIPDQAYWPEPNFPIVH 680

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR 469
            + + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNR
Sbjct: 681 HNPTLVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNR 722

[Close]
BLAST of Spg017466 vs. ExPASy TrEMBL
Match: A0A438HFK5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 674 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 733

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 734 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 793

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 794 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 839

[Close]
BLAST of Spg017466 vs. ExPASy TrEMBL
Match: A0A438FUH8 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_057381 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-37
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 0 

Query: 308 YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKW 367
           YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW
Sbjct: 504 YAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKW 563

Query: 368 KIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVV 427
           + +GIPCSH +A    + +D  + V+ YY+L  Y +CY P+F PIP +S WP P    + 
Sbjct: 564 QSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILH 623

Query: 428 PDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP 473
           PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Sbjct: 624 PDPTSMRDKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCP 669

[Close]
BLAST of Spg017466 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-09
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0 

Query: 354 VRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPD 413
           V+L D +C C +++    PC HA+A C E+ ++ L++V   Y +  Y   Y  +F P+P+
Sbjct: 652 VQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKFSPVPE 711

Query: 414 QSCWPEPSG 423
            S WPE  G
Sbjct: 712 LSAWPEAYG 720

The following BLAST results are available for this feature:
BLAST of Spg017466 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW52006.11.8e-4450.60hypothetical protein CK203_068088 [Vitis vinifera][more]
RVX19406.11.8e-4450.60hypothetical protein CK203_008540 [Vitis vinifera][more]
RVW92351.14.1e-4148.77hypothetical protein CK203_032440 [Vitis vinifera][more]
RVW83159.13.6e-3746.39hypothetical protein CK203_044939 [Vitis vinifera][more]
RVW42770.13.6e-3746.39hypothetical protein CK203_079903 [Vitis vinifera][more]
BLAST of Spg017466 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg017466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438KDW58.5e-4550.60SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 P... [more]
A0A438EWG28.5e-4550.60SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 P... [more]
A0A438I6L22.0e-4148.77SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_032440 P... [more]
A0A438HFK51.7e-3746.39SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 P... [more]
A0A438FUH81.7e-3746.39SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_057381 P... [more]
BLAST of Spg017466 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G49920.13.4e-0936.23MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 359..386
e-value: 1.6E-8
score: 44.4
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 347..382
e-value: 6.0E-7
score: 29.0
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 352..384
score: 9.025227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 287..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..302

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017466.1Spg017466.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding