Spg015470.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg015470.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 10383095 .. 10383950 (-)
Sequence length	579
RNA-Seq Expression	Spg015470.1
Synteny	Spg015470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGCTTCTCTTCAGTGGACATCAACGGGGTGTACAAGATTAAAGCACCCTTACATCCAAGAGGAAATGATGCCATCAGGAACCCCTCGGCCAAGCAGATGAAAGATGCACTGAAATTAGTGGCCAACAAGGGAGTTCAGTGGAAAGAATCCCAGACAAAGGTGAAGACACTAGTTCTAGGCGACCTAAAGCCTGAATCTACAGTATGGATTTTATAAAGAACCGATTGATGTCAAACACCCATGACAACACCATCTCAGTGGACAGAGTTATGCTCCTCTACTGTATTATGAAGGGGTTGGAGATTAACATCGGGAGCATTATCACGGAGGAAATTCTTGCATGTGCAAGGAAAAGAGTAGGAAAGCTTTTCTTTGGATCATTGATCACCCAGCTTTGTTAGAGGGTAAAGATAGTTCCTGGTAAGAACGAGGAGCATCACTTCTTCAAGCCTACCATCGACCTATCCTTGATCGGGAAGCTTCAACAGAATAGCATCCAAAGAAAAGACAAAGCCTCCACATCTCAAGCCACCCAACCATCAGGGCTGAACATGCCTTCTCCATCCTAGCACCTTTTTTAGGGCTCTCACCGTCATCTGAAGCCCTAGCAATTGCCTACCGACAGCTGGATCAACTCAGGGACAACCTGAGGACTTATTGGGCATATTCCAAGGAGAGGGATGAAGCCATTAGAGGGTTCTACCTCTTTATCACCCCGAGTATTGCTCCTGTCTTTCTCGATTTCCCTAAATCGCTGCTGCCTCAAGAAGACAAGGATTCAGATGAAGAAGATGAGGAAAATGATGAAGATGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

mRNA sequence

ATGGTCAGCTTCTCTTCAGTGGACATCAACGGGGTGTACAAGATTAAAGCACCCTTACATCCAAGAGGAAATGATGCCATCAGGAACCCCTCGGCCAAGCAGATGAAAGATGCACTGAAATTAGTGGCCAACAAGGGAGTTCAGTGGAAAGAATCCCAGACAAAGGTGAAGACACTAGTTCTAGGCGACCTAAAGCCTGAATCTACAGGGTTGGAGATTAACATCGGGAGCATTATCACGGAGGAAATTCTTGCATGTGCAAGGAAAAGAGTAGGAAAGCTTTTCTTTGGATCATTGATCACCCAGCTTTGGCTCTCACCGTCATCTGAAGCCCTAGCAATTGCCTACCGACAGCTGGATCAACTCAGGGACAACCTGAGGACTTATTGGGCATATTCCAAGGAGAGGGATGAAGCCATTAGAGGGTTCTACCTCTTTATCACCCCGAGTATTGCTCCTGTCTTTCTCGATTTCCCTAAATCGCTGCTGCCTCAAGAAGACAAGGATTCAGATGAAGAAGATGAGGAAAATGATGAAGATGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

Coding sequence (CDS)

ATGGTCAGCTTCTCTTCAGTGGACATCAACGGGGTGTACAAGATTAAAGCACCCTTACATCCAAGAGGAAATGATGCCATCAGGAACCCCTCGGCCAAGCAGATGAAAGATGCACTGAAATTAGTGGCCAACAAGGGAGTTCAGTGGAAAGAATCCCAGACAAAGGTGAAGACACTAGTTCTAGGCGACCTAAAGCCTGAATCTACAGGGTTGGAGATTAACATCGGGAGCATTATCACGGAGGAAATTCTTGCATGTGCAAGGAAAAGAGTAGGAAAGCTTTTCTTTGGATCATTGATCACCCAGCTTTGGCTCTCACCGTCATCTGAAGCCCTAGCAATTGCCTACCGACAGCTGGATCAACTCAGGGACAACCTGAGGACTTATTGGGCATATTCCAAGGAGAGGGATGAAGCCATTAGAGGGTTCTACCTCTTTATCACCCCGAGTATTGCTCCTGTCTTTCTCGATTTCCCTAAATCGCTGCTGCCTCAAGAAGACAAGGATTCAGATGAAGAAGATGAGGAAAATGATGAAGATGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGACTAG

Protein sequence

MVSFSSVDINGVYKIKAPLHPRGNDAIRNPSAKQMKDALKLVANKGVQWKESQTKVKTLVLGDLKPESTGLEINIGSIITEEILACARKRVGKLFFGSLITQLWLSPSSEALAIAYRQLDQLRDNLRTYWAYSKERDEAIRGFYLFITPSIAPVFLDFPKSLLPQEDKDSDEEDEENDEDEDEEKESSSDED

Homology

The following BLAST results are available for this feature:

BLAST of Spg015470.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015470.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015470.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015470.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..192

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg015470	Spg015470	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg015470.1-cds	Spg015470.1-cds-scaffold10:10383095..10383363	CDS
Spg015470.1-cds	Spg015470.1-cds-scaffold10:10383549..10383651	CDS
Spg015470.1-cds	Spg015470.1-cds-scaffold10:10383744..10383950	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg015470.1	Spg015470.1-protein	polypeptide