Spg012099.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg012099.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Location	scaffold1: 4070486 .. 4072392 (+)
Sequence length	606
RNA-Seq Expression	Spg012099.1
Synteny	Spg012099.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCAAGATTTGGGGTATCCATATATATATATTTTTTTATTACACCAAGATTTAGGTTGGAGGGATTCAAACTTCTGACCTCTTAATCAAAGATACATGTCAATTACTGCTGAAGTATGTTCACGGTAGACAGCTGATGTAATTTGACATAGTGATAGTGAGAACTTCACTTGTCCTAGACACTAGAGAGATATTTGAAATGCTTGAGGTGGATGTAAAAGATATTTTCCAATTCGTACAGAAAGCATAAGATTTAGAGCTCTCTCTCTCTGGTTCCAGTTTTCTTCTGAAGCAATTAGATAAAGCTCGAGATTATCTATGGAATCATCTGCAAGGATTCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTCGAACAGAAGCAATTTGTCTCCAGTTTGGCCAAAAAAGCCGAAAGCCTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGTGGGTTCTATTTCTCTCTCTCTCTTTCTTTCTGTCTTTGTATTTGGGATACAAATTTTTTCATTTATGTTGAAATTTAGGGTTTGGAGAAGCGTCACCTGAAGCAAAGGCAGCCAAAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTCGCTCTTCAATTTCTTTGTTTTAATTGTTCTGTCATGTTGTGTGGATTTTCATTGGTATTCATTCTTGTTCTGGTAGAGCAGAGCTATAATCTAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTCCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAGAGTCTTGGTAAAACCCAAATCTATTCTATTTCTGTAGCTTGGCCTAAATAAACAATATGAACTTGTTAGGGAACAACATGCACAAAAATAGATTCTTTAGGAATATACAGAAAGAGGAATGAAATGCATGATCTTCATTCCGGTGTTCTTCTTGGTTTCCTTGAGCCAAACCCTGTCATCAGCAAGGGAAGCCAAGTGTTAATAGATACTAATTTAGTCAAGAATGAAGAGAAATGAAGTTTATTGTTGATCAAGTTTCATGTTTGTGCTTTGACTCTCGTGTCCTGTTCTAACAATGAGCCTTCAAATCATGGTCTAACAAATGGCTGGGGCAGCATTGCGCATACTAGAGGTGAGTTCTGTACACTTGAGAGTTGATTAATGCTTCCCAGTGAAAAACACTCATAAGTAAGCAAATCACTGATTCCAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCTTTCAAAGTAAGAAAATTGGTCTCTTTCTCTAAAATTTTCCTAACAGCATCATGTTCAGTTGTTTGCTACCCCCTACTGAGATTCATTATTTTACAGATGGTTGATGAATCCAACACGAGACTGATGAGGGAATATGTCACAGAGACAAGTCCATCGGATACTGAGAAGTGACAAAATTCTGCACCTTCTTCTCTTTTTGCAGTTATATAGGAGAGGATATATAAATTCATTGTGTTTATAGTATGATATGAGAGAACATTGTGCAACTCAGCTTGTCAGGGCTTTATACCAAACAAAAATTGACGAGCCCAATAATAGAAATATATATAGAGACATTCATTCTGAATTCTTCTTGCGAGCAACAAAACAATACCTATCACGATTTAGATTACTCAAATGTTGCAAAGTTTTCAAAGTACTCACCCGTTGCCAAGTGATTAAGGACACCTCACCTCAAATTTCAGAAAATTGAATCAGCTCCAGTCTGAATCATTGTCTTGCGGTTTGCATGTAGATAAATAATACGGTAGACTATATAATATGCTTAAAAGAAACCAGAGGATCAATAAGAATCAAG

mRNA sequence

ATGGAATCATCTGCAAGGATTCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTCGAACAGAAGCAATTTGTCTCCAGTTTGGCCAAAAAAGCCGAAAGCCTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCACCTGAAGCAAAGGCAGCCAAAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTCGCTCTTCAATTTCTTTGTTTTAATTGTTCTGTCATGTTGTGTGGATTTTCATTGGTATTCATTCTTGTTCTGGTAGAGCAGAGCTATAATCTAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTCCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTGATGAATCCAACACGAGACTGATGAGGGAATATGTCACAGAGACAAGTCCATCGGATACTGAGAAGTGA

Coding sequence (CDS)

ATGGAATCATCTGCAAGGATTCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTCGAACAGAAGCAATTTGTCTCCAGTTTGGCCAAAAAAGCCGAAAGCCTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCACCTGAAGCAAAGGCAGCCAAAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTCGCTCTTCAATTTCTTTGTTTTAATTGTTCTGTCATGTTGTGTGGATTTTCATTGGTATTCATTCTTGTTCTGGTAGAGCAGAGCTATAATCTAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTCCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTGATGAATCCAACACGAGACTGATGAGGGAATATGTCACAGAGACAAGTCCATCGGATACTGAGAAGTGA

Protein sequence

MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

Homology

[Close]

BLAST of Spg012099.1 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.2 bits (835), Expect = 1.9e-85
Identity = 175/202 (86.63%), Postives = 181/202 (89.60%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MES ARILSPT FPSLFP PN NRSN +PVWPKK  ASKS+RLHC+KMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQ-FLCFNCSVMLCGFSLVFILVLVEQSYNLEAYT 120
           KAAKNLHNFFTYVAVRIVTAQLEVALQ  LCFNCS ML    LV ILVLVEQSYN EA+ 
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAML----LVLILVLVEQSYNPEAHA 120

Query: 121 ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 180
           ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV
Sbjct: 121 ELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMV 180

Query: 181 DESNTRLMREYVTETSPSDTEK 202
            ESNTRLMREYVTETSP D EK
Sbjct: 181 GESNTRLMREYVTETSP-DAEK 197

[Close]

BLAST of Spg012099.1 vs. NCBI nr
Match: XP_038881664.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-79
Identity = 161/201 (80.10%), Postives = 166/201 (82.59%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           ME SARILS TQFPSLFPLPN NRSN+ PVWPKKPKA+KSMRLHC+KMYVPGFGEASPE+
Sbjct: 1   MEPSARILSSTQFPSLFPLPNLNRSNVFPVWPKKPKATKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYN EAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYQE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 173

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTRLMREYVTETSPSDTEK
Sbjct: 181 ESNTRLMREYVTETSPSDTEK 173

[Close]

BLAST of Spg012099.1 vs. NCBI nr
Match: XP_023003335.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-76
Identity = 157/201 (78.11%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MES ARILSPT FPSLFPLPN NRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAAKNLHNFFTYVAVRIVTAQLE                            SYN EA+TE
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAHTE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVG 172

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTRLMREYVTETSP D EK
Sbjct: 181 ESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of Spg012099.1 vs. NCBI nr
Match: XP_008440039.1 (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chaperonin-like RBCX protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 4.7e-76
Identity = 156/201 (77.61%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYN EAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVG 173

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Spg012099.1 vs. NCBI nr
Match: XP_004134778.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 9.0e-75
Identity = 154/201 (76.62%), Postives = 162/201 (80.60%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MESSARILSPTQFPSLF LPN NR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYN EAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVS 173

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Spg012099.1 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.9e-50
Identity = 114/192 (59.38%), Postives = 131/192 (68.23%), Query Frame = 0


Query: 19  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHN 78
           L +S  S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+
Sbjct: 8   LHHSYLSYLNPKFGKRPLVSYPLMQSSRKCKQTRICSNKMYVPGFGEASPEAKAAKHLHD 67

Query: 79  FFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTELMEFLDRH 138
           FFTYVAVRIV+AQLE                            SYN EAY EL EFLD +
Sbjct: 68  FFTYVAVRIVSAQLE----------------------------SYNPEAYMELREFLDTN 127

Query: 139 SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMR 198
           S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK VD+SNTRLMR
Sbjct: 128 SVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSNTRLMR 171

Query: 199 EYVTETSPSDTE 201
           EYV ETS  +T+
Sbjct: 188 EYVLETSHVETD 171

[Close]

BLAST of Spg012099.1 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 157/201 (78.11%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MES ARILSPT FPSLFPLPN NRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAAKNLHNFFTYVAVRIVTAQLE                            SYN EA+TE
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAHTE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVG 172

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTRLMREYVTETSP D EK
Sbjct: 181 ESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of Spg012099.1 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76
Identity = 156/201 (77.61%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYN EAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVG 173

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Spg012099.1 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76
Identity = 156/201 (77.61%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYN EAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVG 173

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Spg012099.1 vs. ExPASy TrEMBL
Match: A0A0A0KMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.3e-75
Identity = 154/201 (76.62%), Postives = 162/201 (80.60%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MESSARILSPTQFPSLF LPN NR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYN EAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVS 173

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Spg012099.1 vs. ExPASy TrEMBL
Match: A0A6J1EFL9 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433874 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.2e-74
Identity = 154/201 (76.62%), Postives = 161/201 (80.10%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEA 60
           MES ARILSPT FPSLFP PN NRSN +PVWPKK +ASKS+RLHC+KMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTE 120
           KAAKNLHNFFTYVAVRIVTAQLE                            SYN EA+ E
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAHAE 120

Query: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVD 180
           LMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVG 172

Query: 181 ESNTRLMREYVTETSPSDTEK 202
           ESNTRLMREYVTETSP D EK
Sbjct: 181 ESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of Spg012099.1 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-51
Identity = 114/192 (59.38%), Postives = 131/192 (68.23%), Query Frame = 0


Query: 19  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHN 78
           L +S  S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+
Sbjct: 8   LHHSYLSYLNPKFGKRPLVSYPLMQSSRKCKQTRICSNKMYVPGFGEASPEAKAAKHLHD 67

Query: 79  FFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVEQSYNLEAYTELMEFLDRH 138
           FFTYVAVRIV+AQLE                            SYN EAY EL EFLD +
Sbjct: 68  FFTYVAVRIVSAQLE----------------------------SYNPEAYMELREFLDTN 127

Query: 139 SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMR 198
           S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK VD+SNTRLMR
Sbjct: 128 SVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSNTRLMR 171

Query: 199 EYVTETSPSDTE 201
           EYV ETS  +T+
Sbjct: 188 EYVLETSHVETD 171

The following BLAST results are available for this feature:

BLAST of Spg012099.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026647.1	1.9e-85	86.63	Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
XP_038881664.1	2.1e-79	80.10	chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_023003335.1	2.8e-76	78.11	chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_008440039.1	4.7e-76	77.61	PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chape...	[more]
XP_004134778.1	9.0e-75	76.62	chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]	[more]

BLAST of Spg012099.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU9	7.9e-50	59.38	Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Spg012099.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRH1	1.3e-76	78.11	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3CNU4	2.3e-76	77.61	Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B054	2.3e-76	77.61	uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=...	[more]
A0A0A0KMZ4	4.3e-75	76.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1	[more]
A0A6J1EFL9	2.2e-74	76.62	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Spg012099.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04330.1	5.6e-51	59.38	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 48..201 e-value: 3.6E-52 score: 177.8
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 53..199
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 61..83 e-value: 1.3E-4 score: 22.2 coord: 111..194 e-value: 8.2E-20 score: 71.1
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..200
None	No IPR available	PANTHER	PTHR33791:SF12	CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC	coord: 1..200

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg012099	Spg012099	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg012099.1-five_prime_utr	Spg012099.1-five_prime_utr-scaffold1:4070486..4070804	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg012099.1-cds	Spg012099.1-cds-scaffold1:4070805..4070958	CDS
Spg012099.1-cds	Spg012099.1-cds-scaffold1:4071039..4071335	CDS
Spg012099.1-cds	Spg012099.1-cds-scaffold1:4071664..4071680	CDS
Spg012099.1-cds	Spg012099.1-cds-scaffold1:4071759..4071821	CDS
Spg012099.1-cds	Spg012099.1-cds-scaffold1:4071912..4071986	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg012099.1-three_prime_utr	Spg012099.1-three_prime_utr-scaffold1:4071987..4072392	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg012099.1	Spg012099.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
biological_process	GO:0015977	carbon fixation
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0033314	mitotic DNA replication checkpoint signaling
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003688	DNA replication origin binding