Spg003417.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg003417.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSuperoxide dismutase [Cu-Zn]
Locationscaffold4: 45646952 .. 45651090 (+)
Sequence length498
RNA-Seq ExpressionSpg003417.1
SyntenySpg003417.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAAGAATGTCTCGGTCGGTGGCGTTCAATTCCCGAGTCTGTCTAGTGTCTACACGCGGTGGATTCGCAACGAAGATTCAGAAATGACGATTTCATCCTTCGTTTCTTATGTTGGGTGGCGATTCCTCCAGCCTCCATGCATACAAATCCCGCGCGAATTCGGTGTTCTCTTTCGGCTACACTGAAAGTGATTTCATCCGTAATTTCATTGTTTCTGTTAGTTCTAGTTCTTGTCTGCTCAAACGCAATTTTGGACATCTTTTGCGCACTGAAGATTAAAGATATCGTAAGTTGTACTTCACTACTTTCCAGTTTTCAATTTCCTTAGTAGTTACTAGTTAAAGCTGGTTTCTATGGTTTGATATCATTTTCATTGCTTGTTATTTATTGTTGAATAGAAAGAAAGAAAAATCATGTTGATTCCTGAAATAAAAACAGCTCACTGATAGCTATCGGTCGGTTTTGTTTGATTTTTTTATTTTTAGATTTTTTGATTTTTGATTTTTTATTTTTTTGGTAAGAAACTTTTCAGAGTGCATAAACGTGTGTGGTCGAAAATTTATAGATAAAAACAGCTCACTACTTAGAAAGTGCATAAACTGTTTACCAAAAGATGAGTTTTAAAGTTGAATAAAAAATTTAAAAAAGTTATAGATAGTTAAATAATGGGAGTTGAATAAGAAGCTAACATGAAATTAATCTTTTACCCTTTTACTTGATTTAAATTATTTTTAACATCTTCCCAAACCCCTCCTGATCTCTTCTTGATTTGTATATGTTGAACTGATGAGCTCCTCACTGATGTAACAGTGATAATTCAGTTAGAACTGATTTAAGATGTTGAAGATTAGCATTGATCTTCTCACTCAAATTTGGTCACCAGGAATTCTTGTTTGTCTTTCAGATAGTTCCATTTTGCTTTTCTGAATTCCAATTGCTCATTAACTATTATTATGATGAATATATTTGAAAATGAAATTTTCCTTGGTTTATTTTATTGACTAATACCCAATTTTCCCAGTTACTACAGCTCTACTGATAACCTTCATAGTGTTTGTGTTCAGTTAACACAAAACAATGGTGAAAGCTGTAGCTGTTCTGGAGAGCAATCAGGGAGTCAGTGGAACCGTCTTCTTTAGCCAAAATGGCAATGGTAGCTCAAATCAGATTTCAAAATTTAAATGCTTACAATTTTTTTTTTTTTTTTTGGTAGCTCTTAATTTTGCCTGTATATTTTCCAGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTAAGGCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTCATCAACTGGTACATTCTCACGAGTAAAATACCTTCTTAGTTCCTCAACATTAGATAGAGTGTCCATTGGAACTATTGGGACATTATAATTTATAACTCCATTTGCAAACAAATCGGTTTCAGGGCCTCATTTCAACCCTGAAGGGAAAGATCATGGTGCCCCTGATGATGAGAATCGCCATGTTGGCGATCTTGGAAATTTGATCGCCGGCGATGATGGTATATTTAATGTAGTTCCATGTTTTTTTCTCTCTCTCCCCGATATGAACCGAAACAGAACCACAATGTATTACAATATACAAGATAAAGAAACTCCACCATAAACCAAGTATTCGAGGTACTTGGATCCTTCCTCTCTTGAGATCACTCACGCCCTAAGCTCACTGAGTCAATCCCTAATCTTCCCCTTCCCCACTCCCTCTATTTATAAACCAATACTCTAACAAACTCCCTAACTAATTGTTAGTATACCCTTACTAATATTCCTAGTTTCACCTTACTTACATTCCTATCACTCTCCCTAAAGGAAAATTGAGAAAACGAACCCCAAATGATCGTCCCCTCCGAAAACGCATGACACTGGATTCCTTCTAGGAATCTAACTTCCTCCCACCCCTCCTATTAATGACAATTTCACAATGAAGATCCCTGAATTTCATGTTGAAGCACCGTTTTTTTTTCCTTTTTGATGATTAGTTTGACATGATTGTAAATGTTGTTGCATCTACTGCACAGGCACTGCCACTTTCTCTATTATTGACAAGCAGGTTTGGAAAATTTCATGTTTATTTGGATGTTTCACCATCTCTACTGGAAGTTTCAACTACTGAGCATTACGTTCTTCTATGCTATGCAGATTTCCCTCGTTGGACCAAATTCCCTTCTTGGAAGGTCTATTGTTGTCCATGCGGATCCTGATGATCTTGGCAGGGGTAATATTATAAGTCTTCATTGCTATATTTTTAATAAGAATCTTATATATTCTTTTAACCTAAGAAGCACGGATACAAACGCAAGACACGGACACGGTGACACATCATTTTTTTAAAATCTAGGACACGGACACATTTAGTAAAATATGCATTTTAAAAATATATATCATTTTTATAAAAGAAGGAAATTCAAAAACATTAAGTTTAAAAATGAGTTTGATGTATTTCACTCTTAAAATTTATTATTTTTGTCATTGAGCATGCTTAACAAGTGATCGGTATGGACATATATTGACTCTGTACAACTAGTGTTTGTCACATATCAATTGTGCTAAAAAATGTCTGATACGTGTCTAACAAGTGTCAGAGTGTCCAAGTATTCAACACGTGTCGGATACGGACATGCCAACCAAACTAAAGTGTCCGTGCTTCATAGGTTTTAACTCTATCACAACTGGTCTGTCATTCAAAGATTGTCACAATTGTCCTAAATAAGTTCACTGACACATACATGGTAAAAGCCTGCAATATCTCATTCATTGTAACCAAGTTTCACCTTGGTATTATTTTGATCTTCTTTGAATTCATAGATATCCTTTTGGGGTTCGTCTCATTTCTCAATTTGTATGTGCAGAACATCCATTTTTCTTCACATTTGTACCACTGATTTAACCCAAATCTTAAACCATGAGATTATTTAATATGCTGGAAGTATCAATCTTTGAAATATTTGTTTCCCTTTCAATTAATTATAAGTCTTCCTTTTGTCTCTGCACGTCAAGTAGGTGACTTCCATCAGTATAACCAAATAAAGAAATTTCAAGCATAATCCGTGAACTGTTTCGATCTTGTCTGCAGGTCGAACCGAACTTAGCCTGACCACTGGTAATTCGGGTGACAGAATAGCTTGTGGTAAGTTATGTTAGAATCATACTAATTCTTTCCATTGCTTCTTTCTGATTACGCAATGCTATCTCTGCAATTCAAAAACGAAGGCATAGGATATAACCAGCAAAAAAGAGCTTCTCATGTTTACGTGTTCAAACCTGCCATTATCTTTATCATTAGGTGTGTTCGAACCCGCAATTATCTTTATCATTAGGTGGATGTCCTTATAATTAGTTAAATTAAGAAGTATCACTGACAAACATATGGGTGCAAATAATAGCTCTTACCCAGCTAACCTAAGAATAGCTTAATTGGTTAACACATATACCCTCGACCGAGAAGTTAGGGATTCGAACATCCACCCCACATATTGTTGAACTAAAAATAGCACTCCGCATGTTGTTACTAAATTTTACGTAAACATTTATATGTTTCTTGTGTGACTTTGGTCTATCCATCACTTGGCAACATACTGCATTTTTTTAAAGATTTAGCACCTTTTTAGGTGGCGCATTGATTGTTTTGTGGGACAAATCTGTTCTCTAATTCAGGAGCTAAATTTTTTCCCTGAAGTAAAAATCTATTATTATGTGTTTCTTACAGGCGTTATTGGGCTGCAAGAGTGAAGTACAATTCGACCACCATGGTTGATGATGACTGATGAAGAAGTACAGTGCATGCAAGCTATATTTTGGTTTCGAACATATATAGTTGTAAATGAAATAAGATGGCTTTAAACTTGTACTCGGTTTTGTATATGTATCTGGACATCTGGTTTGGTTTTGTATATTAATTTTTTTTTTTTTTTTTTTTTTTAAAAAAGTGTGCAAAGTCATGGTGTAAAATCAGGTCTTGAGAAGTTGCAAGTCTTGATAAAATTAGAATTAAGTATGGTAAATTTTATATTTTCAATATTTTATCAACAGCCCACTTCAAGTCGATAGATTTTCCGCATTATTTCATTGGACTCAACAGTCTTATCG

mRNA sequence

ATGGTGAAAGCTGTAGCTGTTCTGGAGAGCAATCAGGGAGTCAGTGGAACCGTCTTCTTTAGCCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTAAGGCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTCATCAACTGGGCCTCATTTCAACCCTGAAGGGAAAGATCATGGTGCCCCTGATGATGAGAATCGCCATGTTGGCGATCTTGGAAATTTGATCGCCGGCGATGATGGCACTGCCACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCCTTCTTGGAAGGTCTATTGTTGTCCATGCGGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGTAATTCGGGTGACAGAATAGCTTGTGGTAAGCGTTATTGGGCTGCAAGAGTGAAGTACAATTCGACCACCATGGTTGATGATGACTGA

Coding sequence (CDS)

ATGGTGAAAGCTGTAGCTGTTCTGGAGAGCAATCAGGGAGTCAGTGGAACCGTCTTCTTTAGCCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTAAGGCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTCATCAACTGGGCCTCATTTCAACCCTGAAGGGAAAGATCATGGTGCCCCTGATGATGAGAATCGCCATGTTGGCGATCTTGGAAATTTGATCGCCGGCGATGATGGCACTGCCACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCCTTCTTGGAAGGTCTATTGTTGTCCATGCGGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGTAATTCGGGTGACAGAATAGCTTGTGGTAAGCGTTATTGGGCTGCAAGAGTGAAGTACAATTCGACCACCATGGTTGATGATGACTGA

Protein sequence

MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHADPDDLGRGRTELSLTTGNSGDRIACGKRYWAARVKYNSTTMVDDD
Homology
BLAST of Spg003417.1 vs. NCBI nr
Match: TYK18385.1 (superoxide dismutase [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 148/187 (79.14%), Postives = 156/187 (83.42%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+ GNISGLKAGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN++AGD+GTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACGK----------------------RYWAARVKYNS 166
           DPDDLGRG TELSLTTGN+G+RI CGK                      RYW ARVKY S
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGKYIIILIRHIHIASKDYAMLAKQRYWTARVKYTS 180

BLAST of Spg003417.1 vs. NCBI nr
Match: KAG7030279.1 (Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 5.3e-73
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

BLAST of Spg003417.1 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 9.0e-73
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

BLAST of Spg003417.1 vs. NCBI nr
Match: XP_022946180.1 (superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

BLAST of Spg003417.1 vs. NCBI nr
Match: XP_022999146.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIAC 146
           DPDDLGRG+TELSLTTGN+G+RIAC
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIAC 145

BLAST of Spg003417.1 vs. ExPASy Swiss-Prot
Match: P93258 (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.7e-61
Identity = 110/146 (75.34%), Postives = 126/146 (86.30%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAV VL S++GVSGTV F+Q G+GPTTV GN+SGL+ GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG  ELS  TGN+G R+ACG
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACG 146

BLAST of Spg003417.1 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 4.8e-61
Identity = 108/146 (73.97%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVSGT+FFSQ G+GPTTV GN+SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NS++GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELS +TGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACG 146

BLAST of Spg003417.1 vs. ExPASy Swiss-Prot
Match: O49073 (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii OX=70770 GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 107/146 (73.29%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVK VAVL S++GVSGT++F+Q G+GPTTV GN+SGLK G HGFHVHALGDTTNGC STG
Sbjct: 1   MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP GK+HGAPDDE RH GDLGN+  G+DGTA F+I+DKQI L GP+S++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELS TTGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSKTTGNTGGRVACG 146

BLAST of Spg003417.1 vs. ExPASy Swiss-Prot
Match: P22233 (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 108/146 (73.97%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           M KAV VL S++GVSGTV+F+Q G+GPTTV GN+SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PH+NP GK+HGAP+D+ RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           +PDDLGRG  ELS TTGN+G R+ACG
Sbjct: 121 EPDDLGRGGHELSKTTGNAGGRVACG 146

BLAST of Spg003417.1 vs. ExPASy Swiss-Prot
Match: P27082 (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-60
Identity = 106/146 (72.60%), Postives = 128/146 (87.67%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVSGT+FF+Q+G+ PTTV GN+SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PH+NP GK+HGAP+DE RH GDLGN+  G+DGTA+F++ DKQI L GP S++GR++VVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELS TTGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACG 146

BLAST of Spg003417.1 vs. ExPASy TrEMBL
Match: A0A5D3D4B3 (Superoxide dismutase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001080 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 148/187 (79.14%), Postives = 156/187 (83.42%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+ GNISGLKAGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN++AGD+GTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACGK----------------------RYWAARVKYNS 166
           DPDDLGRG TELSLTTGN+G+RI CGK                      RYW ARVKY S
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGKYIIILIRHIHIASKDYAMLAKQRYWTARVKYTS 180

BLAST of Spg003417.1 vs. ExPASy TrEMBL
Match: A0A6J1KIS8 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.3e-73
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

BLAST of Spg003417.1 vs. ExPASy TrEMBL
Match: A0A6J1KC95 (Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIAC 146
           DPDDLGRG+TELSLTTGN+G+RIAC
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIAC 145

BLAST of Spg003417.1 vs. ExPASy TrEMBL
Match: A0A6J1G334 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

BLAST of Spg003417.1 vs. ExPASy TrEMBL
Match: A0A6J1G326 (Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 135/145 (93.10%), Postives = 141/145 (97.24%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIAC 146
           DPDDLGRG+TELSLTTGN+G+RIAC
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIAC 145

BLAST of Spg003417.1 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-61
Identity = 106/146 (72.60%), Postives = 124/146 (84.93%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV+GT+FF+Q G+G TTV G +SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELSL TGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACG 146

BLAST of Spg003417.1 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-61
Identity = 106/146 (72.60%), Postives = 124/146 (84.93%), Query Frame = 0

Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV+GT+FF+Q G+G TTV G +SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELSL TGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACG 146

BLAST of Spg003417.1 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45
Identity = 88/144 (61.11%), Postives = 104/144 (72.22%), Query Frame = 0

Query: 3   KAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGPH 62
           KAVAVL+    V G V  +Q+ +GPTTV   I+GL  G HGFH+H  GDTTNGC STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHADP 122
           FNP    HGAP+DE RH GDLGN+ A  DG A  +I+D QI L GPNS++GR+ VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGRGRTELSLTTGNSGDRIACG 147
           DDLG+G  ELSLTTGN+G R+ACG
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACG 209

BLAST of Spg003417.1 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = 0

Query: 2   VKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V G + F Q+ +G T V G ISGL  G HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGRTELSLTTGNSGDRIACG 147
           PDDLG+G  +LS +TGN+G R+ CG
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCG 152

BLAST of Spg003417.1 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 0

Query: 2   VKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V G + F Q+ +G T V G ISGL  G HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRG 129
           PDDLG+G
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK18385.13.0e-7679.14superoxide dismutase [Cucumis melo var. makuwa][more]
KAG7030279.15.3e-7393.84Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022999148.19.0e-7393.84superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima][more]
XP_022946180.14.5e-7293.15superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata][more]
XP_022999146.14.5e-7293.79superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.... [more]
Match NameE-valueIdentityDescription
P932581.7e-6175.34Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC... [more]
Q077964.8e-6173.97Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2[more]
O490731.1e-6073.29Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii OX=70770 GN=SODCC PE=2 SV=1[more]
P222331.1e-6073.97Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1[more]
P270821.8e-6072.60Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ... [more]
Match NameE-valueIdentityDescription
A0A5D3D4B31.4e-7679.14Superoxide dismutase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456... [more]
A0A6J1KIS84.3e-7393.84Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV... [more]
A0A6J1KC952.2e-7293.79Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1[more]
A0A6J1G3342.2e-7293.15Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 ... [more]
A0A6J1G3261.1e-7193.10Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G08830.18.4e-6172.60copper/zinc superoxide dismutase 1 [more]
AT1G08830.28.4e-6172.60copper/zinc superoxide dismutase 1 [more]
AT2G28190.11.0e-4561.11copper/zinc superoxide dismutase 2 [more]
AT5G18100.12.7e-4355.86copper/zinc superoxide dismutase 3 [more]
AT5G18100.22.9e-3756.69copper/zinc superoxide dismutase 3 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 79..88
score: 70.0
coord: 43..65
score: 78.93
coord: 98..120
score: 56.16
coord: 123..149
score: 56.82
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 11..146
e-value: 5.3E-48
score: 162.7
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 2..145
e-value: 7.37319E-61
score: 183.231
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 1..155
e-value: 8.2E-64
score: 216.4
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 2..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76
NoneNo IPR availablePANTHERPTHR10003:SF84SUPEROXIDE DISMUTASE [CU-ZN]coord: 1..146
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 1..146
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 43..53

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg003417Spg003417gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg003417.1-five_prime_utrSpg003417.1-five_prime_utr-scaffold4:45646952..45647239five_prime_UTR
Spg003417.1-five_prime_utrSpg003417.1-five_prime_utr-scaffold4:45647975..45648030five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45648031..45648106CDS
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45648195..45648296CDS
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45648411..45648506CDS
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45649023..45649054CDS
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45649144..45649219CDS
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45650078..45650135CDS
Spg003417.1-cdsSpg003417.1-cds-scaffold4:45650711..45650768CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg003417.1-three_prime_utrSpg003417.1-three_prime_utr-scaffold4:45650769..45651090three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg003417.1Spg003417.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006801 superoxide metabolic process
biological_process GO:0019430 removal of superoxide radicals
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004784 superoxide dismutase activity