Spg003417 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003417
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Superoxide dismutase [Cu-Zn]
Location	scaffold4: 45646952 .. 45651090 (+)
RNA-Seq Expression	Spg003417
Synteny	Spg003417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAAGAATGTCTCGGTCGGTGGCGTTCAATTCCCGAGTCTGTCTAGTGTCTACACGCGGTGGATTCGCAACGAAGATTCAGAAATGACGATTTCATCCTTCGTTTCTTATGTTGGGTGGCGATTCCTCCAGCCTCCATGCATACAAATCCCGCGCGAATTCGGTGTTCTCTTTCGGCTACACTGAAAGTGATTTCATCCGTAATTTCATTGTTTCTGTTAGTTCTAGTTCTTGTCTGCTCAAACGCAATTTTGGACATCTTTTGCGCACTGAAGATTAAAGATATCGTAAGTTGTACTTCACTACTTTCCAGTTTTCAATTTCCTTAGTAGTTACTAGTTAAAGCTGGTTTCTATGGTTTGATATCATTTTCATTGCTTGTTATTTATTGTTGAATAGAAAGAAAGAAAAATCATGTTGATTCCTGAAATAAAAACAGCTCACTGATAGCTATCGGTCGGTTTTGTTTGATTTTTTTATTTTTAGATTTTTTGATTTTTGATTTTTTATTTTTTTGGTAAGAAACTTTTCAGAGTGCATAAACGTGTGTGGTCGAAAATTTATAGATAAAAACAGCTCACTACTTAGAAAGTGCATAAACTGTTTACCAAAAGATGAGTTTTAAAGTTGAATAAAAAATTTAAAAAAGTTATAGATAGTTAAATAATGGGAGTTGAATAAGAAGCTAACATGAAATTAATCTTTTACCCTTTTACTTGATTTAAATTATTTTTAACATCTTCCCAAACCCCTCCTGATCTCTTCTTGATTTGTATATGTTGAACTGATGAGCTCCTCACTGATGTAACAGTGATAATTCAGTTAGAACTGATTTAAGATGTTGAAGATTAGCATTGATCTTCTCACTCAAATTTGGTCACCAGGAATTCTTGTTTGTCTTTCAGATAGTTCCATTTTGCTTTTCTGAATTCCAATTGCTCATTAACTATTATTATGATGAATATATTTGAAAATGAAATTTTCCTTGGTTTATTTTATTGACTAATACCCAATTTTCCCAGTTACTACAGCTCTACTGATAACCTTCATAGTGTTTGTGTTCAGTTAACACAAAACAATGGTGAAAGCTGTAGCTGTTCTGGAGAGCAATCAGGGAGTCAGTGGAACCGTCTTCTTTAGCCAAAATGGCAATGGTAGCTCAAATCAGATTTCAAAATTTAAATGCTTACAATTTTTTTTTTTTTTTTTGGTAGCTCTTAATTTTGCCTGTATATTTTCCAGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTAAGGCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTCATCAACTGGTACATTCTCACGAGTAAAATACCTTCTTAGTTCCTCAACATTAGATAGAGTGTCCATTGGAACTATTGGGACATTATAATTTATAACTCCATTTGCAAACAAATCGGTTTCAGGGCCTCATTTCAACCCTGAAGGGAAAGATCATGGTGCCCCTGATGATGAGAATCGCCATGTTGGCGATCTTGGAAATTTGATCGCCGGCGATGATGGTATATTTAATGTAGTTCCATGTTTTTTTCTCTCTCTCCCCGATATGAACCGAAACAGAACCACAATGTATTACAATATACAAGATAAAGAAACTCCACCATAAACCAAGTATTCGAGGTACTTGGATCCTTCCTCTCTTGAGATCACTCACGCCCTAAGCTCACTGAGTCAATCCCTAATCTTCCCCTTCCCCACTCCCTCTATTTATAAACCAATACTCTAACAAACTCCCTAACTAATTGTTAGTATACCCTTACTAATATTCCTAGTTTCACCTTACTTACATTCCTATCACTCTCCCTAAAGGAAAATTGAGAAAACGAACCCCAAATGATCGTCCCCTCCGAAAACGCATGACACTGGATTCCTTCTAGGAATCTAACTTCCTCCCACCCCTCCTATTAATGACAATTTCACAATGAAGATCCCTGAATTTCATGTTGAAGCACCGTTTTTTTTTCCTTTTTGATGATTAGTTTGACATGATTGTAAATGTTGTTGCATCTACTGCACAGGCACTGCCACTTTCTCTATTATTGACAAGCAGGTTTGGAAAATTTCATGTTTATTTGGATGTTTCACCATCTCTACTGGAAGTTTCAACTACTGAGCATTACGTTCTTCTATGCTATGCAGATTTCCCTCGTTGGACCAAATTCCCTTCTTGGAAGGTCTATTGTTGTCCATGCGGATCCTGATGATCTTGGCAGGGGTAATATTATAAGTCTTCATTGCTATATTTTTAATAAGAATCTTATATATTCTTTTAACCTAAGAAGCACGGATACAAACGCAAGACACGGACACGGTGACACATCATTTTTTTAAAATCTAGGACACGGACACATTTAGTAAAATATGCATTTTAAAAATATATATCATTTTTATAAAAGAAGGAAATTCAAAAACATTAAGTTTAAAAATGAGTTTGATGTATTTCACTCTTAAAATTTATTATTTTTGTCATTGAGCATGCTTAACAAGTGATCGGTATGGACATATATTGACTCTGTACAACTAGTGTTTGTCACATATCAATTGTGCTAAAAAATGTCTGATACGTGTCTAACAAGTGTCAGAGTGTCCAAGTATTCAACACGTGTCGGATACGGACATGCCAACCAAACTAAAGTGTCCGTGCTTCATAGGTTTTAACTCTATCACAACTGGTCTGTCATTCAAAGATTGTCACAATTGTCCTAAATAAGTTCACTGACACATACATGGTAAAAGCCTGCAATATCTCATTCATTGTAACCAAGTTTCACCTTGGTATTATTTTGATCTTCTTTGAATTCATAGATATCCTTTTGGGGTTCGTCTCATTTCTCAATTTGTATGTGCAGAACATCCATTTTTCTTCACATTTGTACCACTGATTTAACCCAAATCTTAAACCATGAGATTATTTAATATGCTGGAAGTATCAATCTTTGAAATATTTGTTTCCCTTTCAATTAATTATAAGTCTTCCTTTTGTCTCTGCACGTCAAGTAGGTGACTTCCATCAGTATAACCAAATAAAGAAATTTCAAGCATAATCCGTGAACTGTTTCGATCTTGTCTGCAGGTCGAACCGAACTTAGCCTGACCACTGGTAATTCGGGTGACAGAATAGCTTGTGGTAAGTTATGTTAGAATCATACTAATTCTTTCCATTGCTTCTTTCTGATTACGCAATGCTATCTCTGCAATTCAAAAACGAAGGCATAGGATATAACCAGCAAAAAAGAGCTTCTCATGTTTACGTGTTCAAACCTGCCATTATCTTTATCATTAGGTGTGTTCGAACCCGCAATTATCTTTATCATTAGGTGGATGTCCTTATAATTAGTTAAATTAAGAAGTATCACTGACAAACATATGGGTGCAAATAATAGCTCTTACCCAGCTAACCTAAGAATAGCTTAATTGGTTAACACATATACCCTCGACCGAGAAGTTAGGGATTCGAACATCCACCCCACATATTGTTGAACTAAAAATAGCACTCCGCATGTTGTTACTAAATTTTACGTAAACATTTATATGTTTCTTGTGTGACTTTGGTCTATCCATCACTTGGCAACATACTGCATTTTTTTAAAGATTTAGCACCTTTTTAGGTGGCGCATTGATTGTTTTGTGGGACAAATCTGTTCTCTAATTCAGGAGCTAAATTTTTTCCCTGAAGTAAAAATCTATTATTATGTGTTTCTTACAGGCGTTATTGGGCTGCAAGAGTGAAGTACAATTCGACCACCATGGTTGATGATGACTGATGAAGAAGTACAGTGCATGCAAGCTATATTTTGGTTTCGAACATATATAGTTGTAAATGAAATAAGATGGCTTTAAACTTGTACTCGGTTTTGTATATGTATCTGGACATCTGGTTTGGTTTTGTATATTAATTTTTTTTTTTTTTTTTTTTTTTAAAAAAGTGTGCAAAGTCATGGTGTAAAATCAGGTCTTGAGAAGTTGCAAGTCTTGATAAAATTAGAATTAAGTATGGTAAATTTTATATTTTCAATATTTTATCAACAGCCCACTTCAAGTCGATAGATTTTCCGCATTATTTCATTGGACTCAACAGTCTTATCG

mRNA sequence

ATGGTGAAAGCTGTAGCTGTTCTGGAGAGCAATCAGGGAGTCAGTGGAACCGTCTTCTTTAGCCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTAAGGCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTCATCAACTGGGCCTCATTTCAACCCTGAAGGGAAAGATCATGGTGCCCCTGATGATGAGAATCGCCATGTTGGCGATCTTGGAAATTTGATCGCCGGCGATGATGGCACTGCCACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCCTTCTTGGAAGGTCTATTGTTGTCCATGCGGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGTAATTCGGGTGACAGAATAGCTTGTGGTAAGCGTTATTGGGCTGCAAGAGTGAAGTACAATTCGACCACCATGGTTGATGATGACTGA

Coding sequence (CDS)

ATGGTGAAAGCTGTAGCTGTTCTGGAGAGCAATCAGGGAGTCAGTGGAACCGTCTTCTTTAGCCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTAAGGCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACAACCAATGGTTGCTCATCAACTGGGCCTCATTTCAACCCTGAAGGGAAAGATCATGGTGCCCCTGATGATGAGAATCGCCATGTTGGCGATCTTGGAAATTTGATCGCCGGCGATGATGGCACTGCCACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCCTTCTTGGAAGGTCTATTGTTGTCCATGCGGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGTAATTCGGGTGACAGAATAGCTTGTGGTAAGCGTTATTGGGCTGCAAGAGTGAAGTACAATTCGACCACCATGGTTGATGATGACTGA

Protein sequence

MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHADPDDLGRGRTELSLTTGNSGDRIACGKRYWAARVKYNSTTMVDDD

Homology

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BLAST of Spg003417 vs. NCBI nr
Match: TYK18385.1 (superoxide dismutase [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 148/187 (79.14%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+ GNISGLKAGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN++AGD+GTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACGK----------------------RYWAARVKYNS 166
           DPDDLGRG TELSLTTGN+G+RI CGK                      RYW ARVKY S
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGKYIIILIRHIHIASKDYAMLAKQRYWTARVKYTS 180

[Close]

BLAST of Spg003417 vs. NCBI nr
Match: KAG7030279.1 (Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 5.3e-73
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

[Close]

BLAST of Spg003417 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 9.0e-73
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

[Close]

BLAST of Spg003417 vs. NCBI nr
Match: XP_022946180.1 (superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

[Close]

BLAST of Spg003417 vs. NCBI nr
Match: XP_022999146.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIAC 146
           DPDDLGRG+TELSLTTGN+G+RIAC
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIAC 145

[Close]

BLAST of Spg003417 vs. ExPASy Swiss-Prot
Match: P93258 (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.7e-61
Identity = 110/146 (75.34%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAV VL S++GVSGTV F+Q G+GPTTV GN+SGL+ GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG  ELS  TGN+G R+ACG
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACG 146

[Close]

BLAST of Spg003417 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 4.8e-61
Identity = 108/146 (73.97%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVSGT+FFSQ G+GPTTV GN+SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NS++GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELS +TGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACG 146

[Close]

BLAST of Spg003417 vs. ExPASy Swiss-Prot
Match: O49073 (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii OX=70770 GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 107/146 (73.29%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVK VAVL S++GVSGT++F+Q G+GPTTV GN+SGLK G HGFHVHALGDTTNGC STG
Sbjct: 1   MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP GK+HGAPDDE RH GDLGN+  G+DGTA F+I+DKQI L GP+S++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELS TTGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSKTTGNTGGRVACG 146

[Close]

BLAST of Spg003417 vs. ExPASy Swiss-Prot
Match: P22233 (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 108/146 (73.97%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           M KAV VL S++GVSGTV+F+Q G+GPTTV GN+SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PH+NP GK+HGAP+D+ RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           +PDDLGRG  ELS TTGN+G R+ACG
Sbjct: 121 EPDDLGRGGHELSKTTGNAGGRVACG 146

[Close]

BLAST of Spg003417 vs. ExPASy Swiss-Prot
Match: P27082 (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-60
Identity = 106/146 (72.60%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVSGT+FF+Q+G+ PTTV GN+SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PH+NP GK+HGAP+DE RH GDLGN+  G+DGTA+F++ DKQI L GP S++GR++VVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELS TTGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACG 146

[Close]

BLAST of Spg003417 vs. ExPASy TrEMBL
Match: A0A5D3D4B3 (Superoxide dismutase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001080 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 148/187 (79.14%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+ GNISGLKAGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN++AGD+GTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACGK----------------------RYWAARVKYNS 166
           DPDDLGRG TELSLTTGN+G+RI CGK                      RYW ARVKY S
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGKYIIILIRHIHIASKDYAMLAKQRYWTARVKYTS 180

[Close]

BLAST of Spg003417 vs. ExPASy TrEMBL
Match: A0A6J1KIS8 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.3e-73
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

[Close]

BLAST of Spg003417 vs. ExPASy TrEMBL
Match: A0A6J1KC95 (Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVGPNS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIAC 146
           DPDDLGRG+TELSLTTGN+G+RIAC
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIAC 145

[Close]

BLAST of Spg003417 vs. ExPASy TrEMBL
Match: A0A6J1G334 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLGRG+TELSLTTGN+G+RIACG
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACG 146

[Close]

BLAST of Spg003417 vs. ExPASy TrEMBL
Match: A0A6J1G326 (Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 135/145 (93.10%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTVRGNISGL  GLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNL+AGDDGTATFSIIDKQISLVG NS+LGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIAC 146
           DPDDLGRG+TELSLTTGN+G+RIAC
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIAC 145

[Close]

BLAST of Spg003417 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-61
Identity = 106/146 (72.60%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV+GT+FF+Q G+G TTV G +SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELSL TGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACG 146

[Close]

BLAST of Spg003417 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-61
Identity = 106/146 (72.60%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV+GT+FF+Q G+G TTV G +SGLK GLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNSGDRIACG 147
           DPDDLG+G  ELSL TGN+G R+ACG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACG 146

[Close]

BLAST of Spg003417 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45
Identity = 88/144 (61.11%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 3   KAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGPH 62
           KAVAVL+    V G V  +Q+ +GPTTV   I+GL  G HGFH+H  GDTTNGC STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHADP 122
           FNP    HGAP+DE RH GDLGN+ A  DG A  +I+D QI L GPNS++GR+ VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGRGRTELSLTTGNSGDRIACG 147
           DDLG+G  ELSLTTGN+G R+ACG
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACG 209

[Close]

BLAST of Spg003417 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 2   VKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V G + F Q+ +G T V G ISGL  G HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGRTELSLTTGNSGDRIACG 147
           PDDLG+G  +LS +TGN+G R+ CG
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCG 152

[Close]

BLAST of Spg003417 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 2   VKAVAVLESNQGVSGTVFFSQNGNGPTTVRGNISGLKAGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V G + F Q+ +G T V G ISGL  G HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLIAGDDGTATFSIIDKQISLVGPNSLLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRG 129
           PDDLG+G
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:

BLAST of Spg003417 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18385.1	3.0e-76	79.14	superoxide dismutase [Cucumis melo var. makuwa]	[more]
KAG7030279.1	5.3e-73	93.84	Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022999148.1	9.0e-73	93.84	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima]	[more]
XP_022946180.1	4.5e-72	93.15	superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata]	[more]
XP_022999146.1	4.5e-72	93.79	superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147....	[more]

BLAST of Spg003417 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93258	1.7e-61	75.34	Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
Q07796	4.8e-61	73.97	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2	[more]
O49073	1.1e-60	73.29	Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii OX=70770 GN=SODCC PE=2 SV=1	[more]
P22233	1.1e-60	73.97	Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1	[more]
P27082	1.8e-60	72.60	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ...	[more]

BLAST of Spg003417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4B3	1.4e-76	79.14	Superoxide dismutase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456...	[more]
A0A6J1KIS8	4.3e-73	93.84	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV...	[more]
A0A6J1KC95	2.2e-72	93.79	Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1	[more]
A0A6J1G334	2.2e-72	93.15	Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 ...	[more]
A0A6J1G326	1.1e-71	93.10	Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1	[more]

BLAST of Spg003417 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08830.1	8.4e-61	72.60	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	8.4e-61	72.60	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	1.0e-45	61.11	copper/zinc superoxide dismutase 2	[more]
AT5G18100.1	2.7e-43	55.86	copper/zinc superoxide dismutase 3	[more]
AT5G18100.2	2.9e-37	56.69	copper/zinc superoxide dismutase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 79..88 score: 70.0 coord: 43..65 score: 78.93 coord: 98..120 score: 56.16 coord: 123..149 score: 56.82
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 11..146 e-value: 5.3E-48 score: 162.7
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 2..145 e-value: 7.37319E-61 score: 183.231
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 1..155 e-value: 8.2E-64 score: 216.4
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 2..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
None	No IPR available	PANTHER	PTHR10003:SF84	SUPEROXIDE DISMUTASE [CU-ZN]	coord: 1..146
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..146
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003417.1	Spg003417.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006801	superoxide metabolic process
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0046872	metal ion binding