Spg000244.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg000244.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold8: 38031334 .. 38038177 (+)
Sequence length	681
RNA-Seq Expression	Spg000244.1
Synteny	Spg000244.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGACCAGAGGCTTGGGCCAATTTGAACCGACCATTCGGCTCGTCTACGCGGGTCGAGCTCTTCCACCTCCGTTCGGTCCCTGCTGTCCCTGGCTGCCCCGATTCCACTCGGTTAAGCCCTGAATCGTCTCCGAACGCCTAAAAACCCTAGAGCAGGAACATGTATTTAAACCCTTCTTCGGGACTGAAGAAGGGATCTCGAACTCTATTCTCGACTTCTTCTCTTGCTCTCTAGCTCTTCCATCAGTCTTCTGACTTAAGCATCGGAGGCGATGTGGCAAGCACCACACCGGTGTGCAGGTTTACTATTTTGCAGGCCACGTCTTTCCCCTCTCATACAAATTTACGGCACGTGAAGGTCAGGTGAGTTCCTCCTATCCAGATTTTGCCATCAACAACATTCTCTTTTTTTTTTTTTTTTTTTGGTTATATATGAAGTTTCATAAATGTCCTTAAAAGACTTGTGAGGATGCCTACTGAAACGGTGTCGTTAGAATAATTCCAGAAACGGTGTCGTATTGCTTCTTGTATTTTATATTTTGTTGAGTCTGTTATGTACGGTGTGTACGTGGCAATATGTATGAGGCTGATAATATTATTCCCTCACCTTTGTTGTTCTATAAAAGCATTGTTGATTCATTGTAAGAATTATCCTGGAGAATAAGATTTCATAGAAAATTCTCTACTTGCTGCTCCTTCTCTCTCTGTTTGTGAGGTTAACTTGGTATCAGAGCCCTAGGCAAACGCCATGGGAGACGAGAATTCATCATCTTCCTCGTCAGCTGCAACAGCAGCAATTGCGTCGTCAACTACAGCAGCAAGTATCATTAGTTCTTCTTTTGGGCATCCGTTGAGCACAGTGCTTACCGTGAAGCTTGATGAAAAGAACTACCTCCTTTGGAGAGGTATGGTTCTGGCCATTCTTCGAGGTCAGAAAGTGGACGGGTATGTCTTAGGGACAAAAACCCAGCCCTCAGAGTTGATTGAAACTACGACTGATTCAGGTAAGAAACTTGTCGAAAATCCACTTTATGAGGAGTGGATGACAGTCGATCAGGCCCTTTCTGGATGGTTATTTGGGTCGATGTCTCCGGCCATTGCTGCTGATGTGGTGAATTTTAAAACATCGAGGGAAATTTGGAAAGCATTGGAAGAGGTTTATGGTGCTACTAGTAAAGCTCGAGTGAATCAGCTCAGAGGCATTCTTCAAAATACAAAGAAGGGTTCAATGAAGATGATTGACTACTTGGCCGTCATGAAACAAGCATCCGAGAATTTGAAGCTTGCGGGTAACCCTGTTTCTCTTAGTGATCTAATCTCTTATGTACTCGCAGGTCTGGACTCTGATTATATTCCAATAGTGTGCACAATAGAGGATAAGGATATAAAAACTTGGCAAGAACTCAGCTCGACTTTAGTCACTTTTGAAGGGACATTAGCTTGGTATTCTGCACCACCTAATGTTCAATCTGATTTACCTGATTTGTCTGCTCATTTGGCCATGAATAGACAGGGTAGGTTTGATAATCAGAGACAATTTAGCCCTAATAATGGAAATCGTGAAAATTGTAATAATTCTGGTGGTTACTATGGTTCTGGCAATGGGCAAAATGGACAGCAATCCTACTCTCGTGGTTTTAATGGAGGCAACCGAGGGGGTAGAGGCAGAGGGCCTAACATCTATCAGCGAGGAAATAACAAACCAACTTGTCAGCTTTGTGGCAAGTATGGTCATTCTGCTCCAGCCTGTTTTATGAGGTTTGAAGAACACTTTAACAACCCACATGCGAACAATGGTGGTTCTTCTCAAGGCAACAGTTCTGGCAATGGCTCGTCAGCTTATATTGCGACTCCGGAAATTCTTAATGACCCAAAATGGCTGGCTGACAGTGGTGCAACCAATCATGTAACAGCTGATGCGGGAAATCTTGCGATGAAGATGGACTATCATGGTAAGGAATCTCTCATTGTTGGTAATGGAACTATACTCCATATTTCTCATACTGGTGTGAGTACTGTTTCTTCAAACTTACCTGATTCTGCTTTGGTCTTGAATAATATTCTTCATGTTCCGGGTATTAAGAAGAATTTAATTAGCATCGCTAGTCTTACTGCTGATAATAATGTTGTGGTTGAGTTTCATGCTAACTATTGTGTTGTGAAGGACAAGGCTACAAAGAAGGTGATGCTGCACGGAATCCTTAAAAATGGCCTTTATCAAATCGAGCTACCTTCCATTCAAACTCCATCTTCTGCTGTCAAGTGTTCTTCCTTTGCTGGTGTCAGATCTTCATCAAATAATCCTACTAGTCGTGTTGAGTCTTCTGTTTTTCAAGTTTCAAAGTCTAAGTCATGTAATGTGTCTTCTCAATTGTGGCACAATCGGTTAGGTCATGCTTCTTCTAGTGTTGTTAAGAGTGTTTTGAAGTCTTGTAATGTGTCTAACATCTTCTTGGAATGAGAGTTTTAACTTTTGTGATGCTTGTCAAAAAGGAAAGTCCCATCGTTTACCATTCTCTCGTGCTGTCTCTCATTCTTGGCAACCACTTGAGCTTGTTCATTGTGACCTTTGGGGTCCCTCCCCTATTGTCTCAACAGCTGGTTATAAGTATTACATTAGTTTTGTAGATGATTTTACTCGATTAACACATATATATCCTCTCAAATCTAAGGGTGAGGCCCTTGCGTCTTTTTGTCAATACAAATTGTTGGTTGAAAATCGTTTTGAGAAGAAAATCAAAGCTCTTCAAACTGATTGGGGGGGAGAGTTTCGTTCCTTCACTTCCTTTTTGAGAGATAATGGTATTGAATTTCGTCATTCTTGTCCACACACGAGTCAACAAAATGGTGTCGTCGAGCGTAAACATAGGCATATTGTTGAAATGGGATTAACTCTTTTAGCTCATGCATTTATGCCTTTATCCTATTGGTGGGAGGCATTTTCTTCTGCTGTATATATTATGAATAGACTCCCAACTCCGGTTCTTGGTAATGTTTCCCCTTGGGAACAAGCCTTTCATTACCCTCCTGATCTTGGTTTTCTTCGTACCTTTGGGTGTGCGTGTTTTCCATGCCTTAGACCCTATCAGTCCAATAAGTTTCAATTTCATAGTACTAAATGTGTCTTCTTAGGATACAGCTTTGCTCACAAAGGTTATAAATGTCTAAGCTCAAGTGGTCGCTTGTTCATCTCACGACATGTTGTTTTCAATGAGAATGAGTTTCCTTTCAAACATGGTTTCTTTGAGTCTTCTGGTTCCAATCCTTCTGGAGTTGTGTCTCATCATATTCCCTTTCCACGGCCTTCTCCTTCGTGCTCTTTGCCTTCTGCTTCACCTGTTTTACCTACTGCCCCTTCCTCTCCTGTGTCTCATCCTCCTGTTGTCAATGATTTCCGTGCATCTTCATCTTCACCTTCTCAGCAGTTGCCTCCTCTAGATCAGCATGGCTCTCAACCACTTCAGAATTATTCCCCTGCTAGCTCTTCTTCTGCTACTGGAGATTTGCCAGTGAGTAGCTTGCCTATGCTGTCTTCTCCGATTGTGGATAATACAGATATTGATTCCCAGCCTTCTAATGTGGTCAGTTCAACTGTGGGTGCAAATACTCATCCAATGCAAACTCGTGCTAAAAGTGGTGTGTTTAAACCGAAGGATTGGGGTGCCTTTTTGGTGTCTGGTTCATCTAATCCTGAAGTTGAGTCTTCTTCAGTTAAGGAAGCTCTTCTGTCAAGTCATTGGAAGTCTGCGATGGACAGTGAGATGGCAGCATTAATTAGTAACAAGACTTGGAAGCTGGTTCCTCCTCCACCTAATTTGAATTTGATTGGTTCCAAGTGGATATTCAAGGTTAAGCGTAAGCCAGATGGTTCCTTTGACCGGTGCAAGGCACGTTTGGTTGCTCAAGGGTTCAACCAAATTCCGGGGATTGATTTTCACGAAACATTTAGTCCGGTGGTGAAAGCTCCAACCATCCGTATCATATTAGCTGTTGCTGTTGCGAAAAATTGGCCTATAAGGCAGTTAGATATCAATAACGCGTTTTTAAATGGTGATCTAAAGGAAGCGGTGTATATGAAGCAGCCAGTGGGTTATGTAGATCAAACCAATCCTCAGTTTGTGTGCAAATTGGAAAAAGCTCTCTATGGCCTTCGTCAAGCGCCAAGGGCTTGGTATGACAGGTTCAAAGCTACTCTACTTGAATGGGGCTTTCTGAACTCAAGGGCTGACAATTCAGTGTTTTATTTTGTGTCTCAATCCATGATTATTCTGGTGCTCATCTACGTTGATGATATACTTATTACAGGGGATAGTGCCTCGTTTATTGACTGTTTTGTGAATCGTTTAAACTCTGTTTTTGCCTTGAAGGATATTGGTTCTCTCAGCTATTATTTAGGCGTTGAGGTGTATCGTTCACCTAATGGAATTCATCTCCTCCAGACAAAGTACATTCGAGATTTGCTTGACAGAACTGGTTTGAACAACTTAAAGACTTGCTCAACGCCTGCTGCCACTGGGAAACGGTTTTCTGCCAATGAAGGTGATCCAATGAATAACCCGACTCTGTATAGGAGTGTTTTAGGCGCTCTTCAATATCTGACGCATACAAGACCGGACATTTCATTTATAGTCAACTCCTTGAGTCAGTTTCTTCAACGTCCGTCTGTGGTCCATTGGCAGGCTGTAAAGAAAGTTCTTCGTTACTTGAAAGGTACAGCTGAGTATGGTCTCTTCTTGCCGTCTTCAACGTCTCAGTTGGATATTGTTGCTTTTACGGATGCAGACTGGGCGTGTAACATTGATGATAGGAAATCTATAGCTGCCAATTGTATATTCCTTGGCCATGCTCCAGTTTCGTGGTCCTCTAAAAAGCAGAACGTTGTGGCGCGCTCGAGTACAGAGTCTGAGTATCGGTCATTAGCTAATACTGCAGCAGAGATATCGTGGATTCAGTCACTGCTTAAAGAGTTACATCTTCAGACGTCTGTTCCTCCAATTATCTGGTGCGATAATCTTAGTGCACTCTCTCTTGCTCAAAATCCCGTTTTTCACTCTAGGAGTAAGCATGTTGAATTAGACCTTCACTTTGTTCGGGACAAAGTCCTTGCCAAGGAGCTTGAAGTTCGCTATGTCCCTTCTTCGGATCAATTGGCTGATGCGCTTACGAAGCCACTCTCTGAAGTTCAATTTGAAGCCCTGCGTGCCAAACTCAGTGTGATACCATCACCCTCTCGTTTGAGGGGGGATGTGAGGATGCCTACTGAAACGGTGTCGTTAGAATAATTCCAGAAACGGTGTCGTATTGCTTCTTGTATTTTATATTTTGTTGAGTCTGTTATGTACGGTGTGTACGTGGCAATATGTATGAGGCTGATAATATTATTCCCTCACCTTTGTTGTTCTATAAAAGCATTGTTGATTCATTGTAAGAATTATCCTGGAGAATAAGATTTTATAGAAAATTCTCTACTTGCTGCTCCTTCTCTCTCTGTTTGTGAGGTTAACTAGACTCGAACTACATCTATGAAGTTCTGCAATTTTGTTTTAAATTAAAGGAGTTTCTAATTTAAGTGTGTATTATATTTAAGGGAATTAATGTACGTGTTGGTTTTGAAATAATAAGAAAACGGTATACATTTTAATTTTTCAAATTTAAGGGTGGAAATTAAAAACATGTATAGTTTAGAGGGAAAACTATAATTTAATATTTTTTATTCGTCTTAATAAAATGGAATTGTATACTATGTTTTTCCTACGGGGATTTTATTTATTTATTTATTTTTTGAAACACTATATGGAGTTTTCTTTTCTTAATAAAATAAAATAAATGTAACATGCATATGCATTAATTATAGCTGTCATTTAATTCCAGTGAATTTAGACTAAATTCAATCCTACCAACTATTTGGCAGTATTGTTTGTTTATTAACTGCATTGTTTAATTACATTCGGTGATGTCATTAAAAAAAAAAGTACATTCGATGATGAGATATTTTATTTAGATGGGTGAATTAAGGAATGAAAGAATTTGACATCTATCCAAGTATTGGAATTTATGACATTTTGGTTAAATATATAATATTTTTAACTAATTGAATTATGTTTAGATTGACTAACATGTAGTAATATAATGTAAAAAAAAACGACTAATTCATAGTAATATTAGTCGTTATGCGTCATTATGCACAATCTCGAAAAGCAAGGAGATGACAAAGGGACCCAATTCATAAAAGCACCAAATGATTAGACTTGGACTTGGATCAAGCAAAAGAGAGGAGCAGTCAGCCCTCTAGCGATTCGATTTAGTTCACTTAACTCCTAATTTATGACATTTGTGGAAGCCCCCGAGTGTTGGTTGTTGGAATATTAACTCCGATGCAACTTGGAACGAAAAGCATAAATTAGGCGGGATTGGATGGACAATACGTGACTCAGAGGAGTCTTTTAATCGGATTTGGAGGCAAACAATTTGCTAAGAAATGGTCAATCAAAAATCTGGAGGGGAAGGCATTCTTGGAAGGGCTGGAAGCTTGCCAGTCCCACCCTCTTATCAAATGTAATACCACTAAGGTGCCGGTCGAGGTGGAGAGCGATTCATCTGAATTCTTGGAGGCGATCTCTGAGCCGTCCAAGGAGCTCTCGGAATCTTCGCTCCTTGTCCACGCGATCGAAGAAAATTCAGCAAGAGCAAAGGTCTCCTTCAACTTCTGTCCGAGAGAAAAGAACGAGCTGGCTCATCACTTGGCTCGAGTTGCAGTTGAATCTGGAAATTTTTCTCTTTTTTTTTTTAAACCCTCTAGGTTTTCCGCTAGTAGTTGGATCGTTTTTTGGGTGGGATGA

mRNA sequence

ATGAACAGACCAGAGGCTTGGGCCAATTTGAACCGACCATTCGGCTCGTCTACGCGGGTCGAGCTCTTCCACCTCCGTTCGGTCCCTGCTGTCCCTGGCTGCCCCGATTCCACTCGCATCGGAGGCGATGTGGCAAGCACCACACCGGTGTGCAGGTTTACTATTTTGCAGGCCACGTCTTTCCCCTCTCATACAAATTTACGGCACGTGAAGGTCAGCTCTTCTTCTGCTACTGGAGATTTGCCAGCGGGATTGGATGGACAATACGTGACTCAGAGGAGTCTTTTAATCGGATTTGGAGGCAAACAATTTGCTAAGAAATGGTCAATCAAAAATCTGGAGGGGAAGGCATTCTTGGAAGGGCTGGAAGCTTGCCAGTCCCACCCTCTTATCAAATGTAATACCACTAAGGTGCCGGTCGAGGTGGAGAGCGATTCATCTGAATTCTTGGAGGCGATCTCTGAGCCGTCCAAGGAGCTCTCGGAATCTTCGCTCCTTGTCCACGCGATCGAAGAAAATTCAGCAAGAGCAAAGGTCTCCTTCAACTTCTGTCCGAGAGAAAAGAACGAGCTGGCTCATCACTTGGCTCGAGTTGCAGTTGAATCTGGAAATTTTTCTCTTTTTTTTTTTAAACCCTCTAGGTTTTCCGCTAGTAGTTGGATCGTTTTTTGGGTGGGATGA

Coding sequence (CDS)

ATGAACAGACCAGAGGCTTGGGCCAATTTGAACCGACCATTCGGCTCGTCTACGCGGGTCGAGCTCTTCCACCTCCGTTCGGTCCCTGCTGTCCCTGGCTGCCCCGATTCCACTCGCATCGGAGGCGATGTGGCAAGCACCACACCGGTGTGCAGGTTTACTATTTTGCAGGCCACGTCTTTCCCCTCTCATACAAATTTACGGCACGTGAAGGTCAGCTCTTCTTCTGCTACTGGAGATTTGCCAGCGGGATTGGATGGACAATACGTGACTCAGAGGAGTCTTTTAATCGGATTTGGAGGCAAACAATTTGCTAAGAAATGGTCAATCAAAAATCTGGAGGGGAAGGCATTCTTGGAAGGGCTGGAAGCTTGCCAGTCCCACCCTCTTATCAAATGTAATACCACTAAGGTGCCGGTCGAGGTGGAGAGCGATTCATCTGAATTCTTGGAGGCGATCTCTGAGCCGTCCAAGGAGCTCTCGGAATCTTCGCTCCTTGTCCACGCGATCGAAGAAAATTCAGCAAGAGCAAAGGTCTCCTTCAACTTCTGTCCGAGAGAAAAGAACGAGCTGGCTCATCACTTGGCTCGAGTTGCAGTTGAATCTGGAAATTTTTCTCTTTTTTTTTTTAAACCCTCTAGGTTTTCCGCTAGTAGTTGGATCGTTTTTTGGGTGGGATGA

Protein sequence

MNRPEAWANLNRPFGSSTRVELFHLRSVPAVPGCPDSTRIGGDVASTTPVCRFTILQATSFPSHTNLRHVKVSSSSATGDLPAGLDGQYVTQRSLLIGFGGKQFAKKWSIKNLEGKAFLEGLEACQSHPLIKCNTTKVPVEVESDSSEFLEAISEPSKELSESSLLVHAIEENSARAKVSFNFCPREKNELAHHLARVAVESGNFSLFFFKPSRFSASSWIVFWVG

Homology

The following BLAST results are available for this feature:

BLAST of Spg000244.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg000244.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg000244.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg000244.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 95..198 e-value: 2.5E-9 score: 37.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 74..204 e-value: 2.2E-7 score: 32.9
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 98..197 e-value: 2.95769E-8 score: 48.8496
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 108..202

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg000244	Spg000244	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg000244.1-cds	Spg000244.1-cds-scaffold8:38031334..38031449	CDS
Spg000244.1-cds	Spg000244.1-cds-scaffold8:38031600..38031701	CDS
Spg000244.1-cds	Spg000244.1-cds-scaffold8:38034820..38034847	CDS
Spg000244.1-cds	Spg000244.1-cds-scaffold8:38037743..38038177	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg000244.1	Spg000244.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity