Spg000244 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000244
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold8: 38031334 .. 38038177 (+)
RNA-Seq ExpressionSpg000244
SyntenySpg000244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGACCAGAGGCTTGGGCCAATTTGAACCGACCATTCGGCTCGTCTACGCGGGTCGAGCTCTTCCACCTCCGTTCGGTCCCTGCTGTCCCTGGCTGCCCCGATTCCACTCGGTTAAGCCCTGAATCGTCTCCGAACGCCTAAAAACCCTAGAGCAGGAACATGTATTTAAACCCTTCTTCGGGACTGAAGAAGGGATCTCGAACTCTATTCTCGACTTCTTCTCTTGCTCTCTAGCTCTTCCATCAGTCTTCTGACTTAAGCATCGGAGGCGATGTGGCAAGCACCACACCGGTGTGCAGGTTTACTATTTTGCAGGCCACGTCTTTCCCCTCTCATACAAATTTACGGCACGTGAAGGTCAGGTGAGTTCCTCCTATCCAGATTTTGCCATCAACAACATTCTCTTTTTTTTTTTTTTTTTTTGGTTATATATGAAGTTTCATAAATGTCCTTAAAAGACTTGTGAGGATGCCTACTGAAACGGTGTCGTTAGAATAATTCCAGAAACGGTGTCGTATTGCTTCTTGTATTTTATATTTTGTTGAGTCTGTTATGTACGGTGTGTACGTGGCAATATGTATGAGGCTGATAATATTATTCCCTCACCTTTGTTGTTCTATAAAAGCATTGTTGATTCATTGTAAGAATTATCCTGGAGAATAAGATTTCATAGAAAATTCTCTACTTGCTGCTCCTTCTCTCTCTGTTTGTGAGGTTAACTTGGTATCAGAGCCCTAGGCAAACGCCATGGGAGACGAGAATTCATCATCTTCCTCGTCAGCTGCAACAGCAGCAATTGCGTCGTCAACTACAGCAGCAAGTATCATTAGTTCTTCTTTTGGGCATCCGTTGAGCACAGTGCTTACCGTGAAGCTTGATGAAAAGAACTACCTCCTTTGGAGAGGTATGGTTCTGGCCATTCTTCGAGGTCAGAAAGTGGACGGGTATGTCTTAGGGACAAAAACCCAGCCCTCAGAGTTGATTGAAACTACGACTGATTCAGGTAAGAAACTTGTCGAAAATCCACTTTATGAGGAGTGGATGACAGTCGATCAGGCCCTTTCTGGATGGTTATTTGGGTCGATGTCTCCGGCCATTGCTGCTGATGTGGTGAATTTTAAAACATCGAGGGAAATTTGGAAAGCATTGGAAGAGGTTTATGGTGCTACTAGTAAAGCTCGAGTGAATCAGCTCAGAGGCATTCTTCAAAATACAAAGAAGGGTTCAATGAAGATGATTGACTACTTGGCCGTCATGAAACAAGCATCCGAGAATTTGAAGCTTGCGGGTAACCCTGTTTCTCTTAGTGATCTAATCTCTTATGTACTCGCAGGTCTGGACTCTGATTATATTCCAATAGTGTGCACAATAGAGGATAAGGATATAAAAACTTGGCAAGAACTCAGCTCGACTTTAGTCACTTTTGAAGGGACATTAGCTTGGTATTCTGCACCACCTAATGTTCAATCTGATTTACCTGATTTGTCTGCTCATTTGGCCATGAATAGACAGGGTAGGTTTGATAATCAGAGACAATTTAGCCCTAATAATGGAAATCGTGAAAATTGTAATAATTCTGGTGGTTACTATGGTTCTGGCAATGGGCAAAATGGACAGCAATCCTACTCTCGTGGTTTTAATGGAGGCAACCGAGGGGGTAGAGGCAGAGGGCCTAACATCTATCAGCGAGGAAATAACAAACCAACTTGTCAGCTTTGTGGCAAGTATGGTCATTCTGCTCCAGCCTGTTTTATGAGGTTTGAAGAACACTTTAACAACCCACATGCGAACAATGGTGGTTCTTCTCAAGGCAACAGTTCTGGCAATGGCTCGTCAGCTTATATTGCGACTCCGGAAATTCTTAATGACCCAAAATGGCTGGCTGACAGTGGTGCAACCAATCATGTAACAGCTGATGCGGGAAATCTTGCGATGAAGATGGACTATCATGGTAAGGAATCTCTCATTGTTGGTAATGGAACTATACTCCATATTTCTCATACTGGTGTGAGTACTGTTTCTTCAAACTTACCTGATTCTGCTTTGGTCTTGAATAATATTCTTCATGTTCCGGGTATTAAGAAGAATTTAATTAGCATCGCTAGTCTTACTGCTGATAATAATGTTGTGGTTGAGTTTCATGCTAACTATTGTGTTGTGAAGGACAAGGCTACAAAGAAGGTGATGCTGCACGGAATCCTTAAAAATGGCCTTTATCAAATCGAGCTACCTTCCATTCAAACTCCATCTTCTGCTGTCAAGTGTTCTTCCTTTGCTGGTGTCAGATCTTCATCAAATAATCCTACTAGTCGTGTTGAGTCTTCTGTTTTTCAAGTTTCAAAGTCTAAGTCATGTAATGTGTCTTCTCAATTGTGGCACAATCGGTTAGGTCATGCTTCTTCTAGTGTTGTTAAGAGTGTTTTGAAGTCTTGTAATGTGTCTAACATCTTCTTGGAATGAGAGTTTTAACTTTTGTGATGCTTGTCAAAAAGGAAAGTCCCATCGTTTACCATTCTCTCGTGCTGTCTCTCATTCTTGGCAACCACTTGAGCTTGTTCATTGTGACCTTTGGGGTCCCTCCCCTATTGTCTCAACAGCTGGTTATAAGTATTACATTAGTTTTGTAGATGATTTTACTCGATTAACACATATATATCCTCTCAAATCTAAGGGTGAGGCCCTTGCGTCTTTTTGTCAATACAAATTGTTGGTTGAAAATCGTTTTGAGAAGAAAATCAAAGCTCTTCAAACTGATTGGGGGGGAGAGTTTCGTTCCTTCACTTCCTTTTTGAGAGATAATGGTATTGAATTTCGTCATTCTTGTCCACACACGAGTCAACAAAATGGTGTCGTCGAGCGTAAACATAGGCATATTGTTGAAATGGGATTAACTCTTTTAGCTCATGCATTTATGCCTTTATCCTATTGGTGGGAGGCATTTTCTTCTGCTGTATATATTATGAATAGACTCCCAACTCCGGTTCTTGGTAATGTTTCCCCTTGGGAACAAGCCTTTCATTACCCTCCTGATCTTGGTTTTCTTCGTACCTTTGGGTGTGCGTGTTTTCCATGCCTTAGACCCTATCAGTCCAATAAGTTTCAATTTCATAGTACTAAATGTGTCTTCTTAGGATACAGCTTTGCTCACAAAGGTTATAAATGTCTAAGCTCAAGTGGTCGCTTGTTCATCTCACGACATGTTGTTTTCAATGAGAATGAGTTTCCTTTCAAACATGGTTTCTTTGAGTCTTCTGGTTCCAATCCTTCTGGAGTTGTGTCTCATCATATTCCCTTTCCACGGCCTTCTCCTTCGTGCTCTTTGCCTTCTGCTTCACCTGTTTTACCTACTGCCCCTTCCTCTCCTGTGTCTCATCCTCCTGTTGTCAATGATTTCCGTGCATCTTCATCTTCACCTTCTCAGCAGTTGCCTCCTCTAGATCAGCATGGCTCTCAACCACTTCAGAATTATTCCCCTGCTAGCTCTTCTTCTGCTACTGGAGATTTGCCAGTGAGTAGCTTGCCTATGCTGTCTTCTCCGATTGTGGATAATACAGATATTGATTCCCAGCCTTCTAATGTGGTCAGTTCAACTGTGGGTGCAAATACTCATCCAATGCAAACTCGTGCTAAAAGTGGTGTGTTTAAACCGAAGGATTGGGGTGCCTTTTTGGTGTCTGGTTCATCTAATCCTGAAGTTGAGTCTTCTTCAGTTAAGGAAGCTCTTCTGTCAAGTCATTGGAAGTCTGCGATGGACAGTGAGATGGCAGCATTAATTAGTAACAAGACTTGGAAGCTGGTTCCTCCTCCACCTAATTTGAATTTGATTGGTTCCAAGTGGATATTCAAGGTTAAGCGTAAGCCAGATGGTTCCTTTGACCGGTGCAAGGCACGTTTGGTTGCTCAAGGGTTCAACCAAATTCCGGGGATTGATTTTCACGAAACATTTAGTCCGGTGGTGAAAGCTCCAACCATCCGTATCATATTAGCTGTTGCTGTTGCGAAAAATTGGCCTATAAGGCAGTTAGATATCAATAACGCGTTTTTAAATGGTGATCTAAAGGAAGCGGTGTATATGAAGCAGCCAGTGGGTTATGTAGATCAAACCAATCCTCAGTTTGTGTGCAAATTGGAAAAAGCTCTCTATGGCCTTCGTCAAGCGCCAAGGGCTTGGTATGACAGGTTCAAAGCTACTCTACTTGAATGGGGCTTTCTGAACTCAAGGGCTGACAATTCAGTGTTTTATTTTGTGTCTCAATCCATGATTATTCTGGTGCTCATCTACGTTGATGATATACTTATTACAGGGGATAGTGCCTCGTTTATTGACTGTTTTGTGAATCGTTTAAACTCTGTTTTTGCCTTGAAGGATATTGGTTCTCTCAGCTATTATTTAGGCGTTGAGGTGTATCGTTCACCTAATGGAATTCATCTCCTCCAGACAAAGTACATTCGAGATTTGCTTGACAGAACTGGTTTGAACAACTTAAAGACTTGCTCAACGCCTGCTGCCACTGGGAAACGGTTTTCTGCCAATGAAGGTGATCCAATGAATAACCCGACTCTGTATAGGAGTGTTTTAGGCGCTCTTCAATATCTGACGCATACAAGACCGGACATTTCATTTATAGTCAACTCCTTGAGTCAGTTTCTTCAACGTCCGTCTGTGGTCCATTGGCAGGCTGTAAAGAAAGTTCTTCGTTACTTGAAAGGTACAGCTGAGTATGGTCTCTTCTTGCCGTCTTCAACGTCTCAGTTGGATATTGTTGCTTTTACGGATGCAGACTGGGCGTGTAACATTGATGATAGGAAATCTATAGCTGCCAATTGTATATTCCTTGGCCATGCTCCAGTTTCGTGGTCCTCTAAAAAGCAGAACGTTGTGGCGCGCTCGAGTACAGAGTCTGAGTATCGGTCATTAGCTAATACTGCAGCAGAGATATCGTGGATTCAGTCACTGCTTAAAGAGTTACATCTTCAGACGTCTGTTCCTCCAATTATCTGGTGCGATAATCTTAGTGCACTCTCTCTTGCTCAAAATCCCGTTTTTCACTCTAGGAGTAAGCATGTTGAATTAGACCTTCACTTTGTTCGGGACAAAGTCCTTGCCAAGGAGCTTGAAGTTCGCTATGTCCCTTCTTCGGATCAATTGGCTGATGCGCTTACGAAGCCACTCTCTGAAGTTCAATTTGAAGCCCTGCGTGCCAAACTCAGTGTGATACCATCACCCTCTCGTTTGAGGGGGGATGTGAGGATGCCTACTGAAACGGTGTCGTTAGAATAATTCCAGAAACGGTGTCGTATTGCTTCTTGTATTTTATATTTTGTTGAGTCTGTTATGTACGGTGTGTACGTGGCAATATGTATGAGGCTGATAATATTATTCCCTCACCTTTGTTGTTCTATAAAAGCATTGTTGATTCATTGTAAGAATTATCCTGGAGAATAAGATTTTATAGAAAATTCTCTACTTGCTGCTCCTTCTCTCTCTGTTTGTGAGGTTAACTAGACTCGAACTACATCTATGAAGTTCTGCAATTTTGTTTTAAATTAAAGGAGTTTCTAATTTAAGTGTGTATTATATTTAAGGGAATTAATGTACGTGTTGGTTTTGAAATAATAAGAAAACGGTATACATTTTAATTTTTCAAATTTAAGGGTGGAAATTAAAAACATGTATAGTTTAGAGGGAAAACTATAATTTAATATTTTTTATTCGTCTTAATAAAATGGAATTGTATACTATGTTTTTCCTACGGGGATTTTATTTATTTATTTATTTTTTGAAACACTATATGGAGTTTTCTTTTCTTAATAAAATAAAATAAATGTAACATGCATATGCATTAATTATAGCTGTCATTTAATTCCAGTGAATTTAGACTAAATTCAATCCTACCAACTATTTGGCAGTATTGTTTGTTTATTAACTGCATTGTTTAATTACATTCGGTGATGTCATTAAAAAAAAAAGTACATTCGATGATGAGATATTTTATTTAGATGGGTGAATTAAGGAATGAAAGAATTTGACATCTATCCAAGTATTGGAATTTATGACATTTTGGTTAAATATATAATATTTTTAACTAATTGAATTATGTTTAGATTGACTAACATGTAGTAATATAATGTAAAAAAAAACGACTAATTCATAGTAATATTAGTCGTTATGCGTCATTATGCACAATCTCGAAAAGCAAGGAGATGACAAAGGGACCCAATTCATAAAAGCACCAAATGATTAGACTTGGACTTGGATCAAGCAAAAGAGAGGAGCAGTCAGCCCTCTAGCGATTCGATTTAGTTCACTTAACTCCTAATTTATGACATTTGTGGAAGCCCCCGAGTGTTGGTTGTTGGAATATTAACTCCGATGCAACTTGGAACGAAAAGCATAAATTAGGCGGGATTGGATGGACAATACGTGACTCAGAGGAGTCTTTTAATCGGATTTGGAGGCAAACAATTTGCTAAGAAATGGTCAATCAAAAATCTGGAGGGGAAGGCATTCTTGGAAGGGCTGGAAGCTTGCCAGTCCCACCCTCTTATCAAATGTAATACCACTAAGGTGCCGGTCGAGGTGGAGAGCGATTCATCTGAATTCTTGGAGGCGATCTCTGAGCCGTCCAAGGAGCTCTCGGAATCTTCGCTCCTTGTCCACGCGATCGAAGAAAATTCAGCAAGAGCAAAGGTCTCCTTCAACTTCTGTCCGAGAGAAAAGAACGAGCTGGCTCATCACTTGGCTCGAGTTGCAGTTGAATCTGGAAATTTTTCTCTTTTTTTTTTTAAACCCTCTAGGTTTTCCGCTAGTAGTTGGATCGTTTTTTGGGTGGGATGA

mRNA sequence

ATGAACAGACCAGAGGCTTGGGCCAATTTGAACCGACCATTCGGCTCGTCTACGCGGGTCGAGCTCTTCCACCTCCGTTCGGTCCCTGCTGTCCCTGGCTGCCCCGATTCCACTCGCATCGGAGGCGATGTGGCAAGCACCACACCGGTGTGCAGGTTTACTATTTTGCAGGCCACGTCTTTCCCCTCTCATACAAATTTACGGCACGTGAAGGTCAGCTCTTCTTCTGCTACTGGAGATTTGCCAGCGGGATTGGATGGACAATACGTGACTCAGAGGAGTCTTTTAATCGGATTTGGAGGCAAACAATTTGCTAAGAAATGGTCAATCAAAAATCTGGAGGGGAAGGCATTCTTGGAAGGGCTGGAAGCTTGCCAGTCCCACCCTCTTATCAAATGTAATACCACTAAGGTGCCGGTCGAGGTGGAGAGCGATTCATCTGAATTCTTGGAGGCGATCTCTGAGCCGTCCAAGGAGCTCTCGGAATCTTCGCTCCTTGTCCACGCGATCGAAGAAAATTCAGCAAGAGCAAAGGTCTCCTTCAACTTCTGTCCGAGAGAAAAGAACGAGCTGGCTCATCACTTGGCTCGAGTTGCAGTTGAATCTGGAAATTTTTCTCTTTTTTTTTTTAAACCCTCTAGGTTTTCCGCTAGTAGTTGGATCGTTTTTTGGGTGGGATGA

Coding sequence (CDS)

ATGAACAGACCAGAGGCTTGGGCCAATTTGAACCGACCATTCGGCTCGTCTACGCGGGTCGAGCTCTTCCACCTCCGTTCGGTCCCTGCTGTCCCTGGCTGCCCCGATTCCACTCGCATCGGAGGCGATGTGGCAAGCACCACACCGGTGTGCAGGTTTACTATTTTGCAGGCCACGTCTTTCCCCTCTCATACAAATTTACGGCACGTGAAGGTCAGCTCTTCTTCTGCTACTGGAGATTTGCCAGCGGGATTGGATGGACAATACGTGACTCAGAGGAGTCTTTTAATCGGATTTGGAGGCAAACAATTTGCTAAGAAATGGTCAATCAAAAATCTGGAGGGGAAGGCATTCTTGGAAGGGCTGGAAGCTTGCCAGTCCCACCCTCTTATCAAATGTAATACCACTAAGGTGCCGGTCGAGGTGGAGAGCGATTCATCTGAATTCTTGGAGGCGATCTCTGAGCCGTCCAAGGAGCTCTCGGAATCTTCGCTCCTTGTCCACGCGATCGAAGAAAATTCAGCAAGAGCAAAGGTCTCCTTCAACTTCTGTCCGAGAGAAAAGAACGAGCTGGCTCATCACTTGGCTCGAGTTGCAGTTGAATCTGGAAATTTTTCTCTTTTTTTTTTTAAACCCTCTAGGTTTTCCGCTAGTAGTTGGATCGTTTTTTGGGTGGGATGA

Protein sequence

MNRPEAWANLNRPFGSSTRVELFHLRSVPAVPGCPDSTRIGGDVASTTPVCRFTILQATSFPSHTNLRHVKVSSSSATGDLPAGLDGQYVTQRSLLIGFGGKQFAKKWSIKNLEGKAFLEGLEACQSHPLIKCNTTKVPVEVESDSSEFLEAISEPSKELSESSLLVHAIEENSARAKVSFNFCPREKNELAHHLARVAVESGNFSLFFFKPSRFSASSWIVFWVG
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 95..198
e-value: 2.5E-9
score: 37.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 74..204
e-value: 2.2E-7
score: 32.9
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 98..197
e-value: 2.95769E-8
score: 48.8496
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 108..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000244.1Spg000244.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity