Sed0025823.1 (mRNA) Chayote v1

Overview


Name	Sed0025823.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 15871031 .. 15874132 (+)
Sequence length	432
RNA-Seq Expression	Sed0025823.1
Synteny	Sed0025823.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAATGTTTGTCAAAAACATCCAGCAACAAGCGCGGTGGTCGGGAGTTGAGAGGTCGACAAGGCGAGGAAGATGAGAAGCAGCAGAATGAGAAGGGGCACGAAGAGGACCGCCATAGGCGGTGGTGGCAGCGGCGGAAGAAGCAGAGGCAGCACAAGGAGGGACAGTGCCCAAAGAAACAACAAAGCCATGGTGGAGTAGTAGACCATCTAAACCAAACCCTACTTTGGCTTGTTTTAGCTTTCCTCCATATGTTTATGAATATCGGTTGTCTGAGCTGTGGCGGCGCCGCCGTTGGAAGGCCGGAGTTGGTGGTCGTGGTGGCGGCTAAGGGCGGAGGAGGTGGATTTGTGGGGGATGTGAGAGATAATGGAAATGGTGAGTACAGACACAGGGTCTTATATATAATATGTAAAAGAGGGTTATCTATTGAAAGAGAAAAAAAGAAAAATTTAGTAATTTTTCTTTGAAGTGGAACGAGTACAGACTTTCTACCATTTGTGAATAATATTATGTTATATTTTTAATATATCATTTATCTTTGATTATCATCATCCTTTTATATAATTTTAATGTTTTTTTCATTTATATTATTAATGAGGCACATTATTATCTTCGTAAACAGTGAGAAATATATACTTGCAAACAAGCTAGTTAAATATTGAAGTTCTTATTTATTTTCTTTCTTTTTATTACTTTTAATATGCATTGTTCACTGGTGTTGAATTGATTTACAACCAAACAATAAAATTATTGCGTCACTCACCCATTCGGTAAGTATTATATTAGTTTTGATACATATTTAACCCTGAAAATAACAAAATATCTTATTGTTAACCCTCATTCTCAATGTTGGACAAAATTTATTTGATTAAGAACAAAACGTATATGTATATTTTAAAAAATTATTATTTTCTTAATTTATAAAACTTACGTATAAATAATAATAATAAAATTTATTTTATTTCAAACAAAATGTATAGTGATAAAAATTCGAAACATTATGACCCCATTTGACTACCATTTTGTTTTTAGTTTTTGGTTTTTGAAATTTAAGTCTACAATAATTATTTTACCATATATATATATATTTATTTATTTATTTCGATATCTACTTCTTACCTATATTTTTAGAAACTAAATCAAAATTTGAAAAAAAAAAAGCAGCTTTCAAAAGCTTGTTTTTGTTTTGTTGAGATATGCCTTGAATGTTGAATGCCCTGCGATTAGTAGTCGGAAGTCTCACTGCCCGGTCAGTGAGTGGGAGTGCAGGGGCAACACCCCCGTTGCGTAAATGTTTTTTGCAGTGTAACAAACGCATCCCACATTGCAGCAATGCAATATGCATTCGTTTAGCACATCCTGCTTTTGCACTCCGCAGTGTTAGTGCATCCTGCATCCACACTTCGTAGCGTGAGCACATCTCGCATTTCCGCATTCTATTGCGCAACTTTGATTTCTTGTTTACGCATTATGCAATAGAGTTTAATGATAATGCATTATGTAATCTATATTTCGCATTCCTTAATAAAATTATGCCCCCTCTCTGCCTGTGGATTAGCTAACACAACGTTAGTGAACCATGTAAATTTCTCTGTTGTTTTCTTCTACTTTTTACATTTTCTTTATCTTCGCATGAGTTATTGATTGCCGTTTTCATAACATGTTTTTTAAATTTGCTTAGCATCCACCTACTTTCTTAAAAAAAAAGATGAATATTATAGAAAACATGGAACACATGGTAAAAAATTTGTGTAAAAATAAGTTTAAATTTCAAAAACCAAAAACAAAAAAGAAAATAATTATCAAACGGGATCAATATAACTCTTATGGAAGTGAATAATGCTTTTGAGTTGGTTTGCAAAATAAGAACTATTTAATGATGTTTGTGGAACAACATTTTACTCTTATTTAATCTTTTATAATTTTTATAGTTCTTGTTCGGTCCTTATACACTTTCTATTTCTTTTCATCTCTTGAACTTGTCCCATACAATTTTTTTCGCTGATGTTTGGTGTTTACCTTTCAAATTTCTGTTACTTTTTCCTTTCGTTTTTCTCTCTTAAAATTCATAAAATATATTTTAGTTCAAATTACCAAAACTTAATATATGCATAGTTATATTGATATCTTATGCAACCTAATAATTAATAGGTTACATATTTGAAGATCTTTCTCCCACGGTACTCAAAAAAAAAAAAAAAAAAAAAAATCTTTCTCCCACGGTTAAATTAAAAAAATTATGCTTGTATTTTAGAAACTGCCAACAAAAGTAAAGTCCAATTAGCATGATACTTTTGACCGGAAATTCAGGAGTTTAAATTTACCATCCAAAAATGGTTAGAAATTAAAGAAAGAAAAAAAAACTTTCGATTTTGAAACCACTTACGGTTTTGTGAAAGCTTAGGACCTGAATTAGAAAGCTAAAATATGATTTAAACTTAATTGGCATATAAGCTGACTTAAAAATATAATATTTATTCATAAAAAAAAATTAAATTAATATAAACCAAAGTTGAAAATGGTAATTTGCTAAGATAGTCCATAGAAAAGTCAAAATGGTAGAGCAGCCACAAGATTATTGCATTTGTCCATTCAGCCCCCTTCCCTCTTTCTCCAACCTCCACTATCAATTATCCTTCTTTTTTAAGTAATAAGGAAAAAAAGATAATACAATCTAGGCAATTTCATTGGTTGAGTTTTGGCATTTGTCTTTTTTTTTTTTCTTTATTTAAGGGTGAAAGTTAGTTTAGGGTTGGTTTTATAATAATAATAATAATAGTTTTTAATGCATGTTTATTAGATTTTCTTTTGTGTTTGTAAGAATACTTTATTAACATTTAATTTTTTAGTTGAATCCAAATGTCTTTAACTAGAAAAGCTATGACAGAGTCCCTCTAAAAAAGATAATTAATTGACCAATTTTTTTAAATGAAAAATAAATGCGAAAGAAAAATCACTTAAAAATATGAAAAAGATATATTATTTTTTTAAATACTAAGAAAGGATTATTTTCAAATAAACTTAAATTTACATTTTTTTTTTCAGTCCATCAAGACCCGTGGGTGAAAACTTGGATGTTCGACTTAAAAAAATAA

mRNA sequence

ATGCAAAAATGTTTGTCAAAAACATCCAGCAACAAGCGCGGTGGTCGGGAGTTGAGAGGTCGACAAGGCGAGGAAGATGAGAAGCAGCAGAATGAGAAGGGGCACGAAGAGGACCGCCATAGGCGGTGGTGGCAGCGGCGGAAGAAGCAGAGGCAGCACAAGGAGGGACAGTGCCCAAAGAAACAACAAAGCCATGGTGGAGTAGTAGACCATCTAAACCAAACCCTACTTTGGCTTGTTTTAGCTTTCCTCCATATGTTTATGAATATCGGTTGTCTGAGCTGTGGCGGCGCCGCCGTTGGAAGGCCGGAGTTGGTGGTCGTGGTGGCGGCTAAGGGCGGAGGAGGTGGATTTGTGGGGGATGTGAGAGATAATGGAAATGTCCATCAAGACCCGTGGGTGAAAACTTGGATGTTCGACTTAAAAAAATAA

Coding sequence (CDS)

ATGCAAAAATGTTTGTCAAAAACATCCAGCAACAAGCGCGGTGGTCGGGAGTTGAGAGGTCGACAAGGCGAGGAAGATGAGAAGCAGCAGAATGAGAAGGGGCACGAAGAGGACCGCCATAGGCGGTGGTGGCAGCGGCGGAAGAAGCAGAGGCAGCACAAGGAGGGACAGTGCCCAAAGAAACAACAAAGCCATGGTGGAGTAGTAGACCATCTAAACCAAACCCTACTTTGGCTTGTTTTAGCTTTCCTCCATATGTTTATGAATATCGGTTGTCTGAGCTGTGGCGGCGCCGCCGTTGGAAGGCCGGAGTTGGTGGTCGTGGTGGCGGCTAAGGGCGGAGGAGGTGGATTTGTGGGGGATGTGAGAGATAATGGAAATGTCCATCAAGACCCGTGGGTGAAAACTTGGATGTTCGACTTAAAAAAATAA

Protein sequence

MQKCLSKTSSNKRGGRELRGRQGEEDEKQQNEKGHEEDRHRRWWQRRKKQRQHKEGQCPKKQQSHGGVVDHLNQTLLWLVLAFLHMFMNIGCLSCGGAAVGRPELVVVVAAKGGGGGFVGDVRDNGNVHQDPWVKTWMFDLKK

Homology

The following BLAST results are available for this feature:

BLAST of Sed0025823.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0025823.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0025823.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0025823.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0025823	Sed0025823	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0025823.1-exon	Sed0025823.1-exon-LG03:15871031..15871412	exon
Sed0025823.1-exon	Sed0025823.1-exon-LG03:15874083..15874132	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0025823.1-cds	Sed0025823.1-cds-LG03:15871031..15871412	CDS
Sed0025823.1-cds	Sed0025823.1-cds-LG03:15874083..15874132	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0025823.1	Sed0025823.1-protein	polypeptide