Sed0022841.1 (mRNA) Chayote v1

Overview


Name	Sed0022841.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RPM1-interacting protein 4-like
Location	LG08: 33717491 .. 33720113 (-)
Sequence length	663
RNA-Seq Expression	Sed0022841.1
Synteny	Sed0022841.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGAGTATTTTTCCTCTTTTCTATATATTAATGTTGAACCACCTTATGCTTTCCTCAATATTATCACACTCATATTTCATGATCTTATAATAAATATGTATAAATAGATGATAACTGTCAATTAAATTAAACTCATTAATGAAGAGTTACAAATATTTAACTTTAAAATTTAAATTTTTTGAAAAAGAACTAATTTTCAAGTAGCTTTAACTTAAGGAATCGTTTGAATTGCGTTTTGAATGGGTATTCACTTTGATAAATGATTTTTTAGGATTATTTTGACTAGTTACAAAATTTAATCTTTTTATTAATAGTTAATTTTTTCTAAGAAGAGTTACAAATAATGACTTATTTGGATATTAATATTTAAAAGGATAAATTATTTTGAGTGATTATAAATAAACTATTTTGAATAATTAAAAATTAATGACCATCAATGAAAAATTAAATTGAATAATTTAAAAATAAATAATTAAAAATGAAAAAATTATTTTAAATAGTTTAAATATATTTGTTTAAAGTAATAATTACTATACTCATATCAAAATCAGTAAATTCTCTATAAATTCAACAAACAAAACAAATACAAGGACGTTAATTATCTGGAATTAATTCATAATCTGTTAAATTGGAAAGTTTAATTTAAAATTAAATGGCAGGGGGCAAAGTCGTCATCTCACGTTCCGAAATTCGGGGATTGGGACACAGACGACGTACCGTACACCATCTGTTTCGAGCACGCCAGCGAACTCCGAGCCGCCGGCCTCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGATCTTCGCTCCGTCCGCCCCCGCAGACCGGCGCCGGCACCGGGTTCAGGCCGCCACGCACGACGGCGGAAAACACCACCAGCAGCAGCAGCGGCGGCGGCGGCCCGGAGCGGAAGGAGCGATCGAACCGAGCTCCGGATTGGAGAAATTGAAGAGCGAGAGAAGCAGCTCCGATTACGCGCTGCTACAGAAGGAGCGGAAGCAGAGTAGGAGGAAGAAGAGCGGTGAGAATGGAGCGGAAGGAATCGGCAGATCTGCTCCGGCGGTGGGCGGAAACCCTAACCCTAAGTCTCGGCGGAGTGTTGAAGCTGAAATGGTGGCGTCGGTGCCGAAATCGGGAGATGGATACACGGCGGCTTTCAATAAAGTGAAGATCGAGAAGCAAATTGCGGCTTCCAAACCTCAGGCGGTTCCTCCGCCATTGATGAATCAAACCAAACACCCCATTGCTCACACCAACACCTCTACTTCATTTGCTTCCAAGGTACTACTCATCCACTTATTGACCTTCTTTTATTTTTAACCTTTTAAATATTTTTGTTCCCAAAGAAAATAAATTTAATACGGCTCAATTTTAGTCTTGAAATAATAAAATATTTAGTTTGTTTATATCCTATATAATATTAACTAAAATGGTACTTAAATTAATTTTAAATTTTAATATACCGATGAAATAATTATTTTAACTTTATGTAAATTTATTTTTTAAAATAAAAGTAAATTAAAATAATACAAAAGATGGAGAGAAATATCACGAAACTTTAAAAGAATATATATCACAAATAAAAATGTTCAATCTTGAAATTAGAAATTTAAAGATCAATTGAAAATAAATATTAAATATGAGGATCATAAATGTAATTTTTACTAAATTTAAATGCATGATAATTTAACCGAATGTGATGATTTCACGATTGGTTATGTGATATTAATCTATTTTCATTCCATAGTCACAAATTCGATTCTTGGAATTGGTAGTTGTAATCCCTCTTTCTCCAATTTATAATAAAAAAAATGCACGATAATTTAAAAAAGGGAAATTGTGTTGGACAATCCAATATTTCAAAAAATAATTACAAATTTAGGCAAATTTGAATTTTTTTTGAATCCATAATTAGATATACGACATAATTAATATTCTTATAATGTAGAGTATGATTACATTCTTTTTTATTATTAATACATTAAATCTTATATGTTATTAGAATAGTAGTGTATATTAATACAATATTATGTATTAATTATATCGTATAGTTTGTATACTATGATTACAAAATATTTTTTTGGCCTTGTATCAGTAAATATTTTTACAATTTAACTTGCTTCTAAAAATACTTCTTTCAAAAAAATTAGAGTCAACTTACTTTTTTTTAGATGGGTTAAAACTTTTATTTTCTAATTTTTTTATTAAATTCAATTAAATTAATATGTATTATTTTTTTAAAAAAATAATAATAAGGTCAATAAACTATTCTTATTTTTTAAAGGAGATGAATTTAAAATTAAAACTATCTTGAAACTTGGGATTGGTCCATTCACATCAATTAATGTTCGAATTTAAAATTATGCTGTATTATGCATAATCAATATAAAGTGAAATGAAATAACTAATACAGCGGGTTAACAACCTAACAGCTTGGCTTTGTACTCAAAATAACTGACTTCAACCTTACATTCAATTTAATTAACCAACCACATTCCCTAATTACCGTATAATGCAGATATGAAATATTTGTTATTATTATTACTATTTAAAGATAATGAAATATTTATTTATTAATGCAGATATGTTGTTGTTTTTGTCCAAAGTGA

mRNA sequence

ATGGCGGGGGCAAAGTCGTCATCTCACGTTCCGAAATTCGGGGATTGGGACACAGACGACGTACCGTACACCATCTGTTTCGAGCACGCCAGCGAACTCCGAGCCGCCGGCCTCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGATCTTCGCTCCGTCCGCCCCCGCAGACCGGCGCCGGCACCGGGTTCAGGCCGCCACGCACGACGGCGGAAAACACCACCAGCAGCAGCAGCGGCGGCGGCGGCCCGGAGCGGAAGGAGCGATCGAACCGAGCTCCGGATTGGAGAAATTGAAGAGCGAGAGAAGCAGCTCCGATTACGCGCTGCTACAGAAGGAGCGGAAGCAGAGTAGGAGGAAGAAGAGCGGTGAGAATGGAGCGGAAGGAATCGGCAGATCTGCTCCGGCGGTGGGCGGAAACCCTAACCCTAAGTCTCGGCGGAGTGTTGAAGCTGAAATGGTGGCGTCGGTGCCGAAATCGGGAGATGGATACACGGCGGCTTTCAATAAAGTGAAGATCGAGAAGCAAATTGCGGCTTCCAAACCTCAGGCGGTTCCTCCGCCATTGATGAATCAAACCAAACACCCCATTGCTCACACCAACACCTCTACTTCATTTGCTTCCAAGATATGTTGTTGTTTTTGTCCAAAGTGA

Coding sequence (CDS)

ATGGCGGGGGCAAAGTCGTCATCTCACGTTCCGAAATTCGGGGATTGGGACACAGACGACGTACCGTACACCATCTGTTTCGAGCACGCCAGCGAACTCCGAGCCGCCGGCCTCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGGAGATCTTCGCTCCGTCCGCCCCCGCAGACCGGCGCCGGCACCGGGTTCAGGCCGCCACGCACGACGGCGGAAAACACCACCAGCAGCAGCAGCGGCGGCGGCGGCCCGGAGCGGAAGGAGCGATCGAACCGAGCTCCGGATTGGAGAAATTGAAGAGCGAGAGAAGCAGCTCCGATTACGCGCTGCTACAGAAGGAGCGGAAGCAGAGTAGGAGGAAGAAGAGCGGTGAGAATGGAGCGGAAGGAATCGGCAGATCTGCTCCGGCGGTGGGCGGAAACCCTAACCCTAAGTCTCGGCGGAGTGTTGAAGCTGAAATGGTGGCGTCGGTGCCGAAATCGGGAGATGGATACACGGCGGCTTTCAATAAAGTGAAGATCGAGAAGCAAATTGCGGCTTCCAAACCTCAGGCGGTTCCTCCGCCATTGATGAATCAAACCAAACACCCCATTGCTCACACCAACACCTCTACTTCATTTGCTTCCAAGATATGTTGTTGTTTTTGTCCAAAGTGA

Protein sequence

MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPADRRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQSRRKKSGENGAEGIGRSAPAVGGNPNPKSRRSVEAEMVASVPKSGDGYTAAFNKVKIEKQIAASKPQAVPPPLMNQTKHPIAHTNTSTSFASKICCCFCPK

Homology

[Close]

BLAST of Sed0022841.1 vs. NCBI nr
Match: XP_022955116.1 (RPM1-interacting protein 4-like [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-58
Identity = 138/223 (61.88%), Postives = 154/223 (69.06%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPAD 60
           MAGAKSS HVPKFG+WDTDDVPYTICFE+A ELRAAG+TFDPNDPDTYPPE+F P A   
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVA--- 60

Query: 61  RRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQS 120
                     HDGG+H  Q++ R++P  E     +SG EKL SERS SDYALL       
Sbjct: 61  ----------HDGGEH--QRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL------- 120

Query: 121 RRKKSGENGAEGIGRSAPAVGGNPNPKSRRSVEAEMVASVPKSGDGYTAAFNKVKIEKQI 180
             KKS ENG EGI R APAV G+    +         A  PKSGDGYTA FNK+KIEKQI
Sbjct: 121 --KKSKENGVEGISRLAPAVAGHGGNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQI 180

Query: 181 AASKPQAVPPPLMNQTKHPIAHTNTS---TSFASKICCCFCPK 221
           AAS PQ+V PPLMN+TK PIAHTNT+   TSFASKICCC   K
Sbjct: 181 AASNPQSV-PPLMNKTKQPIAHTNTTSGFTSFASKICCCLRTK 198

[Close]

BLAST of Sed0022841.1 vs. NCBI nr
Match: XP_022994302.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 6.4e-58
Identity = 139/227 (61.23%), Postives = 157/227 (69.16%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPAD 60
           MAGA SS HVPKFG+WDTDDVPYTICFE+A ELRAAG+TFDPNDPDTYPPE+F P+A   
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAA--- 60

Query: 61  RRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQS 120
                     H+GG+H  Q++ R++P  E     +SG EKL SERS S+YALL       
Sbjct: 61  ----------HNGGEH--QRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALL------- 120

Query: 121 RRKKSGENGAEGIGRSAPAVGG---NPNPKSRRSVE-AEMVASVPKSGDGYTAAFNKVKI 180
             KKS ENG EGI R APAV G   NP P +    +     A  PKSGDGYTA FNK+KI
Sbjct: 121 --KKSKENGVEGISRLAPAVAGHGVNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKI 180

Query: 181 EKQIAASKPQAVPPPLMNQTKHPIAHTNTS---TSFASKICCCFCPK 221
           EKQIAAS PQAV PPLMN+TK PIAHTNT+   TSFASKICCC   K
Sbjct: 181 EKQIAASNPQAV-PPLMNKTKQPIAHTNTTSGFTSFASKICCCLRAK 202

[Close]

BLAST of Sed0022841.1 vs. NCBI nr
Match: XP_023525812.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-57
Identity = 136/223 (60.99%), Postives = 153/223 (68.61%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPAD 60
           MAGA SS HVPKFG+WDTDDVPYTICFE+A ELRAAG+ FDPNDPDTYPPE+F P+A   
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGINFDPNDPDTYPPEVFKPAA--- 60

Query: 61  RRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQS 120
                     HDGG+H  Q++ R++P  E     +SG EKL SERS SDYALL       
Sbjct: 61  ----------HDGGEH--QRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL------- 120

Query: 121 RRKKSGENGAEGIGRSAPAVGGNPNPKSRRSVEAEMVASVPKSGDGYTAAFNKVKIEKQI 180
             KKS ENG EGI R APAV G+    +         A  PKSGDGYTA FNK+KIEKQI
Sbjct: 121 --KKSKENGVEGISRLAPAVAGHGGNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQI 180

Query: 181 AASKPQAVPPPLMNQTKHPIAHTNTS---TSFASKICCCFCPK 221
           AAS PQAV PPLMN++K PIAHTNT+   TSFASKICCC   K
Sbjct: 181 AASNPQAV-PPLMNKSKQPIAHTNTTSGFTSFASKICCCLRTK 198

[Close]

BLAST of Sed0022841.1 vs. NCBI nr
Match: KAG6573489.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012628.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-55
Identity = 133/216 (61.57%), Postives = 149/216 (68.98%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPAD 60
           MAGA SS HVPKFG+WDTDDVPYTICFE+A ELRAAG+TFDPNDPDTYPPE+F P A   
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVA--- 60

Query: 61  RRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQS 120
                     HDGG+H  Q++ R++P  E     +SG EKL SERS SDYALL       
Sbjct: 61  ----------HDGGEH--QRRPRQQPNRERGAVINSGSEKLSSERSGSDYALL------- 120

Query: 121 RRKKSGENGAEGIGRSAPAVGGNPNPKSRRSVEAEMVASVPKSGDGYTAAFNKVKIEKQI 180
             KKS ENG EGI R APAV G+    +         A  PKSGDGYTA FNK+KIEKQI
Sbjct: 121 --KKSKENGVEGISRLAPAVAGHGGNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQI 180

Query: 181 AASKPQAVPPPLMNQTKHPIAHTNTS---TSFASKI 214
           AAS PQAV PPLMN+TK PIAHTNT+   TSFASK+
Sbjct: 181 AASNPQAV-PPLMNKTKQPIAHTNTTSGFTSFASKV 191

[Close]

BLAST of Sed0022841.1 vs. NCBI nr
Match: XP_038895249.1 (RPM1-interacting protein 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-54
Identity = 147/247 (59.51%), Postives = 157/247 (63.56%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPE--IFAPSAP 60
           MAGAKSSSHVPKFG+WD+DDVPYTICFE+A ELRAAG+ FDPNDPDTYPP   I   S P
Sbjct: 1   MAGAKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVDFDPNDPDTYPPAAVINQNSTP 60

Query: 61  ADRRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERK 120
           AD R           G +HQ    RR  G       +SG EKL SERS SDYALL KE K
Sbjct: 61  ADHR-----------GDYHQ----RREMG-------NSGSEKLSSERSGSDYALL-KEAK 120

Query: 121 QSRRKKSGENGAEGIGRSAPAV-------GGNPNPKSRRSVEAEMVASV----------P 180
           QS RKK   NGAEG+ R  P          GN NP+ RR+ E EM+ASV          P
Sbjct: 121 QSGRKKKHSNGAEGMSRFTPTTTVSGHGGKGNRNPRVRRNDEGEMMASVPKFGSWDVRDP 180

Query: 181 KSGDGYTAAFNKVKIEKQIAAS-KPQAVPPPLMNQTKH-PIAHTNT------STSFASKI 221
           KSGDGYTA FNKVKIEKQI  S  PQAV PPLMNQTK  PIA T T      S SF SKI
Sbjct: 181 KSGDGYTAIFNKVKIEKQIGGSNNPQAV-PPLMNQTKKLPIAQTTTTATTHGSNSFVSKI 223

[Close]

BLAST of Sed0022841.1 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-07
Identity = 64/224 (28.57%), Postives = 96/224 (42.86%), Query Frame = 0


Query: 8   SHVPKFGDWDTDD-VPYTICFEHASELRAAG-LTFDPNDPD-TYPPEIFAPSAPADRRRH 67
           S+VPKFG+W+ ++ VPYT  F+ A + RA G    +PNDP+     +  AP  P   R  
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  RVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQSRRKK 127
             Q  T    + H + +        G    SS      +E ++       +      +  
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGSS------NEAANKRQGRASQNNSYDNKSP 123

Query: 128 SGENGAEGIGRSAPAVGGNPNPKSRRSVEA-EMVASVPK----------SGDGYTAAFNK 187
             +N  +G G+S       P P + R+ E+ E V  VPK          S DGYT  FNK
Sbjct: 124 LHKNSYDGTGKS------RPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNK 183

Query: 188 VKIEKQIAASKPQAVPPPLMNQTKHPIAHTNTSTSFASKICCCF 218
           V+ E+   A+   +   P    +++P    NTS+      CCCF
Sbjct: 184 VREERSSGANVSGSSRTPTHQSSRNP---NNTSS------CCCF 206

[Close]

BLAST of Sed0022841.1 vs. ExPASy Swiss-Prot
Match: Q8S3M3 (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-04
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 8  SHVPKFGDWDTDDVPYTICFEHASELRAAG-LTFDPNDPDTYPPEIFAPSAPADRRRHRV 67
          +HVPKFG+WD +++ YT  FE     +  G   F+PNDP+   P+ F P   A   +H  
Sbjct: 5  AHVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEE-NPQAFYPRTVAQDHQHSE 64

Query: 68 QAATHDGGKHHQQQQRRRR 86
          +        +H  +Q RR+
Sbjct: 65 KHHNDTSTDYHVVKQHRRK 82

[Close]

BLAST of Sed0022841.1 vs. ExPASy TrEMBL
Match: A0A6J1GSU2 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 6.2e-59
Identity = 138/223 (61.88%), Postives = 154/223 (69.06%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPAD 60
           MAGAKSS HVPKFG+WDTDDVPYTICFE+A ELRAAG+TFDPNDPDTYPPE+F P A   
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVA--- 60

Query: 61  RRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQS 120
                     HDGG+H  Q++ R++P  E     +SG EKL SERS SDYALL       
Sbjct: 61  ----------HDGGEH--QRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL------- 120

Query: 121 RRKKSGENGAEGIGRSAPAVGGNPNPKSRRSVEAEMVASVPKSGDGYTAAFNKVKIEKQI 180
             KKS ENG EGI R APAV G+    +         A  PKSGDGYTA FNK+KIEKQI
Sbjct: 121 --KKSKENGVEGISRLAPAVAGHGGNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQI 180

Query: 181 AASKPQAVPPPLMNQTKHPIAHTNTS---TSFASKICCCFCPK 221
           AAS PQ+V PPLMN+TK PIAHTNT+   TSFASKICCC   K
Sbjct: 181 AASNPQSV-PPLMNKTKQPIAHTNTTSGFTSFASKICCCLRTK 198

[Close]

BLAST of Sed0022841.1 vs. ExPASy TrEMBL
Match: A0A6J1JVE9 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 3.1e-58
Identity = 139/227 (61.23%), Postives = 157/227 (69.16%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAPSAPAD 60
           MAGA SS HVPKFG+WDTDDVPYTICFE+A ELRAAG+TFDPNDPDTYPPE+F P+A   
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAA--- 60

Query: 61  RRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQS 120
                     H+GG+H  Q++ R++P  E     +SG EKL SERS S+YALL       
Sbjct: 61  ----------HNGGEH--QRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALL------- 120

Query: 121 RRKKSGENGAEGIGRSAPAVGG---NPNPKSRRSVE-AEMVASVPKSGDGYTAAFNKVKI 180
             KKS ENG EGI R APAV G   NP P +    +     A  PKSGDGYTA FNK+KI
Sbjct: 121 --KKSKENGVEGISRLAPAVAGHGVNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKI 180

Query: 181 EKQIAASKPQAVPPPLMNQTKHPIAHTNTS---TSFASKICCCFCPK 221
           EKQIAAS PQAV PPLMN+TK PIAHTNT+   TSFASKICCC   K
Sbjct: 181 EKQIAASNPQAV-PPLMNKTKQPIAHTNTTSGFTSFASKICCCLRAK 202

[Close]

BLAST of Sed0022841.1 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 138/241 (57.26%), Postives = 156/241 (64.73%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFA--PSAP 60
           MAG KSSSHVPKFG+WD+DDVPYTI FE+A EL+AAG+TFDPNDPDTYPP +FA   S P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ADRRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERK 120
           AD  RH      HDG   HQ+++             +SG EKL SERS SDYALL  + K
Sbjct: 61  ADHHRH------HDGEDSHQRRE-----------IVNSGSEKLSSERSDSDYALL--KAK 120

Query: 121 QSRRKKSGENGAEGIGRSAPAV---GGNPNPKSRRSVEAEMVASV----------PKSGD 180
           QS RKK   NGAEG+ R +P      GN NP+ RR+ E EM+ASV          PKSGD
Sbjct: 121 QSGRKKKNSNGAEGMSRFSPTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGD 180

Query: 181 GYTAAFNKVKIEKQIAASKPQAVPPPLMNQTKHP-----IAHTNT--STSFASKICCCFC 220
           GYTA FNKVKIEKQI  S      PPLMNQTK P     +A T+T  STSF SKICCC  
Sbjct: 181 GYTAIFNKVKIEKQIGGSNNPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKICCCLG 222

[Close]

BLAST of Sed0022841.1 vs. ExPASy TrEMBL
Match: A0A0A0M0M0 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 134/242 (55.37%), Postives = 153/242 (63.22%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFA--PSAP 60
           MAG KSSSHVPKFG+WD+DDVPYTI FE+A EL+AAG+TFDPNDPDTYPP   A   S+P
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ADRRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERK 120
           A+  R+      HDG   HQ+++             +SG EKL SERS SDYALL  + K
Sbjct: 61  ANHHRY------HDGDDSHQRRE-----------IVNSGSEKLSSERSDSDYALL--KAK 120

Query: 121 QSRRKKSGENGAEGIGRSAPAV---GGNPNPKSRRSVEAEMVASV----------PKSGD 180
           QS RKK   NGAEG+ R +PA     GN NP+ RR+ E EM+ASV          PKSGD
Sbjct: 121 QSGRKKKNSNGAEGMSRFSPATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGD 180

Query: 181 GYTAAFNKVKIEKQIAASKPQAVPPPLMNQTKHPIAHTNT-------STSFASKICCCFC 221
           GYTA FNKVKIEKQ+  S      P LMNQTK PI  T         STSF SKICCC  
Sbjct: 181 GYTAIFNKVKIEKQVGGSNDTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKICCCLY 223

[Close]

BLAST of Sed0022841.1 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 5.6e-52
Identity = 133/238 (55.88%), Postives = 152/238 (63.87%), Query Frame = 0


Query: 4   AKSSSHVPKFGDWDTDDVPYTICFEHASELRAAGLTFDPNDPDTYPPEIFAP----SAPA 63
           AKSSSHVPKFG+WDTDDVPYTICFE+A ELRAAG+TFDPNDPDTYPPE F      S P+
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  DRRRHRVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQ 123
           DRRRH      HD  +  ++Q  R R         SSG EKL SERS SDY+LL   ++ 
Sbjct: 63  DRRRH------HDHHRRPREQPNRDR--------RSSGSEKLSSERSGSDYSLL---KEP 122

Query: 124 SRRKKSGENGAEGIGRSAPAVGG-----NPNPKSRRSVEAEMVASV----------PKSG 183
             R+K   NG +GI R  P   G     NPNP++RR+ E EMVASV          PKSG
Sbjct: 123 GGRRKKINNGVDGISRFPPTAAGHGGNPNPNPRARRN-EGEMVASVPKFGSWDARDPKSG 182

Query: 184 DGYTAAFNKVKIEKQIAASKPQAVPPPLMNQTK-HPIAH-TNTSTSFASKICCCFCPK 221
           DGYTA FNKVK+EK+I  S      PPL NQTK  PI    + STSF SK+CCC CPK
Sbjct: 183 DGYTAIFNKVKMEKKIGGSNSSQAVPPLTNQTKQQPIPQIVHGSTSFVSKVCCCLCPK 222

[Close]

BLAST of Sed0022841.1 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-08
Identity = 64/224 (28.57%), Postives = 96/224 (42.86%), Query Frame = 0


Query: 8   SHVPKFGDWDTDD-VPYTICFEHASELRAAG-LTFDPNDPD-TYPPEIFAPSAPADRRRH 67
           S+VPKFG+W+ ++ VPYT  F+ A + RA G    +PNDP+     +  AP  P   R  
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  RVQAATHDGGKHHQQQQRRRRPGAEGAIEPSSGLEKLKSERSSSDYALLQKERKQSRRKK 127
             Q  T    + H + +        G    SS      +E ++       +      +  
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGSS------NEAANKRQGRASQNNSYDNKSP 123

Query: 128 SGENGAEGIGRSAPAVGGNPNPKSRRSVEA-EMVASVPK----------SGDGYTAAFNK 187
             +N  +G G+S       P P + R+ E+ E V  VPK          S DGYT  FNK
Sbjct: 124 LHKNSYDGTGKS------RPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNK 183

Query: 188 VKIEKQIAASKPQAVPPPLMNQTKHPIAHTNTSTSFASKICCCF 218
           V+ E+   A+   +   P    +++P    NTS+      CCCF
Sbjct: 184 VREERSSGANVSGSSRTPTHQSSRNP---NNTSS------CCCF 206

The following BLAST results are available for this feature:

BLAST of Sed0022841.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955116.1	1.3e-58	61.88	RPM1-interacting protein 4-like [Cucurbita moschata]	[more]
XP_022994302.1	6.4e-58	61.23	RPM1-interacting protein 4-like [Cucurbita maxima]	[more]
XP_023525812.1	1.1e-57	60.99	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6573489.1	1.3e-55	61.57	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_038895249.1	3.3e-54	59.51	RPM1-interacting protein 4-like isoform X2 [Benincasa hispida]	[more]

BLAST of Sed0022841.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	3.1e-07	28.57	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
Q8S3M3	2.5e-04	34.18	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1	[more]

BLAST of Sed0022841.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSU2	6.2e-59	61.88	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE...	[more]
A0A6J1JVE9	3.1e-58	61.23	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4...	[more]
A0A1S3C9P5	2.7e-54	57.26	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=...	[more]
A0A0A0M0M0	1.9e-52	55.37	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G69...	[more]
A0A6J1CND0	5.6e-52	55.88	RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 P...	[more]

BLAST of Sed0022841.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	2.2e-08	28.57	RPM1 interacting protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..76
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 5..219
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 5..219

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022841	Sed0022841	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022841.1-cds	Sed0022841.1-cds-LG08:33717491..33717517	CDS
Sed0022841.1-cds	Sed0022841.1-cds-LG08:33718819..33719448	CDS
Sed0022841.1-cds	Sed0022841.1-cds-LG08:33720108..33720113	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022841.1-exon	Sed0022841.1-exon-LG08:33717491..33717517	exon
Sed0022841.1-exon	Sed0022841.1-exon-LG08:33718819..33719448	exon
Sed0022841.1-exon	Sed0022841.1-exon-LG08:33720108..33720113	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022841.1	Sed0022841.1-protein	polypeptide