Sed0016985.2 (mRNA) Chayote v1

Overview


Name	Sed0016985.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG11: 2944621 .. 2950322 (+)
Sequence length	925
RNA-Seq Expression	Sed0016985.2
Synteny	Sed0016985.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCACATGTCGGAAAGGCCCGTGGAATTGCAGAGCTCTGCGGCAATGGAGATGGAGACGAGCAGTTCTTGTCACGAGGATGCGAACCCTTGTCCGATCTGTCTCGGCGCCATAACCCAACCTTCCTACCTCGACAAATGCTTCCGTAAGACACTTTTTCTCTCTCTCAATCGGTTCATTCTTCTTCGTTTTCTTGAATTTTCCGGTCATGAAACCGATGATATTTGGAAATATTGTACGAATTAGGGTTTTTGTTTTCCGTAATCTTAGAGTGGCTCACTTGGAATGATCCATCGAAAGAATCACTCTGTTGTCGATTTAGGGGATTTCAGGTTCTAGGGCTTAGCTCAATTATTTAGGTTTCTGCCACTGTTCTGTATTCGATGGATGAAATTGTTTGATCATTGCAGTATGTTGAAATATAGAATCAATCAACTGGTTTCATTTGGGATAAACATAAATATTGTAATCTACCTTTTTTTTTTTTTTTTAAATAAGGGTAACCATGCCTAAGTCTCGAACCCGAGACATCGAAGAAATAATGTCACAGGTGAGTCTCGAACTCGAGATCTTGAGTGGAGTATACCCTTAATGCCTAAGTCTTCAACTACTACCCCACCCCTTGGAGACTAATTCCCGAGCTTTTAGTAAATAGAAAGTTCTCTTAGAAATTTTCAGTTTGGTTTGATTCTTAATTCTTTTAGCCTTTTAAGCTTGAGGAAAACTAATTCTTACATCTTATATCATGGCATCTTCTTTTTCTTCTTTAAGGAAAACAGAAACAGCACCCACATTGCTTTCTTTGATATATTGAATGCACTCATGGATAGATTCTGTTACTGTCTTTGAGATGAATATAAGTATAACCATTTATTTTGTTTTTAATTTACTCTCTTTTAACGCCAACAAGAGTAATATTTCAATTGGTATAAATGTGTGCCCATTACCGAGGTCATGAGTTTGAGTCCTCCTATTCCCATTTTTTGTTTAACTAAAAAAAAGGATATTTTATTTATACTTGAATAATAATTTTAATTATGTTGCTCGAAAAAACCATCATGAGTCAATAAGAGACTTTAAAATTGTAAAGTGCTTAGAGAGATCAGTTGTTACATTAGATTAGTTGAGGATGAGGTGCATGTAAGCTTGCTCAAACACTCACACTCACGAATAAAAAGAAATTGTGTTGCTCAAAAATTGGGTTATTGAAGTGAAAGAGTAAATATCACATATCTTTAGTTTTTACTTTGGTATCATGTTAATCGTATGTAATTTCAATAGTTTAAACCTTACAGTTACAGTTTGGGTGAATTTGATCATTTAATTAATTCTATTGATGAGTTATATTGAGTAGTTAAAAATTGAGAGTTGTGCCAAAAACTCGTTAGTTTTTTTATAGAGGAGTTATAGTCAAAACTTTGTTTGGATGTAAATTTAAAAATGAGTAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGAGTTGTTAAAAATAAGCTAGCTATTTTGATTGATTTGAAAAGAATAATTAAAAATGAGTGGTTAGAAATGATTGAGTAGTTATAAATGAATGATTAAAAATGAATGGTTAGAAATGAGAGTTATTTTCAAAAGTAAAATTGAGGAGGAGTTGGTAAAAACTCGTTTGGATGTAGGTTTTAGAGGAGAAGTTACTAAATCCTAAACCTAACTCCTAGCTAAAAACGTCAAACAAACAGCCCCTAAAGATTTTATTCGTTCATTCATGTTGACTACAATATAGTATTTAGAAAAAAAGGAAAGTCAACAAACTTTGTTGAGAAGCTTGAATTCTATTTCTGTCTTGCAGATAAATTTTGTTACAATTGCATTGTACAATGGACCAAGGTGGTTTCTGGGAAGCGCACTTGTACGCTTTCATCCATCAAGTGTCCTTTATGCAAGGTTTTACTTTCCTTCCCCTGTTAACTTGTTTTCCTTAACCGTCCATACTTTTTGTATTGGATTTTTTATATTTTATATTTAATCATCAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACATTGTTTTCAAAGGCATTATGTTAATCAAAATTTTCAGGATAGGTATCTTCTTGTCAATACTTCCCCTACGTTTTCTATTCCTATTTTCTCTTCCTTGATTGACTATGCTTTATAATTGATGTTATTTGCAGCTTTGTCTTATCGAAAGCTCACAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTAGTTTTCTGTTTATCATTGGAATCATTATGTGGATGTTTGATGGTCCAACATTTATATCATGGTGATTTGGATTTATTAGCTCCGTTTGATAACCATATGGTTTTAAGCTTTCGGTTTATGAGAATTATGCTTATAATACACTACTTCACCTTTGAGATTATTTTGTCATCTACATTCAATATTTTCAAAAATCAAGACAAGCTAAAAATACAGTATTTAAAATAATTTGTTGGGGATTTTGCATGTATAATAAAAAAAGGCAAAGTATTTCCATCTACAGTACAAAATCACAACTAATTCATTTGTAACAAAAAATTCAAATTGAATTTTATCACTGATTGAGTTTTATTAGTGATAGAATTCAATCAATGATAGACATATTCTATCACTGTTTGAGTTTTCTATCAGTGATAGATCACTGGTTGAATTTTATCATTGATAGAAATGAATGTGTTGTAGATGAATTATTTCAGAAATTGTGCTGCAAATATAATACGAGTGGGAGAATGTGATGTTGATGGTAAATTCTCTACTTTGTTTGTTTTAATTAATTTGAATAAGAAATTATATGTATCTTTGAAAAATGTGAAAACTATTTTAAAGAATTTAAGAAGAAATATGCATAAATTTTAGGAACAGAAAGCTAAAAACAAAATTGTTATTAAATGAGACTTAACTTTCCGTAGTTATTTACATGTAGGTTTCTTGGATGACGTATTCAATGTACAAAGACATTGGAAGTTACGAAAGTATCTCCAGGAAAACCAATGGCTTGCAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTCGTTTCACATTTATACTTCTACAAGATACTGCTTCCTTTGGCCTCTTTTTTCTCTAGGATAATGTTTAATATCCACCTAGTAGTTAATGAAATTTTTAATTCCAAAATGTCCTCTGTGTCGAATAATGAAAATCGGACACTGACACGGAAAAAGGAAGTAGAGGCGTGGGGTTTCTCTCATTTATGGCATAGTGGCCTCTACAGAGGGCTAATCTGTTGATTGAGGTTTTTTGAAAAATCTGTTGAAAAGAGTAAAACTCCTCTACACATGAATGTGAAGAGGAACTCTGCATTTTACTTATGTGGCACATTGGTGCCACAAAAAATTATACGCATTTTGATATCTTCATTTATCAAATAATTGTTTGTGGCATTCAATCATGCCACATAAGCAAAAAGTAGAGCTCTCTTACACACTCATATGGGTTTTGTGATTATGGAAAGTAGGCAAGTTGAGTTACAGATATGCCTGTTGTTCCCTTTACTATAACTGTGGGAATAGTGCATTCATCACTCACACCATTTAGTAGAGAAGGCATTACTGTAGACAAAACAGGATAGCAGAAATAGATGTATGATGTATGATACCGTTTCTATGGCGTAGTTTCTTGATTTCTCCATTGTATTTATATGCAGTACATAGATCCTTGAGCATGATGACTGATAATGTCAACTACCATTTTACAGGAAGAGGATGTTGACATAATTATGCACCACCTACTTGGTTTAATTAATCCATTTTTTAGTAGGTAATAACCATCACTTACTGCGTTCTAAACTGCTATCAAATACAAAAAGGTTAATTTACAAATTCCATTCCTTTGATTTGGATAAAGTTGAAATTTAGACCTATGGTTTTACAAGTTAGAATTCATCTCTATTGCTTGATAAAAACCCTTCTAAATAGTTCTCAGGTACTAGAAACTATTTAGAATGATTGTACCGTACACTGAGGGGGCTATATTTATAAGGACGAAATTCTAACCAGTGTTTTCAAAGTGTAAGGCGCAATGCAAGGCGATACTCTCCTTGATCGGCTCAAAGCGAGAGGTTATAAAAAGGCGAGGCCCGAGTGAAAAGAGGCGCGTTTATAAATTGATAATAAAACATATGTGTATTCCCATAAAATTTCAAATTCATATGAAAAAATACTAAAAAGTAAAAAATAAAAGAATAATAAATCACAAAAATTATGTTATTATAAGTTATACCATAATATTAAATTATTATTTGTAAAAAGAATTGAAGTTAACTGAAAGTATAAAAAAACAAAGATTCTACGTCAAATAACTCGAATAAACAGACACATATATTTGAAATAGCAATTAAACAAATTTAGTATCCTTAATAAAAACTTCGCATAGTTGTTGGTCTTCTTCATAAACAAATTCTAGGTTCTTTTTGTGGATATTAAGTTAGGATATTGATAAATAAATAAAACTTTAACAAGGCGCACGCCTTGGCTTAAGGTGAAGGTGATGCAAGGCGTAAAATGGCGAGGAAAGGCGAGGGCCTGATCGAAGGAGCTCACCTTAGTTACGTTAGAGGCGCAATACCTGCCTATGTGCAAGGCGATGGCCATAGGCGAGGAAAGGCGATGGCCTTGAAAACACTGATTCTAACTTTAAATCATATAACTAAATTCTAACTTTCTTCAACCTATAGCTCAAATGGCATAAGTGTACACCTAGTGACCTTGAGGTCATAGGTTCAATTCCGCCACCCCAAATGTTGTATCCTAAAAAAAAACTTTCTTCAAACTAGGTGTATCATATAAAAAAGATTGGCCGCCCCGAGCCACTCGTGGCCCCATATATCGATCATCAAATGTCTTTTTTTTATGCTTTTCATTTTGGTTTGCCAGGTAGATGTTAGGGCCTGAACCACGGTTTTATTTATCAACCCAATACAACGAAGGAAACTTTTGAGAGCTTCCTCACTCTCCCACTCTCACTAGAGAGTTGCAGAAAATCAAAGCCAGAAAGATAACTCCTCTACGGACAACTCGCCCCTAGAGCCCGGTCACATACCTACAGGTCCCACAAACAAAACATGGTGACGGCATCAATCCTCAAACGACTCTCCCTTTTCTCACATGCTTATCTTCATTCACTTAGTGATTCGAGGCCTGTCAGTAAAATTTGTTGAACACATTCATTTTTACTCATTTCTCTGTCTCTTACCTATCTACATGAATGTAAATATGCATGATACCTGATTACACTCTGAAACCTGCTTCTTGTTCTCTCTGTTTTTTCTGAAGAAAGGAACCTAGGTATCAATCAGAAACTCCTCACTCGAAGCGGGAAAGGTTTAACAGCATGGTTTGTGATGCAGCAAAGCCATTCCTGTCGGCAAGAACAAACCGGTTCGTGCTCGAGTTGGAACTGTTTCTTGCTTCAGGTTTAAACATTGAAGCGTATGATTCGGTTTATTTGCAACGGTTGGGTTGGAGTGAGCCTGTAGTGCCCAGTGTGGCCATCAAAGAAGATGTTGGTCTCAAACCTGTAACTCCATACTTGTATATCTTTGACTATGACCCTGATGATGATGATGATTGAAAAAGTTGGAATTTGAATATAAATTTTCATTTGGAGTATTGGTAGATCTTTCATTGGAACATGTTAAGTTTGTTTGCTG

mRNA sequence

AAACCACATGTCGGAAAGGCCCGTGGAATTGCAGAGCTCTGCGGCAATGGAGATGGAGACGAGCAGTTCTTGTCACGAGGATGCGAACCCTTGTCCGATCTGTCTCGGCGCCATAACCCAACCTTCCTACCTCGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTACAATGGACCAAGGTGGTTTCTGGGAAGCGCACTTGTACGCTTTCATCCATCAAGTGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACATTGTTTTCAAAGGCATTATGTTAATCAAAATTTTCAGGATAGCTTTGTCTTATCGAAAGCTCACAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGGATGACGTATTCAATGTACAAAGACATTGGAAGTTACGAAAGTATCTCCAGGAAAACCAATGGCTTGCAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAGGATGTTGACATAATTATGCACCACCTACTTGGTTTAATTAATCCATTTTTTAGTAGGAACCTAGGTATCAATCAGAAACTCCTCACTCGAAGCGGGAAAGGTTTAACAGCATGGTTTGTGATGCAGCAAAGCCATTCCTGTCGGCAAGAACAAACCGGTTCGTGCTCGAGTTGGAACTGTTTCTTGCTTCAGGTTTAAACATTGAAGCGTATGATTCGGTTTATTTGCAACGGTTGGGTTGGAGTGAGCCTGTAGTGCCCAGTGTGGCCATCAAAGAAGATGTTGGTCTCAAACCTGTAACTCCATACTTGTATATCTTTGACTATGACCCTGATGATGATGATGATTGAAAAAGTTGGAATTTGAATATAAATTTTCATTTGGAGTATTGGTAGATCTTTCATTGGAACATGTTAAGTTTGTTTGCTG

Coding sequence (CDS)

ATGTCGGAAAGGCCCGTGGAATTGCAGAGCTCTGCGGCAATGGAGATGGAGACGAGCAGTTCTTGTCACGAGGATGCGAACCCTTGTCCGATCTGTCTCGGCGCCATAACCCAACCTTCCTACCTCGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTACAATGGACCAAGGTGGTTTCTGGGAAGCGCACTTGTACGCTTTCATCCATCAAGTGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACATTGTTTTCAAAGGCATTATGTTAATCAAAATTTTCAGGATAGCTTTGTCTTATCGAAAGCTCACAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGGATGACGTATTCAATGTACAAAGACATTGGAAGTTACGAAAGTATCTCCAGGAAAACCAATGGCTTGCAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAGGATGTTGACATAATTATGCACCACCTACTTGGTTTAATTAATCCATTTTTTAGTAGGAACCTAGGTATCAATCAGAAACTCCTCACTCGAAGCGGGAAAGGTTTAACAGCATGGTTTGTGATGCAGCAAAGCCATTCCTGTCGGCAAGAACAAACCGGTTCGTGCTCGAGTTGGAACTGTTTCTTGCTTCAGGTTTAA

Protein sequence

MSERPVELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGFLDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRNLGINQKLLTRSGKGLTAWFVMQQSHSCRQEQTGSCSSWNCFLLQV

Homology

[Close]

BLAST of Sed0016985.2 vs. NCBI nr
Match: XP_022150768.1 (uncharacterized protein LOC111018833 [Momordica charantia])

HSP 1 Score: 348.2 bits (892), Expect = 5.4e-92
Identity = 163/194 (84.02%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MSERPVELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKV 60
           MSE  +ELQS+A  EMET+SS ++D NPCPICLG+I +PSYLDKCFHKFCYNCIVQWTKV
Sbjct: 1   MSESAMELQSTAQKEMETASSSYDDTNPCPICLGSIIRPSYLDKCFHKFCYNCIVQWTKV 60

Query: 61  VSGKRTCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYY 120
           VSGKR+C LS IKCPLCKTESSSIIHGLDGHCFQRHYVNQ+FQDSF+LSKAHKYRLQCYY
Sbjct: 61  VSGKRSCILSPIKCPLCKTESSSIIHGLDGHCFQRHYVNQDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180
           TEPGFL+D+FNVQR+WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLGLINPFF
Sbjct: 121 TEPGFLEDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180

Query: 181 SRNLGINQKLLTRS 195
           SRN    QK  T S
Sbjct: 181 SRN---EQKYQTES 191

[Close]

BLAST of Sed0016985.2 vs. NCBI nr
Match: XP_038889020.1 (uncharacterized protein LOC120078783 isoform X1 [Benincasa hispida])

HSP 1 Score: 337.8 bits (865), Expect = 7.2e-89
Identity = 155/183 (84.70%), Postives = 167/183 (91.26%), Query Frame = 0


Query: 1   MSERPVELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKV 60
           MSER +ELQS+A +E  TSSS  +D NPCPICLG I QPSYLDKCFHKFCYNCI+QWTKV
Sbjct: 1   MSERAMELQSTAPVETATSSSFSDDTNPCPICLGLIIQPSYLDKCFHKFCYNCILQWTKV 60

Query: 61  VSGKRTCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYY 120
           VSGK +C LSSIKCPLCKTESSSIIHGLDGHC QRHYVN++FQDSF+LSKAHKYRLQCYY
Sbjct: 61  VSGKHSCMLSSIKCPLCKTESSSIIHGLDGHCLQRHYVNRDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180
           TEPGFLDD+FNVQR+WKLRKYLQ NQWL VWLKRELQALIQEED+DIIMHHLLG IN FF
Sbjct: 121 TEPGFLDDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDIDIIMHHLLGFINSFF 180

Query: 181 SRN 184
           SRN
Sbjct: 181 SRN 183

[Close]

BLAST of Sed0016985.2 vs. NCBI nr
Match: XP_022999126.1 (uncharacterized protein LOC111493604 [Cucurbita maxima])

HSP 1 Score: 334.3 bits (856), Expect = 8.0e-88
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 6   VELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKR 65
           +ELQ +A +EMETSSS  +D NPCPICLG I QPSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 66  TCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGF 125
           +CTLSSIKCPLCKTES SIIHGLDGHCFQRHYVNQ+FQDSF+LSKA KYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 126 LDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRN 184
           LDD+FNVQ++WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLG I+ FFSRN
Sbjct: 121 LDDIFNVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRN 178

[Close]

BLAST of Sed0016985.2 vs. NCBI nr
Match: XP_022946760.1 (uncharacterized protein LOC111450733 [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-87
Identity = 152/178 (85.39%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 6   VELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKR 65
           +ELQ +A +EMETSSS  +D NPCPICLG I QPSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 66  TCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGF 125
           +CTLSSIKCPLCKTES SIIHGLDGHCFQRHYVNQ+FQDSF+LSKA KYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 126 LDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRN 184
           LDD+F+VQ++WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLG I+ FFSRN
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRN 178

[Close]

BLAST of Sed0016985.2 vs. NCBI nr
Match: XP_023545827.1 (uncharacterized protein LOC111805146 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-87
Identity = 152/178 (85.39%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 6   VELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKR 65
           +ELQ +A +EMETSSS  +D NPCPICLG I QPSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 66  TCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGF 125
           +CTLSSIKCPLCKTES SIIHGLDGHCFQRHYVNQ+FQDSF+LSKA KYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 126 LDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRN 184
           LDD+F+VQ++WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLG I+ FFSRN
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRN 178

[Close]

BLAST of Sed0016985.2 vs. ExPASy Swiss-Prot
Match: Q80Z37 (E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 33/101 (32.67%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 25  DANP---CPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLCKTES 84
           DA+P   CPICL      SYLD+C HKFC+ C+ +W+K          +  +CPLCK   
Sbjct: 97  DASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPF 156

Query: 85  SSIIHGLDGH-CFQRHYVNQNFQDSFVLSKAHKYRLQCYYT 122
            SI H +     F+ + +  ++  SF   +  ++R +   T
Sbjct: 157 DSIFHSVRAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMT 187

[Close]

BLAST of Sed0016985.2 vs. ExPASy Swiss-Prot
Match: Q9NS56 (E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-10
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 25  DANP---CPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLCKTES 84
           DA+P   CPICL      SYLD+C HKFC+ C+ +W+K          +  +CPLCK   
Sbjct: 96  DASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------NKAECPLCKQPF 155

Query: 85  SSIIHGLDGH-CFQRHYVNQNFQDSFVL-SKAHKYR 116
            SI H +     F+ + +  ++  SFV   +  +YR
Sbjct: 156 DSIFHSVRAEDDFKEYVLRPSYNGSFVTPDRRFRYR 181

[Close]

BLAST of Sed0016985.2 vs. ExPASy Swiss-Prot
Match: P29129 (E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) OX=31523 GN=EP0 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.7e-06
Identity = 24/61 (39.34%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 29 CPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLCKTESSSIIHGL 88
          CPICL      +    C HKFC +CI +W          TL+S  CPLC    +SI+H +
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRW----------TLTSTACPLCNARVTSILHHV 96

Query: 89 D 90
          D
Sbjct: 106 D 96

[Close]

BLAST of Sed0016985.2 vs. ExPASy Swiss-Prot
Match: Q9E1W2 (E3 ubiquitin-protein ligase IE61 OS=Cercopithecine herpesvirus 9 (strain DHV) OX=36348 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-05
Identity = 28/80 (35.00%), Postives = 36/80 (45.00%), Query Frame = 0


Query: 18 TSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLC 77
          TS S     N C IC+ AI+       C H FC+ CI  WT           +S +CPLC
Sbjct: 9  TSGSVASTGN-CAICMSAISGLGKTLPCLHDFCFVCIQTWTS----------TSAQCPLC 68

Query: 78 KTESSSIIHGLDGHCFQRHY 98
          +T  SSI+H +        Y
Sbjct: 69 RTVVSSILHNITSDANYEEY 77

[Close]

BLAST of Sed0016985.2 vs. ExPASy TrEMBL
Match: A0A6J1DAB4 (uncharacterized protein LOC111018833 OS=Momordica charantia OX=3673 GN=LOC111018833 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.6e-92
Identity = 163/194 (84.02%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MSERPVELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKV 60
           MSE  +ELQS+A  EMET+SS ++D NPCPICLG+I +PSYLDKCFHKFCYNCIVQWTKV
Sbjct: 1   MSESAMELQSTAQKEMETASSSYDDTNPCPICLGSIIRPSYLDKCFHKFCYNCIVQWTKV 60

Query: 61  VSGKRTCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYY 120
           VSGKR+C LS IKCPLCKTESSSIIHGLDGHCFQRHYVNQ+FQDSF+LSKAHKYRLQCYY
Sbjct: 61  VSGKRSCILSPIKCPLCKTESSSIIHGLDGHCFQRHYVNQDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180
           TEPGFL+D+FNVQR+WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLGLINPFF
Sbjct: 121 TEPGFLEDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180

Query: 181 SRNLGINQKLLTRS 195
           SRN    QK  T S
Sbjct: 181 SRN---EQKYQTES 191

[Close]

BLAST of Sed0016985.2 vs. ExPASy TrEMBL
Match: A0A6J1KC78 (uncharacterized protein LOC111493604 OS=Cucurbita maxima OX=3661 GN=LOC111493604 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.9e-88
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 6   VELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKR 65
           +ELQ +A +EMETSSS  +D NPCPICLG I QPSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 66  TCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGF 125
           +CTLSSIKCPLCKTES SIIHGLDGHCFQRHYVNQ+FQDSF+LSKA KYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 126 LDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRN 184
           LDD+FNVQ++WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLG I+ FFSRN
Sbjct: 121 LDDIFNVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRN 178

[Close]

BLAST of Sed0016985.2 vs. ExPASy TrEMBL
Match: A0A6J1G4Z2 (uncharacterized protein LOC111450733 OS=Cucurbita moschata OX=3662 GN=LOC111450733 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.5e-87
Identity = 152/178 (85.39%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 6   VELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKR 65
           +ELQ +A +EMETSSS  +D NPCPICLG I QPSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 66  TCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGF 125
           +CTLSSIKCPLCKTES SIIHGLDGHCFQRHYVNQ+FQDSF+LSKA KYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 126 LDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRN 184
           LDD+F+VQ++WKLRKYLQ NQWL VWLKRELQALIQEEDVDIIMHHLLG I+ FFSRN
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRN 178

[Close]

BLAST of Sed0016985.2 vs. ExPASy TrEMBL
Match: A0A0A0LLN5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.0e-85
Identity = 150/183 (81.97%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MSERPVELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKV 60
           MS + +ELQS+A+MEMET +S  +  NPCPICLG I Q SYLDKCFH FCYNCIVQWTKV
Sbjct: 1   MSGKSMELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRTCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYY 120
           VSGKR+CTLSSIKCPLCKTESSSIIHGLDGH FQRHYVN +FQDSF+LSKAH+YRLQCYY
Sbjct: 61  VSGKRSCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYY 120

Query: 121 TEPGFLDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180
           TEPGFL+D+F+VQR+WKL+KYLQ NQWL VWLKRELQALIQEEDVDIIMHH LGLIN FF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFF 180

Query: 181 SRN 184
            RN
Sbjct: 181 RRN 183

[Close]

BLAST of Sed0016985.2 vs. ExPASy TrEMBL
Match: A0A5D3D454 (RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00310 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.6e-84
Identity = 148/183 (80.87%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MSERPVELQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKV 60
           MSE+ +ELQS+A+ME++TS+S  +  +PCPICLG I Q SYLDKCFH FCYNCIVQWTKV
Sbjct: 1   MSEKSMELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKV 60

Query: 61  VSGKRTCTLSSIKCPLCKTESSSIIHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYY 120
           VSGKR+C LSSIKCPLCKTESSSIIHGLDGH FQRHYVN +FQDSF+LSKAHKYRLQCYY
Sbjct: 61  VSGKRSCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYY 120

Query: 121 TEPGFLDDVFNVQRHWKLRKYLQENQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFF 180
           TEPGFL+D+F+VQR+WKL+KYLQ NQWL VWLKRELQALIQEEDVDIIMHH +GLIN FF
Sbjct: 121 TEPGFLNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFF 180

Query: 181 SRN 184
            RN
Sbjct: 181 RRN 183

[Close]

BLAST of Sed0016985.2 vs. TAIR 10
Match: AT3G05250.1 (RING/U-box superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 4.1e-58
Identity = 103/172 (59.88%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 25  DANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLCKTESSSI 84
           D +PCPICLG   + SYLD CFHKFC+NCI QW KVVS K +   SS+ CPLCKTE+ SI
Sbjct: 18  DFDPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSI 77

Query: 85  IHGLDGHCFQRHYVNQNFQDSFVLSKAHKYRLQCYYTEPGFLDDVFNVQRHWKLRKYLQE 144
           IH  DG  F+RHY++ N  D FVL+K  +YRLQCYYTE GFL DVF+V R WKL+K+LQ 
Sbjct: 78  IHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFWKLQKFLQP 137

Query: 145 NQWLAVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRNLGINQKLLTRSGK 197
           N+ L  WL+RELQAL+QEEDVDI++HHL+G++  F  R +   +K  TRS +
Sbjct: 138 NRCLEAWLRRELQALMQEEDVDIVLHHLVGVMESFCKR-IKQRRKQETRSAE 188

[Close]

BLAST of Sed0016985.2 vs. TAIR 10
Match: AT4G10940.1 (RING/U-box protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.0e-04
Identity = 22/73 (30.14%), Postives = 33/73 (45.21%), Query Frame = 0


Query: 8  LQSSAAMEMETSSSCHEDANPCPICLGAITQPSYLDKCFHKFCYNCIVQWTKVVSGKRTC 67
          L    A+E+E +     +   C IC+  I     LD C H FC+ CI  W+ +++     
Sbjct: 10 LVEDEAVEVEHNGMTEIEGERCGICMDIIIDRGVLDCCQHWFCFECIDNWSTIMN----- 69

Query: 68 TLSSIKCPLCKTE 81
                CPLC+ E
Sbjct: 70 -----LCPLCQRE 72

[Close]

BLAST of Sed0016985.2 vs. TAIR 10
Match: AT3G05670.1 (RING/U-box protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.4e-04
Identity = 23/61 (37.70%), Postives = 29/61 (47.54%), Query Frame = 0


Query: 27  NPCPICLGAITQ---PSYLDKCFHKFCYNCIVQWTKVVSGKRTCTLSSIKCPLCKTESSS 85
           N C ICL           LD C H FC+ CI++W+KV S          +CPLCK    +
Sbjct: 411 NVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVES----------RCPLCKQRFRT 461

The following BLAST results are available for this feature:

BLAST of Sed0016985.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150768.1	5.4e-92	84.02	uncharacterized protein LOC111018833 [Momordica charantia]	[more]
XP_038889020.1	7.2e-89	84.70	uncharacterized protein LOC120078783 isoform X1 [Benincasa hispida]	[more]
XP_022999126.1	8.0e-88	85.96	uncharacterized protein LOC111493604 [Cucurbita maxima]	[more]
XP_022946760.1	3.0e-87	85.39	uncharacterized protein LOC111450733 [Cucurbita moschata]	[more]
XP_023545827.1	3.0e-87	85.39	uncharacterized protein LOC111805146 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0016985.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80Z37	1.8e-10	32.67	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1	[more]
Q9NS56	4.1e-10	35.42	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1	[more]
P29129	4.7e-06	39.34	E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhause...	[more]
Q9E1W2	3.0e-05	35.00	E3 ubiquitin-protein ligase IE61 OS=Cercopithecine herpesvirus 9 (strain DHV) OX...	[more]

BLAST of Sed0016985.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAB4	2.6e-92	84.02	uncharacterized protein LOC111018833 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1KC78	3.9e-88	85.96	uncharacterized protein LOC111493604 OS=Cucurbita maxima OX=3661 GN=LOC111493604...	[more]
A0A6J1G4Z2	1.5e-87	85.39	uncharacterized protein LOC111450733 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A0A0LLN5	4.0e-85	81.97	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 P...	[more]
A0A5D3D454	2.6e-84	80.87	RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Sed0016985.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05250.1	4.1e-58	59.88	RING/U-box superfamily protein	[more]
AT4G10940.1	2.0e-04	30.14	RING/U-box protein	[more]
AT3G05670.1	3.4e-04	37.70	RING/U-box protein	[more]