Sed0015833.1 (mRNA) Chayote v1

Overview


Name	Sed0015833.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	dapper homolog 3 isoform X1
Location	LG12: 29752934 .. 29759076 (+)
Sequence length	1573
RNA-Seq Expression	Sed0015833.1
Synteny	Sed0015833.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTAATCCCCCTAATCAACCCATCCAAACGCCCCCTTTACTATTTTCAGATGCAGAATTCCTCTCAACCAGAATCTAGGGTTTACGAATGTACACCCAATTTATTTCTCAACGATTGATCGCGTTCAGACCAAATAGATTCGTTGCTGTTCATCGAATTCAGAAAACAAGGCGAAAGGATGGGTTCGAGGGATAAAGATTCTACAAGTTACCACCAGCCATTATTAAGCAGCCTTGTCGTACGGGCTTCGAACACTGACGGAATCGGCGGAACCAGCGGCGGCCGTGGAAGCGATTACGAGGCCGGTGAGGTTCGTCGCGTCCCTCCACAATATTCTCGATTGGGTCGATATTCAGATGATTTAGGTTCGTTAATATTCTATTCATATCTTCGTTTTTAAACGCTTTTCGAGCCATAATTGGATGAATTGGTGCTTTGCTAAATTTCTCTGTGTTCTGGGGATTTTGTTACAGCGTTGAATTTAATCGTTGCCCACCTTAGGTTGAATTTATTTGCATATTTTGATTCGAGGTGTATTTGCAAAGAAAGAATGAAAATTATAAATATTGGGAGGAGGAGATTACAGAAAGTTTAACCAGGAGGTCAAAAGACGATTTGACCTATAGTTGTTAAAAAGGATGGTAATGTGTCCCCAAGTGGTGGCACGATGGTCCAATACCTGCCTATGTTCAAGGCAATGGCCATAGGCGAGGAAAGGCGATGGTCTTGAAAGTACTGTCAAAAGCTTGGGCTTTGAAAGTATACTCCCCTCAAGATTCAAGGTTCGAGACTCTCGTGTGACATAATTTGTAGAAACCTTCCGTGGCTCCTTTCTTTCGATGTCTCCCAGTGTCTGGCTTGGGGAGACGGTTATGCCAGGTACAGTTCAGCGGAGTGAAACTCCAATTTTCTGGTTTTAAAGAAAGGAAGGAGAGTAGTGTTTTCGTCAAAATAATGCAGTCTGTCACTAAATCTGAATCAACTAAGTTGTCCAATGCGGTTAAAGGTCATTGTGGTGTGTTCTTTTTTCTGGTTAAAGTTTCTTAACATATGATCCACTGATTTATAGCAGTAGAATGTCCCTTGTTTTTTTGAAAGGATGGCCTCTAAATTAATTTTATTTGATTTGGTATCTTACAAGATGTAAAGATACATATATGGACATATATTTTGTATATTTATGTCACAATATGTTAATAATTTTCCATCCCTTAGGTTCTTTGTCTCACAATTGTAGTCTACCCTGCAGATTTTATTTAAAGCTAAACCCAATTTGCGGGTTATGCTTAAATTATAAGGGAATAATTTAGTTAGCTGAAGTATGCTTTTGTTTCATGGGAGATGAAATGATTAAATATGCTTCTGAAACAAATGAAGAAAACTGTCATCTATCCTTCTCTGGACAGTTTATTGGTCTTTTGTCGTGTATGGTCATATGGATGCTCATGTTTTTAGTTGGAATCCATTAAAGAATTCAATTATGCCAAGATAATTGCAGTATGTCACTCATCTGTATTATTGTAATTTCCTCGTTATTCTTGCTGCCTTATATCACTTGAAGGGTTCTGCCGGGAACTTATGGGGGCAAGCTTGAAAGGTTCTGCTGGGAACTTGGCACCCTTCGGAATTTCTCTTTTGCATTGAATTTTGGGGGTAAAGTTTGTGCAAGACTGAGACATTCTGGGTTGCTGAGTGGAGAGCTATGATATAATCTGATGTCATTTCGGTTTATTTATAGTGTTGGGCCTGGTTGGAGTTAGATATGTATACCAATCATAATTGAATCATGGTGAGGTGGGGGTTTTGTCTGAAAGAAATTGGAGGTGATCAAATAAGAAGCTAAAGACTTCATCCCAAAAAAAAAGAAAAGAAGCTAAAGAGTGTAATTTTTCTGCATGGTTGAGACTATTGGTTCAATTTTTAAGTGAACTTGAAGGTGCGTTGAGATTGGTTTTCTTCAAGAAATAGCATTTATGGTTAAGGGCTACCAGTTTTACTCTGGTATTTGACTTATAGGAAGTGAAGATGCCACTTTATATGCTACGGTGGATTTCTTCATTGTCATGGAACAGACATTGATTGGGTTGTTTTGGTTAAGGGCTATTTGGACTATGTGTAGCAACTTCCTGTTCTATTTGTCAGCTTCATTTAGGGTTGATTTGCATGAAAGTTTTGGATCTTCACATTTCGTTATGTACCTCATGGTTCTCATCATGCAAAATAGGGCTTTGTTTCAATTAAAAATATGGCAGTTTGAATTGGTATAACAATGGCAGCCGAGGGCCCTTGGATTTACTACATTCCTCTCATTCTCCCAAGTCTTACAAATTTTGTTATGGTCAATGATTGAAGATATCTGTTAGGAATGGCCCTTAGGGGAATTAGGGAATACTAGAGGGGTATATGGGCAAATAGTTGGGGAGTTAGTTAGAGACTTATGGTTATGATAAACAGGAGAGGTTTGTTAGTGAGAGGGGAGGCATATTTTAAGCGATTACACTATGGGCTCTGAGAGATGATTCTCTAGAGAGAAAGAGAGGTTTCAAGTCTTATTCAAACTTGGGTTATCTTGTAGTTGTTTCTTTTATTTCGTAATACAATTCGGATCCTATCAATATCATTGTTCGTTTCAACGGATGTTGCTACTAGCCCACTAGACTCTGCATAAAGCTGTTCTTGCGGTATGCATGGAAATCCATTGGTATGTTTCTGAACCGTGCAAGTAAGATTCGGAGTTGATTAATGAATTTACAGAAGAGTAGGAGGGGTGCCATTGATTAGGTTTTTGGATGCTTCGATTTATGTGGGTTGTTTATGATGGTATTTTTCCTGTGAGCTTTTCACTGTGGTATTGCTAATCCTCCCAGGTGTCATTTAACTGAAGAATTCTGTATATTAGCATGGGTTGATTATGCTGTGATTATTTGGATTCTAGCTTGTAGTGTTGTTCATTTAAGAATTGGCTATTGGTGGATGCTCTTCCTCATGGCTAGGATATCAGTGCACTGAGTTTTTCTTCAATGACTTGTTGGTTTCGTGGAAATTGGACATAGATTATATAGAGGCTATGGTAATTGAAAATGTAGATGGATGTGGGTTTACATGTACTATGTGGAAACAGGACATGTGTTCATTGCAAGTAGCCATGGATTTGCTATCTTATTTGCTTCGTTAAAATTTCTCATGACATGGGTGGTATCATATCAAACCTACACGGGCAGTTGGTCATTAGAACTTTCTGTCTTGTCTGCATATTTGCACTTTCTTTTGCTCTGTTCACAGAGAGAAGAAGCCAACAATGAACGGCAATGGTTGCAATTTTTTGGGTTGGTTCTTTTGCGGTTGTTTCGGGGAAAATCTTTGGAAGATATATGGATATTGTACTTCGAATAATTTTCGTATACGAACCTGTTACTTTTCTCAATATCTTATACATCCACCACCTTCTTTATTTCAGGATATAGAATACATGTAGGTACAGCTTCTGCAACACGTCGTCGGAATGAGCACCAATATATTTCTGATTTTGATCATTCAGGTGGTCTCACAAGGGGCCGTGATTTTGGTGGCAGGAGGGATCTCGGAAGATATCGAGATACATCACCTCAATACAGTCGAAGAATAAGTGGCAGCAGGCCATCTGGGAGAGGTTTTGATGGAACTGCACTTTCTCCTGGCCCTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCACAGATCCGTTGTAAGTACTAACCTAGCGCCACAACTTGATATATATAAACATTTGTTGATGTTTTTTGGAAGAACAAAAAATTTCATTGAAAATATGGAATAAGGGATAAACTTCAGACACCCGAAGATGGATTACTACAAGAATGTCTTTCAATTTTACTATAAGATATAAGTTTGTGCTTATCATTGCACCAAAAATACACCTTTGTTATTACCAATTTACCGATTCTAGAAAACTATCAAGTATTAAAAATCCTACTATTCGAAAAATTCATAGAAAAGTATGAATGAAGAAAAGCCGTAACTTCTTTGATCCTTGGAAAGGATGGCCCACCAAGATCACAAAGTGAAAAAAAAATTGAATGCTGTTGGGGAACTGCATTGATCAATTAAAAGCCTTCAAAATAACCTTCCAGAAACGACCAGGAACAAGCCGTAAAGGAGCAATGGATATTGAGATGAGGTTAACATCCTACATCTCACTGTCGCATAACACACCATGTTGACAAAAGAGAAAGACTGCAATCTTTTAGTTCAGTTGTATCAAAAGCGCCACGACTTGAAAATATTTATTTTCGTTGGATACAAATCTTCCCAAATCACTCAATGAAGTTTTTTCAAGCTCGGGTCTGCCATTCCAAGTGATAACCGTGAATTTCCTCGAAGGATCAATAGACGAAGCCCAAGAATTTAGAAGTTTTCAAAGACAGAATAGAGTACAGAAGACATGAATGATTACTTCATTCAACCAAATTCCATATCATTTAAGTTTCTATGAAGCCTCAACCAACACATCCATCACCGAGTCCATAATCTCATCTGTTAGACGAGAAAGTTGCGGAAAAACTATACTGATAACATCACATCTAAGCCACAGGTTCGACTAGAAAGAAGTAGAATAACCGTACCAAGGCAACAAACCTCCCCGGTTAACCATAATATTCAGATTCTTGCTAATAAGTTTCAAAGGAGCCTTATGGGAACTGGAAGTAGATCTCACAGACTTAGGAACGACAACCACTAGAAGATGCGCCCCACCATCACCTCTCAAACCTCCAATGAAGTCACTTTAACCGTTACATTGAATAAGACATTTTTCTATTCATGTTTTTTGGTTGGTTGAATTATTATTGCTATTATCTTATAAATCTTTGGAGGAGTTGATGCTATCAGTTTTTTTTGCTTGAAAAATAGTTTTGCGGCCGGCTTTCATGAAATTTTTTTTCTTCATGCATATTGCATTTATGGATTAAAAAAATTATAAACATAATGCTTTCGGACTGAATGAAAAATGTCACGTGACACATCAGCATAGTTCGCGTGTGCCAATCCTGCAAGTGAATGATAGTTTTTTTTTATGCTCCAAACATGGCACTATACTATATGAAGTTCTCTCTCTTTTTCTTTTTGATATATAACTTGGTGCACTTTCTTTCATTACATTAGGTTCGTTTCTTTTTTCATATCAGTTTTCTTATTCTTCATTAGATGTGACAACCTAAACTTTGCAAGAAGGGAATTTTGTAACAACTGCAAAAGACCTCGCACTGGAGCTGGTGGAAGTTCTCGAAGAGGAGGAGGTTCTGTTAGTCCCCCATCCCTACATTCTCCTCCCAAACGCTTCGCTGCCTACCGAATTGAATGTTCTCCTGTCAGGACTCCTAGTGGATATAGGTCTCCTCCCCGCACTTGGGCCAGGGATGGTCCTAGGGACATTGCAGCTGGTGGCTTGCCACCTCCGAGCTACGAAAGCAGGCATTCCGATCTTCACCTGCGTAGAGATAGAGTAGATTATCTAGAAGAAGATGGCTTGAGAGGAAGATCCAAGTTCGATAGGCCAACTCCTGCGGAGTGGGCCCTTCGAGATCGTGGAAGGGATGACTTCATCACTGGGAGGAAGGTATTTGAAAGAAGGCCACCATCCCCACCACTGTTGTTTCTTCCTCAGCATGGCCGCTTGGCGCGTGCTGTGAGAAAGAGAAGCTGTTCCCCAATTAGAGGTCCGGTTAGATCTCCATTGAGAATCTCGGTCCGGTCTCCACCAAAAGACTTCCGTAGAGATGTTTTTTTTGAAAGGGAGACTGATGACATGCGTGGCCTGGGACGAGAGCGAAATGGAGGTCTATTCTAGTGCTGAAAATAGAACTGTATGTGGCTTTTCATTTAATTCTGGTTAGAGCAGCAACGTGTAGTAGTCTGTGTTTAGAGGCCTTGGAAAGGGGATGTTAGTAATATTTTTTCCTGGTTGTGTTGAAACCTGCTAATGGTAATGGAGTGGATTCCTTTATCTGGTTCTCGTGTTTCATGTTACTTATTATTTTATGGTTTTGAGTCTTTAGATCTATCAGAATTTTCCCTTTTCTTATTGCAAGGTGGAAGATAGAATTATAAATTTGAGAT

mRNA sequence

CTGTAATCCCCCTAATCAACCCATCCAAACGCCCCCTTTACTATTTTCAGATGCAGAATTCCTCTCAACCAGAATCTAGGGTTTACGAATGTACACCCAATTTATTTCTCAACGATTGATCGCGTTCAGACCAAATAGATTCGTTGCTGTTCATCGAATTCAGAAAACAAGGCGAAAGGATGGGTTCGAGGGATAAAGATTCTACAAGTTACCACCAGCCATTATTAAGCAGCCTTGTCGTACGGGCTTCGAACACTGACGGAATCGGCGGAACCAGCGGCGGCCGTGGAAGCGATTACGAGGCCGGTGAGGTTCGTCGCGTCCCTCCACAATATTCTCGATTGGGTCGATATTCAGATGATTTAGGATATAGAATACATGTAGGTACAGCTTCTGCAACACGTCGTCGGAATGAGCACCAATATATTTCTGATTTTGATCATTCAGGTGGTCTCACAAGGGGCCGTGATTTTGGTGGCAGGAGGGATCTCGGAAGATATCGAGATACATCACCTCAATACAGTCGAAGAATAAGTGGCAGCAGGCCATCTGGGAGAGGTTTTGATGGAACTGCACTTTCTCCTGGCCCTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCACAGATCCGTTATGTGACAACCTAAACTTTGCAAGAAGGGAATTTTGTAACAACTGCAAAAGACCTCGCACTGGAGCTGGTGGAAGTTCTCGAAGAGGAGGAGGTTCTGTTAGTCCCCCATCCCTACATTCTCCTCCCAAACGCTTCGCTGCCTACCGAATTGAATGTTCTCCTGTCAGGACTCCTAGTGGATATAGGTCTCCTCCCCGCACTTGGGCCAGGGATGGTCCTAGGGACATTGCAGCTGGTGGCTTGCCACCTCCGAGCTACGAAAGCAGGCATTCCGATCTTCACCTGCGTAGAGATAGAGTAGATTATCTAGAAGAAGATGGCTTGAGAGGAAGATCCAAGTTCGATAGGCCAACTCCTGCGGAGTGGGCCCTTCGAGATCGTGGAAGGGATGACTTCATCACTGGGAGGAAGGTATTTGAAAGAAGGCCACCATCCCCACCACTGTTGTTTCTTCCTCAGCATGGCCGCTTGGCGCGTGCTGTGAGAAAGAGAAGCTGTTCCCCAATTAGAGGTCCGGTTAGATCTCCATTGAGAATCTCGGTCCGGTCTCCACCAAAAGACTTCCGTAGAGATGTTTTTTTTGAAAGGGAGACTGATGACATGCGTGGCCTGGGACGAGAGCGAAATGGAGGTCTATTCTAGTGCTGAAAATAGAACTGTATGTGGCTTTTCATTTAATTCTGGTTAGAGCAGCAACGTGTAGTAGTCTGTGTTTAGAGGCCTTGGAAAGGGGATGTTAGTAATATTTTTTCCTGGTTGTGTTGAAACCTGCTAATGGTAATGGAGTGGATTCCTTTATCTGGTTCTCGTGTTTCATGTTACTTATTATTTTATGGTTTTGAGTCTTTAGATCTATCAGAATTTTCCCTTTTCTTATTGCAAGGTGGAAGATAGAATTATAAATTTGAGAT

Coding sequence (CDS)

ATGGGTTCGAGGGATAAAGATTCTACAAGTTACCACCAGCCATTATTAAGCAGCCTTGTCGTACGGGCTTCGAACACTGACGGAATCGGCGGAACCAGCGGCGGCCGTGGAAGCGATTACGAGGCCGGTGAGGTTCGTCGCGTCCCTCCACAATATTCTCGATTGGGTCGATATTCAGATGATTTAGGATATAGAATACATGTAGGTACAGCTTCTGCAACACGTCGTCGGAATGAGCACCAATATATTTCTGATTTTGATCATTCAGGTGGTCTCACAAGGGGCCGTGATTTTGGTGGCAGGAGGGATCTCGGAAGATATCGAGATACATCACCTCAATACAGTCGAAGAATAAGTGGCAGCAGGCCATCTGGGAGAGGTTTTGATGGAACTGCACTTTCTCCTGGCCCTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCACAGATCCGTTATGTGACAACCTAAACTTTGCAAGAAGGGAATTTTGTAACAACTGCAAAAGACCTCGCACTGGAGCTGGTGGAAGTTCTCGAAGAGGAGGAGGTTCTGTTAGTCCCCCATCCCTACATTCTCCTCCCAAACGCTTCGCTGCCTACCGAATTGAATGTTCTCCTGTCAGGACTCCTAGTGGATATAGGTCTCCTCCCCGCACTTGGGCCAGGGATGGTCCTAGGGACATTGCAGCTGGTGGCTTGCCACCTCCGAGCTACGAAAGCAGGCATTCCGATCTTCACCTGCGTAGAGATAGAGTAGATTATCTAGAAGAAGATGGCTTGAGAGGAAGATCCAAGTTCGATAGGCCAACTCCTGCGGAGTGGGCCCTTCGAGATCGTGGAAGGGATGACTTCATCACTGGGAGGAAGGTATTTGAAAGAAGGCCACCATCCCCACCACTGTTGTTTCTTCCTCAGCATGGCCGCTTGGCGCGTGCTGTGAGAAAGAGAAGCTGTTCCCCAATTAGAGGTCCGGTTAGATCTCCATTGAGAATCTCGGTCCGGTCTCCACCAAAAGACTTCCGTAGAGATGTTTTTTTTGAAAGGGAGACTGATGACATGCGTGGCCTGGGACGAGAGCGAAATGGAGGTCTATTCTAG

Protein sequence

MGSRDKDSTSYHQPLLSSLVVRASNTDGIGGTSGGRGSDYEAGEVRRVPPQYSRLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQYSRRISGSRPSGRGFDGTALSPGPRGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREFCNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARDGPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDDFITGRKVFERRPPSPPLLFLPQHGRLARAVRKRSCSPIRGPVRSPLRISVRSPPKDFRRDVFFERETDDMRGLGRERNGGLF

Homology

[Close]

BLAST of Sed0015833.1 vs. NCBI nr
Match: XP_022961322.1 (uncharacterized protein LOC111461847 isoform X7 [Cucurbita moschata])

HSP 1 Score: 582.4 bits (1500), Expect = 2.8e-162
Identity = 296/388 (76.29%), Postives = 323/388 (83.25%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPSPPLLFLPQHGRLARAVRKRSCSPIRGPVRSPLRISVRS------PP 360
           FI  RK FERRPP PPL  LPQ GR AR VR+RS SPIRGPVRSPLR+ +RS      PP
Sbjct: 301 FINERKGFERRPPPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPP 360

Query: 361 KDFRRDVFFERETDDMRGLGRERNGGLF 375
           KD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 KDYRRDVFVERERDDRRGLGRDRDGGPF 386

[Close]

BLAST of Sed0015833.1 vs. NCBI nr
Match: XP_022961321.1 (uncharacterized protein LOC111461847 isoform X6 [Cucurbita moschata])

HSP 1 Score: 575.9 bits (1483), Expect = 2.6e-160
Identity = 296/389 (76.09%), Postives = 323/389 (83.03%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS-PPLLFLPQHGRLARAVRKRSCSPIRGPVRSPLRISVRS------P 360
           FI  RK FERRP S PPL  LPQ GR AR VR+RS SPIRGPVRSPLR+ +RS      P
Sbjct: 301 FINERKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLP 360

Query: 361 PKDFRRDVFFERETDDMRGLGRERNGGLF 375
           PKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 PKDYRRDVFVERERDDRRGLGRDRDGGPF 387

[Close]

BLAST of Sed0015833.1 vs. NCBI nr
Match: XP_038880192.1 (uncharacterized protein LOC120071861 isoform X1 [Benincasa hispida])

HSP 1 Score: 572.4 bits (1474), Expect = 2.9e-159
Identity = 301/390 (77.18%), Postives = 324/390 (83.08%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSRDKDST++HQPLLSSLVVRASN+D    G+GGTSG   GRGSDYEAGE+ R PPQYS
Sbjct: 1   MGSRDKDSTTHHQPLLSSLVVRASNSDGGGGGVGGTSGGRVGRGSDYEAGEITRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYRIH G+ S TRRR+ H+YISDFDHSG LTRGRDFGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRIHAGSVSPTRRRDVHRYISDFDHSGNLTRGRDFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRRISG RP GRG DG A  PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRISGGRPFGRGVDGPA--PGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPR GA GS RR  G V PPSLHSPP+RFAA+ IE SP RT + YRSPPR+WARD
Sbjct: 181 CNNCNRPRNGASGSPRR--GYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTP-AEWALRDRGRD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL +D  RGRSKFDRP P A+WALRD GRD
Sbjct: 241 GPREIAAGGLAPPRYESRYSD-HLRRDRVDYL-DDSFRGRSKFDRPLPSADWALRDNGRD 300

Query: 301 DFITGRKVFERRPPS-PPLLFLPQHGRLARAVRKRSCSPIRGPVRSPLRISVRS------ 360
           DFI+ RK FERRPPS PPL  LPQ GR AR VR+RS SPIRGPVRSPLR+ +RS      
Sbjct: 301 DFISERKGFERRPPSPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSSGL 360

Query: 361 PPKDFRRDVFFERETDDMRGLGRERNGGLF 375
           PPKDFRRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 PPKDFRRDVFVERERDDRRGLGRDRDGGPF 384

[Close]

BLAST of Sed0015833.1 vs. NCBI nr
Match: XP_022961315.1 (uncharacterized protein LOC111461847 isoform X2 [Cucurbita moschata])

HSP 1 Score: 568.2 bits (1463), Expect = 5.4e-158
Identity = 296/409 (72.37%), Postives = 323/409 (78.97%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS---------------------PPLLFLPQHGRLARAVRKRSCSPIR 360
           FI  RK FERRP S                     PPL  LPQ GR AR VR+RS SPIR
Sbjct: 301 FINERKGFERRPLSPKGFERRPLSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIR 360

Query: 361 GPVRSPLRISVRS------PPKDFRRDVFFERETDDMRGLGRERNGGLF 375
           GPVRSPLR+ +RS      PPKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 GPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGPF 407

[Close]

BLAST of Sed0015833.1 vs. NCBI nr
Match: XP_022961316.1 (uncharacterized protein LOC111461847 isoform X3 [Cucurbita moschata])

HSP 1 Score: 568.2 bits (1463), Expect = 5.4e-158
Identity = 296/409 (72.37%), Postives = 323/409 (78.97%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS---------------------PPLLFLPQHGRLARAVRKRSCSPIR 360
           FI  RK FERRP S                     PPL  LPQ GR AR VR+RS SPIR
Sbjct: 301 FINERKGFERRPLSPKGFERRPQSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIR 360

Query: 361 GPVRSPLRISVRS------PPKDFRRDVFFERETDDMRGLGRERNGGLF 375
           GPVRSPLR+ +RS      PPKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 GPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGPF 407

[Close]

BLAST of Sed0015833.1 vs. ExPASy Swiss-Prot
Match: Q01844 (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-06
Identity = 37/84 (44.05%), Postives = 41/84 (48.81%), Query Frame = 0


Query: 122 RPSGRGFDGTALSP-GPRGERSKNNP----NVRPRDGDWYCTDPLCDNLNFARREFCNNC 181
           R  GRG D     P GPRG  S+ NP    NV+ R GDW C +P C N NFA R  CN C
Sbjct: 486 RMGGRGGDRGGFPPRGPRG--SRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQC 545

Query: 182 KRPRTGA---------GGSSRRGG 192
           K P+            GG   RGG
Sbjct: 546 KAPKPEGFLPPPFPPPGGDRGRGG 567

[Close]

BLAST of Sed0015833.1 vs. ExPASy Swiss-Prot
Match: Q61545 (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-06
Identity = 37/84 (44.05%), Postives = 41/84 (48.81%), Query Frame = 0


Query: 122 RPSGRGFDGTALSP-GPRGERSKNNP----NVRPRDGDWYCTDPLCDNLNFARREFCNNC 181
           R  GRG D     P GPRG  S+ NP    NV+ R GDW C +P C N NFA R  CN C
Sbjct: 485 RMGGRGGDRGGFPPRGPRG--SRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQC 544

Query: 182 KRPRTGA---------GGSSRRGG 192
           K P+            GG   RGG
Sbjct: 545 KAPKPEGFLPPPFPPPGGDRGRGG 566

[Close]

BLAST of Sed0015833.1 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-05
Identity = 42/103 (40.78%), Postives = 45/103 (43.69%), Query Frame = 0


Query: 90  GGLTRGRDFGGRRDLGRYRDTSPQYSRRISGSRPSGRGFDGTALSPGPRGERSKNNPNVR 149
           GG  RG  FGGRR  G           R       G G  G     G  G       NV+
Sbjct: 219 GGGGRG-GFGGRRGGGGGGGGGGGGGGRFD----RGGGGGGGRYDRGGGGGGGGGGGNVQ 278

Query: 150 PRDGDWYCTDPLCDNLNFARREFCNNCKRPRTGAGGSSRRGGG 193
           PRDGDW C    C+N NFA R  CN CK P+    GSS  GGG
Sbjct: 279 PRDGDWKCNS--CNNTNFAWRNECNRCKTPKGDDEGSSGGGGG 314

[Close]

BLAST of Sed0015833.1 vs. ExPASy Swiss-Prot
Match: Q94KD0 (Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana OX=3702 GN=TAF15B PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-05
Identity = 38/107 (35.51%), Postives = 45/107 (42.06%), Query Frame = 0


Query: 91  GLTRGRDFGGRRDLGRYRDTSPQYSRRISGSRPSGRGFDGTALSPGPRGERSKNNPNVRP 150
           G + G  +GGR   G              G     RG  G     G RG R         
Sbjct: 40  GASGGGSYGGRGGYG-------------GGGGRGNRGGGGGGYQGGDRGGRGSGGGG--- 99

Query: 151 RDGDWYCTDPLCDNLNFARREFCNNC--KRPRTGAGGSSRRGGGSVS 196
           RDGDW C +P C N+NFARR  CN C    P   + G++ RGGG  S
Sbjct: 100 RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYS 130

[Close]

BLAST of Sed0015833.1 vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-04
Identity = 35/99 (35.35%), Postives = 43/99 (43.43%), Query Frame = 0


Query: 95  GRDFGGRRDLGRYRDTSPQYSR-RISGSRPSGRGFDGTALSPGPRGERSKNNPNVRPRDG 154
           G++F G      +    P++ R   SG    GRG        G RG          P+ G
Sbjct: 305 GKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRG--------GYRGRGGFQGRGGDPKSG 364

Query: 155 DWYCTDPLCDNLNFARREFCNNCKRPRTGAGGSSRRGGG 193
           DW C +P C N+NFARR  CN C  PR      SR  GG
Sbjct: 365 DWVCPNPSCGNMNFARRNSCNQCNEPRP---EDSRPSGG 392

[Close]

BLAST of Sed0015833.1 vs. ExPASy TrEMBL
Match: A0A6J1H9W7 (uncharacterized protein LOC111461847 isoform X7 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.3e-162
Identity = 296/388 (76.29%), Postives = 323/388 (83.25%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPSPPLLFLPQHGRLARAVRKRSCSPIRGPVRSPLRISVRS------PP 360
           FI  RK FERRPP PPL  LPQ GR AR VR+RS SPIRGPVRSPLR+ +RS      PP
Sbjct: 301 FINERKGFERRPPPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPP 360

Query: 361 KDFRRDVFFERETDDMRGLGRERNGGLF 375
           KD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 KDYRRDVFVERERDDRRGLGRDRDGGPF 386

[Close]

BLAST of Sed0015833.1 vs. ExPASy TrEMBL
Match: A0A6J1HA20 (uncharacterized protein LOC111461847 isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.3e-160
Identity = 296/389 (76.09%), Postives = 323/389 (83.03%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS-PPLLFLPQHGRLARAVRKRSCSPIRGPVRSPLRISVRS------P 360
           FI  RK FERRP S PPL  LPQ GR AR VR+RS SPIRGPVRSPLR+ +RS      P
Sbjct: 301 FINERKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLP 360

Query: 361 PKDFRRDVFFERETDDMRGLGRERNGGLF 375
           PKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 PKDYRRDVFVERERDDRRGLGRDRDGGPF 387

[Close]

BLAST of Sed0015833.1 vs. ExPASy TrEMBL
Match: A0A6J1HBT6 (uncharacterized protein LOC111461847 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.6e-158
Identity = 296/409 (72.37%), Postives = 323/409 (78.97%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS---------------------PPLLFLPQHGRLARAVRKRSCSPIR 360
           FI  RK FERRP S                     PPL  LPQ GR AR VR+RS SPIR
Sbjct: 301 FINERKGFERRPLSPKGFERRPLSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIR 360

Query: 361 GPVRSPLRISVRS------PPKDFRRDVFFERETDDMRGLGRERNGGLF 375
           GPVRSPLR+ +RS      PPKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 GPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGPF 407

[Close]

BLAST of Sed0015833.1 vs. ExPASy TrEMBL
Match: A0A6J1HA13 (uncharacterized protein LOC111461847 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.6e-158
Identity = 296/409 (72.37%), Postives = 323/409 (78.97%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS---------------------PPLLFLPQHGRLARAVRKRSCSPIR 360
           FI  RK FERRP S                     PPL  LPQ GR AR VR+RS SPIR
Sbjct: 301 FINERKGFERRPLSPKGFERRPQSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIR 360

Query: 361 GPVRSPLRISVRS------PPKDFRRDVFFERETDDMRGLGRERNGGLF 375
           GPVRSPLR+ +RS      PPKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 GPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGPF 407

[Close]

BLAST of Sed0015833.1 vs. ExPASy TrEMBL
Match: A0A6J1HDP1 (uncharacterized protein LOC111461847 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461847 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.8e-157
Identity = 296/419 (70.64%), Postives = 323/419 (77.09%), Query Frame = 0


Query: 1   MGSRDKDSTSYHQPLLSSLVVRASNTD----GIGGTSG---GRGSDYEAGEVRRVPPQYS 60
           MGSR KDST++HQPLLSSLVVR SN+D    G+GGTSG   GRGSDYEAGEV R PPQYS
Sbjct: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLGRYSDDLGYRIHVGTASATRRRNEHQYISDFDHSGGLTRGRDFGGRRDLGRYRDTSPQ 120
           RL RYSDDLGYR+H G+ S TRRR++H+YISDFDHS GLTRGR+FGG RDLGRYRDTSP 
Sbjct: 61  RLDRYSDDLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPH 120

Query: 121 YSRRISGSRPSGRGFDGTALSPGP-RGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREF 180
           YSRR+SG RP GRGFDG   +PGP RGERSKNNPNVRPRDGDWYC+DPLCDNLNFARREF
Sbjct: 121 YSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREF 180

Query: 181 CNNCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARD 240
           CNNC RPRTGAGGS RR GG V PPSLHSPP+RFAA+ IE SP RT + YRSPPR WARD
Sbjct: 181 CNNCNRPRTGAGGSPRR-GGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARD 240

Query: 241 GPRDIAAGGLPPPSYESRHSDLHLRRDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDD 300
           GPR+IAAGGL PP YESR+SD HLRRDRVDYL ED  RGRSKFDR  P++W+LRD GRDD
Sbjct: 241 GPREIAAGGLAPPRYESRYSDHHLRRDRVDYL-EDSFRGRSKFDRLPPSDWSLRDNGRDD 300

Query: 301 FITGRKVFERRPPS-------------------------------PPLLFLPQHGRLARA 360
           FI  RK FERRP S                               PPL  LPQ GR AR 
Sbjct: 301 FINERKGFERRPLSPKGFERRPLSPKGFERRPQSPKGFERRPLSPPPLSLLPQRGRWARD 360

Query: 361 VRKRSCSPIRGPVRSPLRISVRS------PPKDFRRDVFFERETDDMRGLGRERNGGLF 375
           VR+RS SPIRGPVRSPLR+ +RS      PPKD+RRDVF ERE DD RGLGR+R+GG F
Sbjct: 361 VRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGPF 417

[Close]

BLAST of Sed0015833.1 vs. TAIR 10
Match: AT4G28990.1 (RNA-binding protein-related )

HSP 1 Score: 183.3 bits (464), Expect = 3.5e-46
Identity = 153/391 (39.13%), Postives = 199/391 (50.90%), Query Frame = 0


Query: 1   MGSRDKD-STSYHQPLLSSLVVRASNTDGIGGTSGGRGS--DYEAGEVRRVPPQYSRLGR 60
           MGS +K+ +T +H P +SSLVVR S   G      GR +  DYE GEV R  P ++R  R
Sbjct: 1   MGSTEKEQTTQHHPPHISSLVVRPS---GSNDREDGRNAAGDYEPGEVSRDRPSFNRSDR 60

Query: 61  Y-SDDLGYRIHVGTASATRRRNE-HQYISDFDHSGGLTRGRDFGGRRDL-GRYRDTSPQY 120
           Y  D+ G+R    ++S  RR  E H++ SD +HSG   RGR+   RR+  GR+RD SP  
Sbjct: 61  YKGDNGGHRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPL 120

Query: 121 SRRISGSRPSGRGFDGTALSPGPRGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREFCN 180
           +R  +G+RP  RG DG     G  G    N   V+PR+GDWYC DPLC NLNFARRE C 
Sbjct: 121 ARGGAGARPYRRGLDGPEPPHGRDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCY 180

Query: 181 NCKRPRTGAGGSSRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARDGP 240
            CKR R  A  +S      + PP  HSP + F             +GYRSPPR W RD  
Sbjct: 181 KCKRHRY-APANSPPLPRLLPPPMNHSPRRDF-------------NGYRSPPRGWPRD-- 240

Query: 241 RDIAAGGLPPPSYESRHSDLHLR-RDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDDF 300
                   PPP ++  H     R RDR  Y + +         R   ++WA  +      
Sbjct: 241 -------YPPPRHD--HPTWRDRERDRPHYSDHE-----YPPSRRIASDWAHTEP----- 300

Query: 301 ITGRKVFERRPPSPPLLFLPQHGRLARAVRKRSCS-PIRGPVRSPLR------ISVRSPP 360
              +  ++RRPP  P    P+ GR  R +R+RS S P+R     PLR      +    PP
Sbjct: 301 -LPKPHYDRRPPLSP----PRGGRWGRVLRERSRSPPLRDVPPPPLRDGPPPSLRGGGPP 347

Query: 361 --KDFRRDVFFERE-TDDMRGLGRERNGGLF 375
             +D+RRD  F+RE  DD RG GR R G  +
Sbjct: 361 LHRDYRRDSHFDRERRDDGRG-GRGRMGNSY 347

[Close]

BLAST of Sed0015833.1 vs. TAIR 10
Match: AT4G28990.2 (RNA-binding protein-related )

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-41
Identity = 154/439 (35.08%), Postives = 199/439 (45.33%), Query Frame = 0


Query: 1   MGSRDKD-STSYHQPLLSSLVVRASNTDGIGGTSGGRGS--DYEAGEVRRVPPQYSRLGR 60
           MGS +K+ +T +H P +SSLVVR S   G      GR +  DYE GEV R  P ++R  R
Sbjct: 1   MGSTEKEQTTQHHPPHISSLVVRPS---GSNDREDGRNAAGDYEPGEVSRDRPSFNRSDR 60

Query: 61  YSDD-------------------------------------------------LGYRIHV 120
           Y  D                                                 LG+R   
Sbjct: 61  YKGDNGELSRHHLFLSLQMLVIVYVLVNVFDNALITITMLCKLQMSIVLALKYLGHRTRA 120

Query: 121 GTASATRRRNE-HQYISDFDHSGGLTRGRDFGGRRDL-GRYRDTSPQYSRRISGSRPSGR 180
            ++S  RR  E H++ SD +HSG   RGR+   RR+  GR+RD SP  +R  +G+RP  R
Sbjct: 121 SSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARGGAGARPYRR 180

Query: 181 GFDGTALSPGPRGERSKNNPNVRPRDGDWYCTDPLCDNLNFARREFCNNCKRPRTGAGGS 240
           G DG     G  G    N   V+PR+GDWYC DPLC NLNFARRE C  CKR R  A  +
Sbjct: 181 GLDGPEPPHGRDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYKCKRHRY-APAN 240

Query: 241 SRRGGGSVSPPSLHSPPKRFAAYRIECSPVRTPSGYRSPPRTWARDGPRDIAAGGLPPPS 300
           S      + PP  HSP + F             +GYRSPPR W RD          PPP 
Sbjct: 241 SPPLPRLLPPPMNHSPRRDF-------------NGYRSPPRGWPRD---------YPPPR 300

Query: 301 YESRHSDLHLR-RDRVDYLEEDGLRGRSKFDRPTPAEWALRDRGRDDFITGRKVFERRPP 360
           ++  H     R RDR  Y + +         R   ++WA  +         +  ++RRPP
Sbjct: 301 HD--HPTWRDRERDRPHYSDHE-----YPPSRRIASDWAHTEP------LPKPHYDRRPP 360

Query: 361 SPPLLFLPQHGRLARAVRKRSCS-PIRGPVRSPLR------ISVRSPP--KDFRRDVFFE 375
             P    P+ GR  R +R+RS S P+R     PLR      +    PP  +D+RRD  F+
Sbjct: 361 LSP----PRGGRWGRVLRERSRSPPLRDVPPPPLRDGPPPSLRGGGPPLHRDYRRDSHFD 395

[Close]

BLAST of Sed0015833.1 vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-07
Identity = 38/107 (35.51%), Postives = 45/107 (42.06%), Query Frame = 0


Query: 91  GLTRGRDFGGRRDLGRYRDTSPQYSRRISGSRPSGRGFDGTALSPGPRGERSKNNPNVRP 150
           G + G  +GGR   G              G     RG  G     G RG R         
Sbjct: 40  GASGGGSYGGRGGYG-------------GGGGRGNRGGGGGGYQGGDRGGRGSGGGG--- 99

Query: 151 RDGDWYCTDPLCDNLNFARREFCNNC--KRPRTGAGGSSRRGGGSVS 196
           RDGDW C +P C N+NFARR  CN C    P   + G++ RGGG  S
Sbjct: 100 RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYS 130

[Close]

BLAST of Sed0015833.1 vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-07
Identity = 38/107 (35.51%), Postives = 45/107 (42.06%), Query Frame = 0


Query: 91  GLTRGRDFGGRRDLGRYRDTSPQYSRRISGSRPSGRGFDGTALSPGPRGERSKNNPNVRP 150
           G + G  +GGR   G              G     RG  G     G RG R         
Sbjct: 40  GASGGGSYGGRGGYG-------------GGGGRGNRGGGGGGYQGGDRGGRGSGGGG--- 99

Query: 151 RDGDWYCTDPLCDNLNFARREFCNNC--KRPRTGAGGSSRRGGGSVS 196
           RDGDW C +P C N+NFARR  CN C    P   + G++ RGGG  S
Sbjct: 100 RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSSGANDRGGGGYS 130

The following BLAST results are available for this feature:

BLAST of Sed0015833.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961322.1	2.8e-162	76.29	uncharacterized protein LOC111461847 isoform X7 [Cucurbita moschata]	[more]
XP_022961321.1	2.6e-160	76.09	uncharacterized protein LOC111461847 isoform X6 [Cucurbita moschata]	[more]
XP_038880192.1	2.9e-159	77.18	uncharacterized protein LOC120071861 isoform X1 [Benincasa hispida]	[more]
XP_022961315.1	5.4e-158	72.37	uncharacterized protein LOC111461847 isoform X2 [Cucurbita moschata]	[more]
XP_022961316.1	5.4e-158	72.37	uncharacterized protein LOC111461847 isoform X3 [Cucurbita moschata]	[more]

BLAST of Sed0015833.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01844	5.9e-06	44.05	RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1	[more]
Q61545	5.9e-06	44.05	RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2	[more]
Q27294	1.0e-05	40.78	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
Q94KD0	1.0e-05	35.51	Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana OX=370...	[more]
Q92804	1.4e-04	35.35	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]

BLAST of Sed0015833.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9W7	1.3e-162	76.29	uncharacterized protein LOC111461847 isoform X7 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HA20	1.3e-160	76.09	uncharacterized protein LOC111461847 isoform X6 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HBT6	2.6e-158	72.37	uncharacterized protein LOC111461847 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HA13	2.6e-158	72.37	uncharacterized protein LOC111461847 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HDP1	3.8e-157	70.64	uncharacterized protein LOC111461847 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0015833.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28990.1	3.5e-46	39.13	RNA-binding protein-related	[more]
AT4G28990.2	2.6e-41	35.08	RNA-binding protein-related	[more]
AT5G58470.1	7.1e-07	35.51	TBP-associated factor 15B	[more]
AT5G58470.2	7.1e-07	35.51	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 153..179 e-value: 4.5E-4 score: 29.5
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 155..176
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 151..182 score: 9.529128
None	No IPR available	GENE3D	4.10.1060.10		coord: 141..182 e-value: 2.6E-12 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR23238:SF26	GH13594P-RELATED	coord: 64..332
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 64..332
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 143..182

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0015833	Sed0015833	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015833.1-five_prime_utr	Sed0015833.1-five_prime_utr-LG12:29752934..29753112	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015833.1-exon	Sed0015833.1-exon-LG12:29752934..29753299	exon
Sed0015833.1-exon	Sed0015833.1-exon-LG12:29756392..29756686	exon
Sed0015833.1-exon	Sed0015833.1-exon-LG12:29758165..29759076	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015833.1-cds	Sed0015833.1-cds-LG12:29753113..29753299	CDS
Sed0015833.1-cds	Sed0015833.1-cds-LG12:29756392..29756686	CDS
Sed0015833.1-cds	Sed0015833.1-cds-LG12:29758165..29758807	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015833.1-three_prime_utr	Sed0015833.1-three_prime_utr-LG12:29758808..29759076	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0015833.1	Sed0015833.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0046872	metal ion binding