Sed0014592.1 (mRNA) Chayote v1

Overview


Name	Sed0014592.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	LYR motif-containing protein At3g19508
Location	LG07: 9649342 .. 9650003 (+)
Sequence length	576
RNA-Seq Expression	Sed0014592.1
Synteny	Sed0014592.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAACAAAAGCACTAGATCGAGAAATCGAGAAGCAGACGGCGGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGCGAAGTTCTCCGGCTGGTGAAGCGGCTGCCGAAGGACTCCAGGCCTTACTACGCCAAGTACGCCCGAGAGAATTTCGTCAATTACAGAGAAATCGATGCCAACGACGCCAAATCCCTACAAGAACTCTTCCACAGAGCTTACGATCACTCCCTTTGGATTCTCAACAAGGTTCCGATCTAATCCTTTCAACTTTTCCGTTTCCAATTTGTATTCTATCGGATCCGTTTTGAGAGTTTCTGGTGATTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAACTGAGGGAGATCTGTCATAGTTAGTGTGCGCTTTGTGTTTGCAATTTTCTTGAAATAATGCCTCTAAGGAATCGGCATCGGTTATTACACGTGAAACTCCGGCTGCCGCCGCCGTGGATTCTGATGAAGTCGTCGCCGGTACGATATTAGAGAATTGTTTATTTAAGAAGAAATACATTAGGTGAATTTATCTGTTCTTGGATCATCCTTTTATGTAAAATAAAGAAAATTTTCAGCCTGAATCGAATTTAAAACTTATCCAAGTTAATATTCTTTCAGTATCATTTTCTTCTTTC

mRNA sequence

GGAAACAAAAGCACTAGATCGAGAAATCGAGAAGCAGACGGCGGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGCGAAGTTCTCCGGCTGGTGAAGCGGCTGCCGAAGGACTCCAGGCCTTACTACGCCAAGTACGCCCGAGAGAATTTCGTCAATTACAGAGAAATCGATGCCAACGACGCCAAATCCCTACAAGAACTCTTCCACAGAGCTTACGATCACTCCCTTTGGATTCTCAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAACTGAGGGAGATCTGTCATAGTTAGTGTGCGCTTTGTGTTTGCAATTTTCTTGAAATAATGCCTCTAAGGAATCGGCATCGGTTATTACACGTGAAACTCCGGCTGCCGCCGCCGTGGATTCTGATGAAGTCGTCGCCGGTACGATATTAGAGAATTGTTTATTTAAGAAGAAATACATTAGGTGAATTTATCTGTTCTTGGATCATCCTTTTATGTAAAATAAAGAAAATTTTCAGCCTGAATCGAATTTAAAACTTATCCAAGTTAATATTCTTTCAGTATCATTTTCTTCTTTC

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAATATACGGCGAAGTTCTCCGGCTGGTGAAGCGGCTGCCGAAGGACTCCAGGCCTTACTACGCCAAGTACGCCCGAGAGAATTTCGTCAATTACAGAGAAATCGATGCCAACGACGCCAAATCCCTACAAGAACTCTTCCACAGAGCTTACGATCACTCCCTTTGGATTCTCAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAACTGAGGGAGATCTGTCATAGTTAG

Protein sequence

MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSLWILNKYSVDGSAADKLREICHS

Homology

[Close]

BLAST of Sed0014592.1 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 75/82 (91.46%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIYGEVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY HSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Sed0014592.1 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.7e-36
Identity = 73/82 (89.02%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV+RLPKD+RPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Sed0014592.1 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 72/82 (87.80%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIY EVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSV+GSAADKL+EIC+S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of Sed0014592.1 vs. NCBI nr
Match: XP_022149201.1 (LYR motif-containing protein At3g19508 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIYG VLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSLQELFHRAY+HS+
Sbjct: 1  MEKALRIYGGVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLQELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+LNKYSVD SAADKLREIC
Sbjct: 61 WVLNKYSVDPSAADKLREIC 80

[Close]

BLAST of Sed0014592.1 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.0e-34
Identity = 69/81 (85.19%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV++LPKD+RPYYAKY RENFVNYRE+DA DAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICH 82
          W+LNKYSVDGSAADKL+EIC+
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of Sed0014592.1 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-27
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          M+K LR+YG V+RLV+ LP DSRPYYAKYARENFVNYRE+D ++  SL ELF RAY+HSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+L KYS+D SAA KL+EIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

[Close]

BLAST of Sed0014592.1 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 8  YGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSLWILNK 66
          Y EVL+LVKRLP  SR YYA+YARENFV Y E++  D +S++ L  R + H+ W+L K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of Sed0014592.1 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 73/82 (89.02%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV+RLPKD+RPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Sed0014592.1 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 73/82 (89.02%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV+RLPKD+RPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Sed0014592.1 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.2e-35
Identity = 72/82 (87.80%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIY EVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSV+GSAADKL+EIC+S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of Sed0014592.1 vs. ExPASy TrEMBL
Match: A0A6J1D7N7 (LYR motif-containing protein At3g19508 OS=Momordica charantia OX=3673 GN=LOC111017679 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIYG VLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSLQELFHRAY+HS+
Sbjct: 1  MEKALRIYGGVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLQELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+LNKYSVD SAADKLREIC
Sbjct: 61 WVLNKYSVDPSAADKLREIC 80

[Close]

BLAST of Sed0014592.1 vs. ExPASy TrEMBL
Match: A0A6J1J656 (LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC111482114 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 71/82 (86.59%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIY EVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELF+RAY+HS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSV+GSAADKL+EIC+S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of Sed0014592.1 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-28
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          M+K LR+YG V+RLV+ LP DSRPYYAKYARENFVNYRE+D ++  SL ELF RAY+HSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+L KYS+D SAA KL+EIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

The following BLAST results are available for this feature:

BLAST of Sed0014592.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898400.1	3.3e-36	91.46	LYR motif-containing protein At3g19508 [Benincasa hispida]	[more]
XP_008456173.1	5.7e-36	89.02	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L...	[more]
XP_022941949.1	1.1e-34	87.80	LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ...	[more]
XP_022149201.1	2.4e-34	91.25	LYR motif-containing protein At3g19508 [Momordica charantia]	[more]
XP_004140718.1	7.0e-34	85.19	LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica...	[more]

BLAST of Sed0014592.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3M2	2.9e-27	71.25	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
A9SNJ1	5.0e-11	55.17	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G...	[more]

BLAST of Sed0014592.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6G8	2.8e-36	89.02	LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C3W4	2.8e-36	89.02	LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P...	[more]
A0A6J1FPX9	5.2e-35	87.80	LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1D7N7	1.2e-34	91.25	LYR motif-containing protein At3g19508 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1J656	3.4e-34	86.59	LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC1114821...	[more]

BLAST of Sed0014592.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19508.1	2.1e-28	71.25	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..57 e-value: 4.0E-5 score: 23.6
None	No IPR available	PANTHER	PTHR36758	OS01G0342800 PROTEIN	coord: 1..81
None	No IPR available	CDD	cd20269	Complex1_LYR_LYRM9	coord: 4..65 e-value: 6.64531E-21 score: 75.7415

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0014592	Sed0014592	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014592.1-five_prime_utr	Sed0014592.1-five_prime_utr-LG07:9649342..9649396	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014592.1-exon	Sed0014592.1-exon-LG07:9649342..9649591	exon
Sed0014592.1-exon	Sed0014592.1-exon-LG07:9649678..9650003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014592.1-cds	Sed0014592.1-cds-LG07:9649397..9649591	CDS
Sed0014592.1-cds	Sed0014592.1-cds-LG07:9649678..9649731	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014592.1-three_prime_utr	Sed0014592.1-three_prime_utr-LG07:9649732..9650003	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0014592.1	Sed0014592.1-protein	polypeptide