Sed0014592 (gene) Chayote v1

Overview
NameSed0014592
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLYR motif-containing protein At3g19508
LocationLG07: 9649342 .. 9650003 (+)
RNA-Seq ExpressionSed0014592
SyntenySed0014592
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAACAAAAGCACTAGATCGAGAAATCGAGAAGCAGACGGCGGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGCGAAGTTCTCCGGCTGGTGAAGCGGCTGCCGAAGGACTCCAGGCCTTACTACGCCAAGTACGCCCGAGAGAATTTCGTCAATTACAGAGAAATCGATGCCAACGACGCCAAATCCCTACAAGAACTCTTCCACAGAGCTTACGATCACTCCCTTTGGATTCTCAACAAGGTTCCGATCTAATCCTTTCAACTTTTCCGTTTCCAATTTGTATTCTATCGGATCCGTTTTGAGAGTTTCTGGTGATTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAACTGAGGGAGATCTGTCATAGTTAGTGTGCGCTTTGTGTTTGCAATTTTCTTGAAATAATGCCTCTAAGGAATCGGCATCGGTTATTACACGTGAAACTCCGGCTGCCGCCGCCGTGGATTCTGATGAAGTCGTCGCCGGTACGATATTAGAGAATTGTTTATTTAAGAAGAAATACATTAGGTGAATTTATCTGTTCTTGGATCATCCTTTTATGTAAAATAAAGAAAATTTTCAGCCTGAATCGAATTTAAAACTTATCCAAGTTAATATTCTTTCAGTATCATTTTCTTCTTTC

mRNA sequence

GGAAACAAAAGCACTAGATCGAGAAATCGAGAAGCAGACGGCGGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGCGAAGTTCTCCGGCTGGTGAAGCGGCTGCCGAAGGACTCCAGGCCTTACTACGCCAAGTACGCCCGAGAGAATTTCGTCAATTACAGAGAAATCGATGCCAACGACGCCAAATCCCTACAAGAACTCTTCCACAGAGCTTACGATCACTCCCTTTGGATTCTCAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAACTGAGGGAGATCTGTCATAGTTAGTGTGCGCTTTGTGTTTGCAATTTTCTTGAAATAATGCCTCTAAGGAATCGGCATCGGTTATTACACGTGAAACTCCGGCTGCCGCCGCCGTGGATTCTGATGAAGTCGTCGCCGGTACGATATTAGAGAATTGTTTATTTAAGAAGAAATACATTAGGTGAATTTATCTGTTCTTGGATCATCCTTTTATGTAAAATAAAGAAAATTTTCAGCCTGAATCGAATTTAAAACTTATCCAAGTTAATATTCTTTCAGTATCATTTTCTTCTTTC

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAATATACGGCGAAGTTCTCCGGCTGGTGAAGCGGCTGCCGAAGGACTCCAGGCCTTACTACGCCAAGTACGCCCGAGAGAATTTCGTCAATTACAGAGAAATCGATGCCAACGACGCCAAATCCCTACAAGAACTCTTCCACAGAGCTTACGATCACTCCCTTTGGATTCTCAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAACTGAGGGAGATCTGTCATAGTTAG

Protein sequence

MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSLWILNKYSVDGSAADKLREICHS
Homology
BLAST of Sed0014592 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 75/82 (91.46%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIYGEVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY HSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Sed0014592 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.7e-36
Identity = 73/82 (89.02%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV+RLPKD+RPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Sed0014592 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 72/82 (87.80%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIY EVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSV+GSAADKL+EIC+S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

BLAST of Sed0014592 vs. NCBI nr
Match: XP_022149201.1 (LYR motif-containing protein At3g19508 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-34
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIYG VLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSLQELFHRAY+HS+
Sbjct: 1  MEKALRIYGGVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLQELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+LNKYSVD SAADKLREIC
Sbjct: 61 WVLNKYSVDPSAADKLREIC 80

BLAST of Sed0014592 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 7.0e-34
Identity = 69/81 (85.19%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV++LPKD+RPYYAKY RENFVNYRE+DA DAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICH 82
          W+LNKYSVDGSAADKL+EIC+
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of Sed0014592 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-27
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          M+K LR+YG V+RLV+ LP DSRPYYAKYARENFVNYRE+D ++  SL ELF RAY+HSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+L KYS+D SAA KL+EIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

BLAST of Sed0014592 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 8  YGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSLWILNK 66
          Y EVL+LVKRLP  SR YYA+YARENFV Y E++  D +S++ L  R + H+ W+L K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

BLAST of Sed0014592 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 73/82 (89.02%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV+RLPKD+RPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Sed0014592 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 73/82 (89.02%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALR+YGEVLRLV+RLPKD+RPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSVDGSAADKL+EIC+S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Sed0014592 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.2e-35
Identity = 72/82 (87.80%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIY EVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELFHRAY+HS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSV+GSAADKL+EIC+S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

BLAST of Sed0014592 vs. ExPASy TrEMBL
Match: A0A6J1D7N7 (LYR motif-containing protein At3g19508 OS=Momordica charantia OX=3673 GN=LOC111017679 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIYG VLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSLQELFHRAY+HS+
Sbjct: 1  MEKALRIYGGVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLQELFHRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+LNKYSVD SAADKLREIC
Sbjct: 61 WVLNKYSVDPSAADKLREIC 80

BLAST of Sed0014592 vs. ExPASy TrEMBL
Match: A0A6J1J656 (LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC111482114 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 71/82 (86.59%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          MEKALRIY EVLRLV+RLPKDSRPYYAKYARENFVNYRE+DANDAKSL+ELF+RAY+HS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60

Query: 61 WILNKYSVDGSAADKLREICHS 83
          W+LNKYSV+GSAADKL+EIC+S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

BLAST of Sed0014592 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-28
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MEKALRIYGEVLRLVKRLPKDSRPYYAKYARENFVNYREIDANDAKSLQELFHRAYDHSL 60
          M+K LR+YG V+RLV+ LP DSRPYYAKYARENFVNYRE+D ++  SL ELF RAY+HSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WILNKYSVDGSAADKLREIC 81
          W+L KYS+D SAA KL+EIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038898400.13.3e-3691.46LYR motif-containing protein At3g19508 [Benincasa hispida][more]
XP_008456173.15.7e-3689.02PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L... [more]
XP_022941949.11.1e-3487.80LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ... [more]
XP_022149201.12.4e-3491.25LYR motif-containing protein At3g19508 [Momordica charantia][more]
XP_004140718.17.0e-3485.19LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Q1G3M22.9e-2771.25LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
A9SNJ15.0e-1155.17LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G... [more]
Match NameE-valueIdentityDescription
A0A5A7T6G82.8e-3689.02LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3C3W42.8e-3689.02LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P... [more]
A0A6J1FPX95.2e-3587.80LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A6J1D7N71.2e-3491.25LYR motif-containing protein At3g19508 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1J6563.4e-3486.59LYR motif-containing protein At3g19508 OS=Cucurbita maxima OX=3661 GN=LOC1114821... [more]
Match NameE-valueIdentityDescription
AT3G19508.12.1e-2871.25unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..57
e-value: 4.0E-5
score: 23.6
NoneNo IPR availablePANTHERPTHR36758OS01G0342800 PROTEINcoord: 1..81
NoneNo IPR availableCDDcd20269Complex1_LYR_LYRM9coord: 4..65
e-value: 6.64531E-21
score: 75.7415

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014592.1Sed0014592.1mRNA