Sed0007116.1 (mRNA) Chayote v1

Overview


Name	Sed0007116.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	F-box domain-containing protein
Location	LG06: 45082744 .. 45084431 (-)
Sequence length	1688
RNA-Seq Expression	Sed0007116.1
Synteny	Sed0007116.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAACTCGAGGGAGAATTGGGAATCAAGATCAAATTTGTGCGAAACCCTAGGCCATTGTTCTTCGTTCAATTCCATTCAATTGCTGCCATTTTTTCCACTAAACTTCGATCGACGATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGAAGGATTTTGATTTCTTCATCTGTTGTGTTTCTATATCTTGTTCTGTTCTTGGAAATTTTATATAGCTAGTATTGATACATATTATTAGGTGGTAGTTTGTTGCATAGAATACTCTTGATATCAATATCAATATCAATAGGAATCTGTGTTTTGCATAACTAGACGTTATGTAGTTATGTAGTTATCTTTTAGTACAACAATATTTAGGGGTCGGAGGAGCTGACTTCATGCCAAAACTGTTCTTCATGTCTTAACAATTGAGTTATATTTGAATACTAAGTTAACAACAAATAGTTATCTATCGAGTATATTAGCGAATGGATCAGATTTTTTGGTCTCTGTTCTGCTTTTTCGTTAGGGCAGGTTTCTTGATGTTTTCGAGCTCCGAAATTGATTCCGAGCTAGTCTCGAAAGTCTCTTTTTATACGATGATAGTTGGAGCACAACGGAATTTGTGAATGAGTTGGGAGCATGTTCTAG

mRNA sequence

ATGCTAAACTCGAGGGAGAATTGGGAATCAAGATCAAATTTGTGCGAAACCCTAGGCCATTGTTCTTCGTTCAATTCCATTCAATTGCTGCCATTTTTTCCACTAAACTTCGATCGACGATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGAAGGATTTTGATTTCTTCATCTGTTGTGTTTCTATATCTTGTTCTGTTCTTGGAAATTTTATATAGCTAGTATTGATACATATTATTAGGTGGTAGTTTGTTGCATAGAATACTCTTGATATCAATATCAATATCAATAGGAATCTGTGTTTTGCATAACTAGACGTTATGTAGTTATGTAGTTATCTTTTAGTACAACAATATTTAGGGGTCGGAGGAGCTGACTTCATGCCAAAACTGTTCTTCATGTCTTAACAATTGAGTTATATTTGAATACTAAGTTAACAACAAATAGTTATCTATCGAGTATATTAGCGAATGGATCAGATTTTTTGGTCTCTGTTCTGCTTTTTCGTTAGGGCAGGTTTCTTGATGTTTTCGAGCTCCGAAATTGATTCCGAGCTAGTCTCGAAAGTCTCTTTTTATACGATGATAGTTGGAGCACAACGGAATTTGTGAATGAGTTGGGAGCATGTTCTAG

Coding sequence (CDS)

ATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGA

Protein sequence

MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKETFRKGGITRGDVWILNPVTNEYLKPRISKADRNRKYRYGLGLNPKTNQYKIARSSRVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRHVIYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVFSFGSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELEKMKTFHPVGSISFNSLDKILAGNC

Homology

[Close]

BLAST of Sed0007116.1 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 3.6e-66
Identity = 156/386 (40.41%), Postives = 225/386 (58.29%), Query Frame = 0


Query: 1   MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
           M+ K   +I+  NSEL   ++++IFSKLP  NL +CRLV   W +L+ +CKF+  IS SN
Sbjct: 1   MEKKPKSKIKTTNSELPPDILQLIFSKLPFFNLPTCRLVSATWNNLVLSCKFDPSISISN 60

Query: 61  FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
             F H    R  NL  VD DP  LE MSTVA+F F P +S+G+ +ISI+NSC+G++ +L+
Sbjct: 61  LFFAHFYSCRDRNLHCVDLDPQHLEGMSTVASFTFHPNVSSGSCKISIINSCSGLISLLI 120

Query: 121 KETFRKGGITRGDVWILNPVTNEYLK-PRI-SKADRNRKYRYGLGLNPKTNQYKIARSSR 180
            +  R+ G   G V +LNP+TNEY K P   SK D  + Y YGLG +P+T QYK+AR+  
Sbjct: 121 TKR-RRRGHRPGVVCVLNPMTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHY 180

Query: 181 VLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VIYRM 240
           V ++    +  + T+CEW  +  +P F    + VYF+GG+Y VG Q+  +     VIYR+
Sbjct: 181 VCHEFIVEIFAFGTSCEWTPVGSVPYFLNEYHGVYFNGGLYWVGGQQLPNAGLSDVIYRL 240

Query: 241 DVENERIKKISFP---RDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVT 300
           D+E+++ K+ISFP    D G+F +IG  N  L++T        HV +M +D+SW  + V 
Sbjct: 241 DLEDDKFKQISFPLDGDDEGDFPYIGVYNDTLYLTLCCGDFEYHVWKMEEDFSWIKEFVL 300

Query: 301 VFSFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
                   SL          + +KA EDG  L L   L L+L+D K+     +  DQD E
Sbjct: 301 ALPENVHHSLPRHHPIGYCLQLIKACEDGNILCLCAGLYLILYDPKTETTE-LLTDQDFE 360

Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
           ++K    + + S +FNSL  ILAG C
Sbjct: 361 IKKHMWVYQIDSFNFNSLHNILAGKC 384

[Close]

BLAST of Sed0007116.1 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-63
Identity = 151/386 (39.12%), Postives = 218/386 (56.48%), Query Frame = 0


Query: 1   MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
           M+ K    I N  SEL   V+++IFSKLP  NL +CRLV   W +LIS+CKF+  IS S+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
             F      R  NL  V+FDP   E MSTVA+F F P+LS+G+ RI+I+NSC+G++ +++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 KETFRKGGITRGD-VWILNPVTNEYLK--PRISKADRNRKYRYGLGLNPKTNQYKIARSS 180
            +  R+G   R D V +LNP+TNEY K     SK DR   Y YGLG +P TNQYK+AR+ 
Sbjct: 121 NKRRRRG--HRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTH 180

Query: 181 RVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQ--------ENRHV 240
              ++    +  + T+CEW  +  +P F    + VY +GG+Y VG Q        +   V
Sbjct: 181 FTHDEFIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEV 240

Query: 241 IYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTV 300
           IYR+D+++E+ +KISFP D G+  +I   NG L++T   +    H  +M +D+SW    V
Sbjct: 241 IYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFV 300

Query: 301 FSFGSLESLDFR---------FMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
            +         R          +K  EDG  L L+  + L+L+D  +  +  I  +QD E
Sbjct: 301 LALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVE-ILTNQDFE 360

Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
           +++    H + S SFNSL  ILAG C
Sbjct: 361 IKEAMWVHQIESFSFNSLHNILAGKC 383

[Close]

BLAST of Sed0007116.1 vs. NCBI nr
Match: XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0


Query: 4   KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
           K    I N + EL   +++ IFSK+P  NL +CRLV + W +LIS+CKF+   S  +  F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
                 R  NL  V+FDP  +E MS VA+F F P+  + + RI+I+NSC+G++ +L+ + 
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
            R+ G  R  V +LNP+TNEY K P +  K D+   Y YGLG +PKTNQYK+AR+    N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182

Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
           +    +  + T+CEW  I  +P F    + VYF+GG+Y VG Q+            V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242

Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
           +D+ +E+ KKIS P   G+  ++G  NG L++T   +    HV +M++D+SW  + V   
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302

Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
               L SL          + +K  EDG  L L   + L+++D K+  +  I  DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362

[Close]

BLAST of Sed0007116.1 vs. NCBI nr
Match: XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 4.3e-59
Identity = 154/388 (39.69%), Postives = 219/388 (56.44%), Query Frame = 0


Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +LI TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +F +   S  L  VDFDP+  E M+++ +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPKT QYKIAR+S 
Sbjct: 121 --RKLGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T+  W  + FLP      + VYF GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE+++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW    V 
Sbjct: 241 YRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSWIKAFVI 300

Query: 301 SF-------------GSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
           S                +  LD   +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 SRPRNLCHPDHPHQPWGVSQLD--PIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + + +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGN 381

[Close]

BLAST of Sed0007116.1 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-58
Identity = 152/388 (39.18%), Postives = 216/388 (55.67%), Query Frame = 0


Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +L+ TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +  +   S  L  VDFDP+  E M++V +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  ISLAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPK  QYKIAR+S 
Sbjct: 121 --RKPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T   W  + FLP      + VYF+GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE ++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW  +  F
Sbjct: 241 YRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSW--IKAF 300

Query: 301 SFGSLESL-------------DFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
              S  +L                 +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + S +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGN 381

[Close]

BLAST of Sed0007116.1 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 151/386 (39.12%), Postives = 218/386 (56.48%), Query Frame = 0


Query: 1   MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
           M+ K    I N  SEL   V+++IFSKLP  NL +CRLV   W +LIS+CKF+  IS S+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
             F      R  NL  V+FDP   E MSTVA+F F P+LS+G+ RI+I+NSC+G++ +++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 KETFRKGGITRGD-VWILNPVTNEYLK--PRISKADRNRKYRYGLGLNPKTNQYKIARSS 180
            +  R+G   R D V +LNP+TNEY K     SK DR   Y YGLG +P TNQYK+AR+ 
Sbjct: 121 NKRRRRG--HRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTH 180

Query: 181 RVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQ--------ENRHV 240
              ++    +  + T+CEW  +  +P F    + VY +GG+Y VG Q        +   V
Sbjct: 181 FTHDEFIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEV 240

Query: 241 IYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTV 300
           IYR+D+++E+ +KISFP D G+  +I   NG L++T   +    H  +M +D+SW    V
Sbjct: 241 IYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFV 300

Query: 301 FSFGSLESLDFR---------FMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
            +         R          +K  EDG  L L+  + L+L+D  +  +  I  +QD E
Sbjct: 301 LALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVE-ILTNQDFE 360

Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
           +++    H + S SFNSL  ILAG C
Sbjct: 361 IKEAMWVHQIESFSFNSLHNILAGKC 383

[Close]

BLAST of Sed0007116.1 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0


Query: 4   KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
           K    I N + EL   +++ IFSK+P  NL +CRLV + W +LIS+CKF+   S  +  F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
                 R  NL  V+FDP  +E MS VA+F F P+  + + RI+I+NSC+G++ +L+ + 
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
            R+ G  R  V +LNP+TNEY K P +  K D+   Y YGLG +PKTNQYK+AR+    N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182

Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
           +    +  + T+CEW  I  +P F    + VYF+GG+Y VG Q+            V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242

Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
           +D+ +E+ KKIS P   G+  ++G  NG L++T   +    HV +M++D+SW  + V   
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302

Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
               L SL          + +K  EDG  L L   + L+++D K+  +  I  DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362

[Close]

BLAST of Sed0007116.1 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0


Query: 4   KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
           K    I N + EL   +++ IFSK+P  NL +CRLV + W +LIS+CKF+   S  +  F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
                 R  NL  V+FDP  +E MS VA+F F P+  + + RI+I+NSC+G++ +L+ + 
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
            R+ G  R  V +LNP+TNEY K P +  K D+   Y YGLG +PKTNQYK+AR+    N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182

Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
           +    +  + T+CEW  I  +P F    + VYF+GG+Y VG Q+            V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242

Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
           +D+ +E+ KKIS P   G+  ++G  NG L++T   +    HV +M++D+SW  + V   
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302

Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
               L SL          + +K  EDG  L L   + L+++D K+  +  I  DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362

[Close]

BLAST of Sed0007116.1 vs. ExPASy TrEMBL
Match: A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-59
Identity = 154/388 (39.69%), Postives = 219/388 (56.44%), Query Frame = 0


Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +LI TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +F +   S  L  VDFDP+  E M+++ +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPKT QYKIAR+S 
Sbjct: 121 --RKLGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T+  W  + FLP      + VYF GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE+++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW    V 
Sbjct: 241 YRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSWIKAFVI 300

Query: 301 SF-------------GSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
           S                +  LD   +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 SRPRNLCHPDHPHQPWGVSQLD--PIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + + +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGN 381

[Close]

BLAST of Sed0007116.1 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 152/388 (39.18%), Postives = 216/388 (55.67%), Query Frame = 0


Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +L+ TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +  +   S  L  VDFDP+  E M++V +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  ISLAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPK  QYKIAR+S 
Sbjct: 121 --RKPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T   W  + FLP      + VYF+GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE ++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW  +  F
Sbjct: 241 YRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSW--IKAF 300

Query: 301 SFGSLESL-------------DFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
              S  +L                 +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + S +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGN 381

[Close]

BLAST of Sed0007116.1 vs. TAIR 10
Match: AT5G41510.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.4e-04
Identity = 36/115 (31.30%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 14  SELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLFVHRSSNLLVV 73
           S L   ++E IFS++P+ ++ + RL CK W +L    K ES           R    ++V
Sbjct: 6   SNLPRDLIEEIFSRVPLTSMKAVRLTCKSWNNL---SKSESFTKVHIGRAATREEKTMIV 65

Query: 74  DFDPIRLESMSTV-------ATFKFDPELSTGNRRISIVNSCNGILCVLVKETFR 122
           D  P +L  MS V       A FK    L   N RI+ V    G+L  ++K+  R
Sbjct: 66  DVMPHKLNLMSIVIDDVTPSAEFKGQFSLLHKNYRINQVLHYEGLLLCIMKDPTR 117

The following BLAST results are available for this feature:

BLAST of Sed0007116.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880514.1	3.6e-66	40.41	putative F-box protein At1g46984 [Benincasa hispida]	[more]
XP_004135796.1	2.2e-63	39.12	putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot...	[more]
XP_008450717.1	1.1e-59	37.76	PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ...	[more]
XP_004134745.1	4.3e-59	39.69	F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787...	[more]
TYK13067.1	1.2e-58	39.18	putative F-box protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0007116.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007116.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1M5	1.1e-63	39.12	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ...	[more]
A0A5D3CIX9	5.4e-60	37.76	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BQV8	5.4e-60	37.76	putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV...	[more]
A0A0A0KJY9	2.1e-59	39.69	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ...	[more]
A0A5D3CM94	6.0e-59	39.18	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]

BLAST of Sed0007116.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41510.1	1.4e-04	31.30	F-box and associated interaction domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 20..52 e-value: 1.5E-6 score: 27.9
None	No IPR available	GENE3D	1.20.1280.50		coord: 11..53 e-value: 1.4E-7 score: 33.1
None	No IPR available	PANTHER	PTHR47993:SF20	F-BOX FAMILY PROTEIN	coord: 20..290
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 20..290
IPR011043	Galactose oxidase/kelch, beta-propeller	SUPERFAMILY	50965	Galactose oxidase, central domain	coord: 105..291
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 19..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0007116	Sed0007116	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007116.1-three_prime_utr	Sed0007116.1-three_prime_utr-LG06:45082744..45083223	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007116.1-exon	Sed0007116.1-exon-LG06:45082744..45084431	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007116.1-cds	Sed0007116.1-cds-LG06:45083224..45084312	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007116.1-five_prime_utr	Sed0007116.1-five_prime_utr-LG06:45084313..45084431	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0007116.1	Sed0007116.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding